glint-mask-tools 0.1.0

/// Configurable multi-file image loader.
///
/// This loader handles sensors where each capture consists of multiple separate files,
/// one for each band. The loader can be configured to work with different file naming
/// conventions and band schemes through configuration parameters.
use ndarray::Array3;
use regex::Regex;
use std::collections::HashMap;
use std::path::{Path, PathBuf};

use crate::core::{
    image_loader::{list_image_files, ImageCapture},
    ImageLoader,
};
use crate::error::{GlintError, Result};

/// Band naming scheme for multifile sensors
#[derive(Debug, Clone, PartialEq)]
pub enum BandScheme {
    /// Sequential numbering (1, 2, 3, 4, 5)
    Numbered { count: usize },
    /// Named bands (G, R, RE, NIR)
    Named { names: Vec<String> },
}

/// Configuration for a multifile image loader
#[derive(Debug, Clone)]
pub struct MultiFileLoaderConfig {
    /// Regex pattern to match base files (reference files) with named capture groups
    pub base_file_pattern: String,
    /// Template for generating filenames using captured groups and band identifiers
    pub filename_template: String,
    /// Band naming scheme
    pub band_scheme: BandScheme,
    /// Reference band identifier (the band used to find base files)
    pub reference_band: String,
    /// Supported file extensions
    pub extensions: Vec<String>,
    /// Bit depth of the sensor
    pub bit_depth: u8,
}

impl MultiFileLoaderConfig {
    /// Create a new multifile loader configuration
    pub fn new(
        base_file_pattern: String,
        filename_template: String,
        band_scheme: BandScheme,
        reference_band: String,
        extensions: Vec<String>,
        bit_depth: u8,
    ) -> Self {
        Self {
            base_file_pattern,
            filename_template,
            band_scheme,
            reference_band,
            extensions,
            bit_depth,
        }
    }

    /// Create configuration from a HashMap (typically from TOML loader_config)
    pub fn from_config(config: &HashMap<String, String>) -> Result<Self> {
        let base_file_pattern = config
            .get("base_file_pattern")
            .ok_or_else(|| GlintError::config("Missing base_file_pattern in loader_config"))?
            .clone();

        let filename_template = config
            .get("filename_template")
            .ok_or_else(|| GlintError::config("Missing filename_template in loader_config"))?
            .clone();

        let reference_band = config
            .get("reference_band")
            .ok_or_else(|| GlintError::config("Missing reference_band in loader_config"))?
            .clone();

        let extensions_str = config
            .get("extensions")
            .ok_or_else(|| GlintError::config("Missing extensions in loader_config"))?;
        let extensions: Vec<String> = extensions_str
            .split(',')
            .map(|s| s.trim().to_string())
            .collect();

        let bit_depth = config
            .get("bit_depth")
            .and_then(|s| s.parse::<u8>().ok())
            .unwrap_or(16); // Default to 16-bit

        let band_scheme = if let Some(scheme_str) = config.get("band_scheme") {
            match scheme_str.as_str() {
                "numbered" => {
                    let count = config
                        .get("band_count")
                        .and_then(|s| s.parse::<usize>().ok())
                        .ok_or_else(|| {
                            GlintError::config("Missing band_count for numbered band scheme")
                        })?;
                    BandScheme::Numbered { count }
                }
                "named" => {
                    let names_str = config.get("band_names").ok_or_else(|| {
                        GlintError::config("Missing band_names for named band scheme")
                    })?;
                    let names: Vec<String> =
                        names_str.split(',').map(|s| s.trim().to_string()).collect();
                    BandScheme::Named { names }
                }
                _ => {
                    return Err(GlintError::config(
                        "Invalid band_scheme. Must be 'numbered' or 'named'",
                    ))
                }
            }
        } else {
            return Err(GlintError::config("Missing band_scheme in loader_config"));
        };

        Ok(Self::new(
            base_file_pattern,
            filename_template,
            band_scheme,
            reference_band,
            extensions,
            bit_depth,
        ))
    }

