greplm-core 0.1.2

//! On-disk index segments.
//!
//! Each segment is a set of files:
//!   * `seg-N.fst`  - an FST mapping each trigram (3 bytes) to a byte offset
//!   * `seg-N.post` - concatenated roaring bitmaps (posting lists) at those offsets
//!   * `seg-N.docs` - JSON array of [`DocMeta`] (one per document)
//!   * `seg-N.syms` - JSON array of [`SymbolEntry`]
//!   * `seg-N.refs` - JSON array of [`RefEntry`] (call sites + imports)
//!   * `seg-N.live` - a roaring bitmap of live (non-tombstoned) doc IDs
//!
//! The FST and postings blob are mmap'd for zero-copy, page-cache-backed reads.
//! Doc and symbol tables are small relative to content and loaded into memory.

use std::collections::{BTreeMap, BTreeSet, HashMap};
use std::io::BufWriter;

use memmap2::Mmap;
use roaring::RoaringBitmap;
use serde::{Deserialize, Serialize};

use crate::error::{Error, Result};
use crate::fsutil::{write_atomic, AtomicFile};
use crate::paths::Paths;
use crate::trigram::{Trigram, TrigramQuery};

/// Metadata for one indexed document.
#[derive(Debug, Clone, Serialize, Deserialize)]
pub struct DocMeta {
    /// Path relative to the project root.
    pub path: String,
    /// Language id (see [`crate::lang::Language::id`]).
    pub lang: String,
    pub size: u64,
    /// Fast content hash at index time (xxh3).
    pub hash: u64,
    pub lines: u32,
}

/// A symbol definition extracted from a document.
#[derive(Debug, Clone, Serialize, Deserialize)]
pub struct SymbolEntry {
    pub doc_id: u32,
    pub name: String,
    /// Kind, e.g. "function", "class", "struct".
    pub kind: String,
    pub line_start: u32,
    pub line_end: u32,
    /// Enclosing named container (e.g. the class a method belongs to).
    #[serde(default, skip_serializing_if = "Option::is_none")]
    pub container: Option<String>,
    /// Compact one-line signature.
    #[serde(default, skip_serializing_if = "Option::is_none")]
    pub signature: Option<String>,
}

/// A symbol before a document id is assigned.
#[derive(Debug, Clone)]
pub struct RawSymbol {
    pub name: String,
    pub kind: String,
    pub line_start: u32,
    pub line_end: u32,
    pub container: Option<String>,
    pub signature: Option<String>,
}

/// The kind of a structural reference. Stored as a 1-byte enum (rather than a
/// heap `String`) since refs are the most numerous index records; serializes to
/// the same `"call"`/`"import"` tokens on disk.
#[derive(Debug, Clone, Copy, PartialEq, Eq, Serialize, Deserialize)]
#[serde(rename_all = "lowercase")]
pub enum RefKind {
    Call,
    Import,
}

impl RefKind {
    pub fn as_str(self) -> &'static str {
        match self {
            RefKind::Call => "call",
            RefKind::Import => "import",
        }
    }
}

/// A structural reference (call site or import) extracted from a document.
#[derive(Debug, Clone, Serialize, Deserialize)]
pub struct RefEntry {
    pub doc_id: u32,
    pub name: String,
    pub kind: RefKind,
    pub line: u32,
    pub column: u32,
}

/// A reference before a document id is assigned.
#[derive(Debug, Clone)]
pub struct RawRef {
    pub name: String,
    pub kind: RefKind,
    pub line: u32,
    pub column: u32,
}

/// Accumulates documents and builds a segment on disk.
#[derive(Default)]
pub struct SegmentWriter {
    docs: Vec<DocMeta>,
    syms: Vec<SymbolEntry>,
    refs: Vec<RefEntry>,
    postings: BTreeMap<Trigram, RoaringBitmap>,
}

impl SegmentWriter {
    pub fn new() -> Self {
        Self::default()
    }

    pub fn is_empty(&self) -> bool {
        self.docs.is_empty()
    }

    pub fn doc_count(&self) -> usize {
        self.docs.len()
    }

    pub fn symbol_count(&self) -> usize {
        self.syms.len()
    }

    /// Add a document and return its assigned doc id.
    pub fn add_doc(
        &mut self,
        meta: DocMeta,
        trigrams: &BTreeSet<Trigram>,
        symbols: Vec<RawSymbol>,
        refs: Vec<RawRef>,
    ) -> u32 {
        let doc_id = self.docs.len() as u32;
        self.docs.push(meta);
        for t in trigrams {
            self.postings.entry(*t).or_default().insert(doc_id);
        }
        for s in symbols {
            self.syms.push(SymbolEntry {
                doc_id,
                name: s.name,
                kind: s.kind,
                line_start: s.line_start,
                line_end: s.line_end,
                container: s.container,
                signature: s.signature,
            });
        }
        for r in refs {
            self.refs.push(RefEntry {
                doc_id,
                name: r.name,
                kind: r.kind,
                line: r.line,
                column: r.column,
            });
        }
        doc_id
    }

    /// Serialize this segment to disk under the given segment id.
    pub fn write(self, paths: &Paths, seg_id: u64) -> Result<()> {
        std::fs::create_dir_all(paths.segments_dir())
            .map_err(|e| Error::io(paths.segments_dir(), e))?;
        let (post_blob, fst_entries) = build_postings_blob(self.postings)?;
        write_segment_files(
            paths,
            seg_id,
            &self.docs,
            &self.syms,
            &self.refs,
            &fst_entries,
            &post_blob,
        )
    }
}

/// Serialize the components of a segment to disk atomically. Shared by the
/// incremental writer and by compaction's merge path.
fn write_segment_files(
    paths: &Paths,
    seg_id: u64,
    docs: &[DocMeta],
    syms: &[SymbolEntry],
    refs: &[RefEntry],
    fst_entries: &[(Trigram, u64)],
    post_blob: &[u8],
) -> Result<()> {
    // FST keys must be inserted in lexicographic order; callers pass entries
    // sorted by trigram (BTreeMap iteration over [u8; 3] yields that order).
    let fst_path = paths.fst_file(seg_id);
    let mut fst_out = AtomicFile::create(&fst_path)?;
    let mut builder = fst::MapBuilder::new(BufWriter::new(fst_out.file()))?;
    for (tri, offset) in fst_entries {
        builder.insert(tri, *offset)?;
    }
    builder.finish()?;
    fst_out.commit()?;

    write_atomic(&paths.post_file(seg_id), post_blob)?;
    write_atomic(&paths.docs_file(seg_id), &serde_json::to_vec(docs)?)?;
    write_atomic(&paths.syms_file(seg_id), &serde_json::to_vec(syms)?)?;
    write_atomic(&paths.refs_file(seg_id), &serde_json::to_vec(refs)?)?;

    // Initially every doc is live.
    let mut live = RoaringBitmap::new();
    live.insert_range(0..docs.len() as u32);
    write_bitmap(&paths.live_file(seg_id), &live)?;

    Ok(())
}

/// A serialized postings blob paired with the (trigram, offset) entries that
/// index into it for the FST.
type PostingsBlob = (Vec<u8>, Vec<(Trigram, u64)>);

/// Build the postings blob and the (trigram, offset) FST entries from an
/// in-memory posting map.
fn build_postings_blob(postings: BTreeMap<Trigram, RoaringBitmap>) -> Result<PostingsBlob> {
    let mut post_blob: Vec<u8> = Vec::new();
    let mut fst_entries: Vec<(Trigram, u64)> = Vec::with_capacity(postings.len());
    for (tri, mut bm) in postings.into_iter() {
        bm.optimize();
        let offset = post_blob.len() as u64;
        bm.serialize_into(&mut post_blob)
            .map_err(|e| Error::other(format!("roaring serialize: {e}")))?;
        fst_entries.push((tri, offset));
    }
    Ok((post_blob, fst_entries))
}