    /// Get the expected number of bands
    pub fn band_count(&self) -> usize {
        match &self.band_scheme {
            BandScheme::Numbered { count } => *count,
            BandScheme::Named { names } => names.len(),
        }
    }

    /// Get the list of band identifiers
    pub fn band_identifiers(&self) -> Vec<String> {
        match &self.band_scheme {
            BandScheme::Numbered { count } => (1..=*count).map(|i| i.to_string()).collect(),
            BandScheme::Named { names } => names.clone(),
        }
    }
}

/// Configurable multi-file image loader
///
/// This loader can be configured to work with different multifile sensor formats
/// by providing appropriate configuration parameters for file patterns, band schemes,
/// and naming conventions.
#[derive(Debug, Clone)]
pub struct ConfigurableMultiFileLoader {
    /// Regex pattern to match base files
    base_pattern: Regex,
    /// Loader configuration
    config: MultiFileLoaderConfig,
}

impl ConfigurableMultiFileLoader {
    /// Create a new configurable multifile loader
    pub fn new(config: MultiFileLoaderConfig) -> Result<Self> {
        let base_pattern = Regex::new(&config.base_file_pattern)
            .map_err(|e| GlintError::validation(format!("Invalid base file pattern: {}", e)))?;

        Ok(Self {
            base_pattern,
            config,
        })
    }

    /// Create a loader from a configuration HashMap
    pub fn from_config(config: &HashMap<String, String>) -> Result<Self> {
        let loader_config = MultiFileLoaderConfig::from_config(config)?;
        Self::new(loader_config)
    }

    /// Extract capture groups from a filename using the configured pattern
    fn extract_filename_parts(&self, path: &Path) -> Option<HashMap<String, String>> {
        let filename = path.file_name()?.to_str()?;

        if let Some(captures) = self.base_pattern.captures(filename) {
            let mut parts = HashMap::new();

            // Extract all named capture groups
            for name in self.base_pattern.capture_names().flatten() {
                if let Some(matched) = captures.name(name) {
                    parts.insert(name.to_string(), matched.as_str().to_string());
                }
            }

            Some(parts)
        } else {
            None
        }
    }

    /// Find all band files for a given base file using template-based generation
    fn find_band_files(&self, base_file: &Path) -> Result<Vec<PathBuf>> {
        let filename_parts = self.extract_filename_parts(base_file).ok_or_else(|| {
            GlintError::processing("Could not extract filename parts from base file")
        })?;

        let parent_dir = base_file
            .parent()
            .ok_or_else(|| GlintError::processing("File has no parent directory"))?;

        let mut band_files = Vec::new();
        let band_identifiers = self.config.band_identifiers();

        for band_id in &band_identifiers {
            // Create a copy of the filename parts and replace the band with the current band_id
            let mut parts = filename_parts.clone();
            parts.insert("band".to_string(), band_id.clone());

            // Generate filename using the template
            let filename = self.generate_filename_from_template(&parts)?;
            let band_path = parent_dir.join(filename);

            if !band_path.exists() {
                return Err(GlintError::MissingFiles {
                    files: vec![band_path],
                });
            }

            band_files.push(band_path);
        }

        Ok(band_files)
    }

    /// Generate a filename from the template using captured parts
    fn generate_filename_from_template(&self, parts: &HashMap<String, String>) -> Result<String> {
        let mut filename = self.config.filename_template.clone();

        // Replace placeholders in the template with actual values
        for (key, value) in parts {
            let placeholder = format!("{{{}}}", key);
            filename = filename.replace(&placeholder, value);
        }

        // Check if any placeholders remain unreplaced
        if filename.contains('{') && filename.contains('}') {
            return Err(GlintError::processing(format!(
                "Template contains unreplaced placeholders: {}",
                filename
            )));
        }