/// Write a segment directly from prebuilt parts (used by compaction).
pub(crate) fn write_segment_from_parts(
    paths: &Paths,
    seg_id: u64,
    docs: &[DocMeta],
    syms: &[SymbolEntry],
    refs: &[RefEntry],
    postings: BTreeMap<Trigram, RoaringBitmap>,
) -> Result<()> {
    std::fs::create_dir_all(paths.segments_dir())
        .map_err(|e| Error::io(paths.segments_dir(), e))?;
    let (post_blob, fst_entries) = build_postings_blob(postings)?;
    write_segment_files(paths, seg_id, docs, syms, refs, &fst_entries, &post_blob)
}

/// A read-only, mmap-backed view of a segment.
pub struct Segment {
    pub id: u64,
    fst: fst::Map<Mmap>,
    post: Mmap,
    pub docs: Vec<DocMeta>,
    pub syms: Vec<SymbolEntry>,
    pub refs: Vec<RefEntry>,
    live: RoaringBitmap,
    /// Symbol indices grouped by `doc_id` (a flattened CSR layout). Together with
    /// `sym_start` this gives O(1) access to a document's symbols instead of a
    /// full scan of `syms`.
    sym_order: Vec<u32>,
    /// Prefix offsets into `sym_order`; `sym_start[d]..sym_start[d + 1]` is the
    /// slice of symbol indices belonging to doc `d`. Length is `docs.len() + 1`.
    sym_start: Vec<u32>,
    /// Reference indices grouped by `doc_id` (CSR layout, mirrors `sym_order`).
    ref_order: Vec<u32>,
    /// Prefix offsets into `ref_order`; length is `docs.len() + 1`.
    ref_start: Vec<u32>,
    /// Lowercased symbol names, parallel to `syms`, precomputed once at open.
    sym_name_lower: Vec<String>,
    /// Call refs grouped by callee name -> indices into `refs`. Lets callers /
    /// references / blast-radius look up by name in O(results) instead of
    /// scanning every ref each query.
    call_by_name: HashMap<Box<str>, Vec<u32>>,
}

impl Segment {
    pub fn open(paths: &Paths, seg_id: u64) -> Result<Segment> {
        let fst_path = paths.fst_file(seg_id);
        let fst_file = std::fs::File::open(&fst_path).map_err(|e| Error::io(&fst_path, e))?;
        let fst_mmap = unsafe { Mmap::map(&fst_file).map_err(|e| Error::io(&fst_path, e))? };
        let fst = fst::Map::new(fst_mmap)?;

        let post_path = paths.post_file(seg_id);
        let post_file = std::fs::File::open(&post_path).map_err(|e| Error::io(&post_path, e))?;
        let post = unsafe { Mmap::map(&post_file).map_err(|e| Error::io(&post_path, e))? };

        let docs_path = paths.docs_file(seg_id);
        let docs: Vec<DocMeta> = serde_json::from_slice(
            &std::fs::read(&docs_path).map_err(|e| Error::io(&docs_path, e))?,
        )?;

        let syms_path = paths.syms_file(seg_id);
        let syms: Vec<SymbolEntry> = serde_json::from_slice(
            &std::fs::read(&syms_path).map_err(|e| Error::io(&syms_path, e))?,
        )?;

        // Refs were added in schema v2. Tolerate a missing file (treat as no
        // refs) so an older segment can still be opened read-only.
        let refs_path = paths.refs_file(seg_id);
        let refs: Vec<RefEntry> = match std::fs::read(&refs_path) {
            Ok(bytes) => serde_json::from_slice(&bytes)?,
            Err(e) if e.kind() == std::io::ErrorKind::NotFound => Vec::new(),
            Err(e) => return Err(Error::io(&refs_path, e)),
        };

        let live = read_bitmap(&paths.live_file(seg_id))?;

        let (sym_order, sym_start) = build_doc_index(docs.len(), syms.iter().map(|s| s.doc_id));
        let (ref_order, ref_start) = build_doc_index(docs.len(), refs.iter().map(|r| r.doc_id));
        let sym_name_lower = syms.iter().map(|s| s.name.to_ascii_lowercase()).collect();

        let mut call_by_name: HashMap<Box<str>, Vec<u32>> = HashMap::new();
        for (i, r) in refs.iter().enumerate() {
            if r.kind == RefKind::Call {
                call_by_name
                    .entry(r.name.as_str().into())
                    .or_default()
                    .push(i as u32);
            }
        }

        Ok(Segment {
            id: seg_id,
            fst,
            post,
            docs,
            syms,
            refs,
            live,
            sym_order,
            sym_start,
            ref_order,
            ref_start,
            sym_name_lower,
            call_by_name,
        })
    }

    pub fn doc(&self, doc_id: u32) -> Option<&DocMeta> {
        self.docs.get(doc_id as usize)
    }

    /// The symbols defined in `doc_id`, in storage order. O(1) lookup.
    pub fn doc_syms(&self, doc_id: u32) -> impl Iterator<Item = &SymbolEntry> {
        let d = doc_id as usize;
        let (lo, hi) = if d + 1 < self.sym_start.len() {
            (self.sym_start[d] as usize, self.sym_start[d + 1] as usize)
        } else {
            (0, 0)
        };
        self.sym_order[lo..hi]
            .iter()
            .map(move |&i| &self.syms[i as usize])
    }

    /// The references (calls + imports) originating in `doc_id`. O(1) lookup.
    pub fn doc_refs(&self, doc_id: u32) -> impl Iterator<Item = &RefEntry> {
        let d = doc_id as usize;
        let (lo, hi) = if d + 1 < self.ref_start.len() {
            (self.ref_start[d] as usize, self.ref_start[d + 1] as usize)
        } else {
            (0, 0)
        };
        self.ref_order[lo..hi]
            .iter()
            .map(move |&i| &self.refs[i as usize])
    }

    /// Call sites whose callee is exactly `name`, via the prebuilt name index
    /// (O(results), no full scan). Liveness is not filtered here; callers that
    /// care should check [`Segment::is_live`].
    pub fn calls_to(&self, name: &str) -> impl Iterator<Item = &RefEntry> {
        self.call_by_name
            .get(name)
            .into_iter()
            .flatten()
            .map(move |&i| &self.refs[i as usize])
    }

    /// Lowercased name of the symbol at index `i` in `syms`.
    pub fn sym_name_lower(&self, i: usize) -> &str {
        &self.sym_name_lower[i]
    }

    pub fn is_live(&self, doc_id: u32) -> bool {
        self.live.contains(doc_id)
    }

    pub fn live_count(&self) -> u64 {
        self.live.len()
    }

    /// Read the posting list for a single trigram.
    fn posting(&self, tri: Trigram) -> Result<Option<RoaringBitmap>> {
        match self.fst.get(tri) {
            Some(offset) => Ok(Some(self.posting_at(offset)?)),
            None => Ok(None),
        }
    }

    /// Deserialize the posting list stored at `offset` in the postings blob.
    fn posting_at(&self, offset: u64) -> Result<RoaringBitmap> {
        let slice = &self.post[offset as usize..];
        RoaringBitmap::deserialize_from(slice)
            .map_err(|e| Error::Corrupt(format!("posting list: {e}")))
    }

    /// Add this segment's postings to `out`, remapping doc ids via `remap` and
    /// dropping any doc not present in the map (i.e. tombstoned/non-live).
    pub(crate) fn remap_postings(
        &self,
        remap: &std::collections::HashMap<u32, u32>,
        out: &mut BTreeMap<Trigram, RoaringBitmap>,
    ) -> Result<()> {
        use fst::Streamer;
        let mut stream = self.fst.stream();
        while let Some((key, offset)) = stream.next() {
            if key.len() != 3 {
                continue;
            }
            let tri: Trigram = [key[0], key[1], key[2]];
            let bm = self.posting_at(offset)?;
            let dest = out.entry(tri).or_default();
            for old in bm.iter() {
                if let Some(&new_id) = remap.get(&old) {
                    dest.insert(new_id);
                }
            }
        }
        Ok(())
    }

    /// All live doc ids in this segment.
    pub fn all_live(&self) -> RoaringBitmap {
        self.live.clone()
    }

    /// AND together a group of trigrams (rarest-first so the smallest posting
    /// list drives the intersection and we short-circuit on an empty result).
    fn intersect_group(&self, group: &[Trigram]) -> Result<RoaringBitmap> {
        let mut lists: Vec<RoaringBitmap> = Vec::with_capacity(group.len());
        for tri in group {
            lists.push(self.posting(*tri)?.unwrap_or_default());
        }
        lists.sort_by_key(|b| b.len());
        let mut acc: Option<RoaringBitmap> = None;
        for p in lists {
            acc = Some(match acc.take() {
                None => p,
                Some(a) => a & p,
            });
            if acc.as_ref().map(|b| b.is_empty()).unwrap_or(false) {
                break;
            }
        }
        Ok(acc.unwrap_or_default())
    }

    /// OR together a clause of trigrams (the union of their posting lists).
    fn union_clause(&self, clause: &[Trigram]) -> Result<RoaringBitmap> {
        let mut acc = RoaringBitmap::new();
        for tri in clause {
            if let Some(bm) = self.posting(*tri)? {
                acc |= bm;
            }
        }
        Ok(acc)
    }

    /// Compute candidate doc ids satisfying the trigram query, intersected with
    /// the live set. An unconstrained query yields all live docs.
    pub fn candidates(&self, query: &TrigramQuery) -> Result<RoaringBitmap> {
        if query.is_unconstrained() {
            return Ok(self.all_live());
        }

        // DNF part: OR of (AND of group). When absent (or any group is empty),
        // it can't filter, so we start from the full live set.
        let dnf_active =
            !query.or_groups.is_empty() && query.or_groups.iter().all(|g| !g.is_empty());
        let mut result = if dnf_active {
            let mut acc: Option<RoaringBitmap> = None;
            for group in &query.or_groups {
                let g = self.intersect_group(group)?;
                acc = Some(match acc.take() {
                    None => g,
                    Some(a) => a | g,
                });
            }
            acc.unwrap_or_default()
        } else {
            self.all_live()
        };

        // CNF part: AND of (OR within clause).
        let cnf_active =
            !query.and_clauses.is_empty() && query.and_clauses.iter().all(|c| !c.is_empty());
        if cnf_active {
            for clause in &query.and_clauses {
                result &= self.union_clause(clause)?;
                if result.is_empty() {
                    break;
                }
            }
        }

        result &= &self.live;
        Ok(result)
    }
}

/// Build a CSR-style index grouping row indices by their `doc_id`. Shared by
/// the symbol and reference per-document lookups.
fn build_doc_index(n: usize, doc_ids: impl Iterator<Item = u32> + Clone) -> (Vec<u32>, Vec<u32>) {
    let mut counts = vec![0u32; n + 1];
    let mut total = 0usize;
    for d in doc_ids.clone() {
        let d = d as usize;
        if d < n {
            counts[d] += 1;
            total += 1;
        }
    }
    // Prefix-sum into start offsets.
    let mut start = vec![0u32; n + 1];
    let mut acc = 0u32;
    for d in 0..n {
        start[d] = acc;
        acc += counts[d];
    }
    start[n] = acc;
    // Scatter row indices into their doc's slot.
    let mut order = vec![0u32; total];
    let mut cursor: Vec<u32> = start[..n].to_vec();
    for (i, d) in doc_ids.enumerate() {
        let d = d as usize;
        if d < n {
            order[cursor[d] as usize] = i as u32;
            cursor[d] += 1;
        }
    }
    (order, start)
}

pub(crate) fn write_bitmap(path: &std::path::Path, bm: &RoaringBitmap) -> Result<()> {
    let mut buf = Vec::with_capacity(bm.serialized_size());
    bm.serialize_into(&mut buf)
        .map_err(|e| Error::other(format!("roaring serialize: {e}")))?;
    write_atomic(path, &buf)
}

pub(crate) fn read_bitmap(path: &std::path::Path) -> Result<RoaringBitmap> {
    let bytes = std::fs::read(path).map_err(|e| Error::io(path, e))?;
    RoaringBitmap::deserialize_from(&bytes[..])
        .map_err(|e| Error::Corrupt(format!("live bitmap: {e}")))
}