        Ok(filename)
    }

    /// Generate a capture ID from the extracted filename parts
    fn generate_capture_id(&self, parts: &HashMap<String, String>) -> String {
        // Priority order for creating capture ID:
        // 1. If there's a "base" part, use it
        // 2. If there's a "prefix" part, use it
        // 3. Combine parts intelligently based on the pattern

        if let Some(base) = parts.get("base") {
            return base.clone();
        }

        if let Some(prefix) = parts.get("prefix") {
            return prefix.clone();
        }

        // Try to construct a meaningful ID from available parts
        let mut id_parts = Vec::new();

        // Common parts that make good identifiers
        for key in ["prefix", "sequence", "number", "id", "capture"] {
            if let Some(value) = parts.get(key) {
                id_parts.push(value.clone());
            }
        }

        if !id_parts.is_empty() {
            id_parts.join("_")
        } else {
            // Fallback: use the first non-band, non-extension part
            parts
                .iter()
                .filter(|(k, _)| !matches!(k.as_str(), "band" | "extension" | "ext"))
                .map(|(_, v)| v.clone())
                .next()
                .unwrap_or_else(|| "unknown".to_string())
        }
    }

    /// Load multiple band files and stack them into a single array
    fn load_band_files(&self, band_files: &[PathBuf]) -> Result<Array3<f64>> {
        let expected_count = self.config.band_count();
        if band_files.len() != expected_count {
            return Err(GlintError::BandCountMismatch {
                expected: expected_count,
                actual: band_files.len(),
            });
        }

        // Load all band images
        let mut band_arrays = Vec::new();
        let mut height = 0;
        let mut width = 0;

        for (i, band_path) in band_files.iter().enumerate() {
            let img = image::open(band_path)?;

            // Convert to grayscale since each file contains one band
            let gray_img = img.to_luma16();
            let (w, h) = gray_img.dimensions();

            // Check dimensions consistency
            if i == 0 {
                height = h as usize;
                width = w as usize;
            } else if h as usize != height || w as usize != width {
                return Err(GlintError::DimensionMismatch {
                    expected: (width as u32, height as u32),
                    actual: (w, h),
                });
            }

            // Convert to f64 array
            let data: Vec<f64> = gray_img.into_raw().into_iter().map(|x| x as f64).collect();
            let band_array = ndarray::Array2::from_shape_vec((height, width), data)
                .map_err(|_| GlintError::processing("Failed to reshape band data"))?;

            band_arrays.push(band_array);
        }

        // Stack bands into 3D array
        let mut stacked_data = Vec::with_capacity(height * width * expected_count);

        for y in 0..height {
            for x in 0..width {
                for band in &band_arrays {
                    stacked_data.push(band[[y, x]]);
                }
            }
        }

        let result = Array3::from_shape_vec((height, width, expected_count), stacked_data)
            .map_err(|_| GlintError::processing("Failed to create stacked array"))?;

        Ok(result)
    }
}

impl ImageLoader for ConfigurableMultiFileLoader {
    fn as_any(&self) -> &dyn std::any::Any {
        self
    }

    fn discover_captures(&self, input_dir: &Path, output_dir: &Path) -> Result<Vec<ImageCapture>> {
        // List all potential image files
        let all_files = list_image_files(input_dir, &self.config.extensions)?;

        let mut captures = Vec::new();

        // Find base files (files matching the base pattern)
        for file_path in all_files {
            let filename = file_path.file_name().and_then(|n| n.to_str()).unwrap_or("");

            if self.base_pattern.is_match(filename) {
                // This is a base file, find all its band files
                match self.find_band_files(&file_path) {
                    Ok(band_files) => {
                        // Extract filename parts to create a meaningful capture ID
                        let filename_parts =
                            self.extract_filename_parts(&file_path).unwrap_or_else(|| {
                                let mut parts = HashMap::new();
                                parts.insert("unknown".to_string(), "capture".to_string());
                                parts
                            });

                        // Create a clean ID for the capture based on captured parts
                        let id = self.generate_capture_id(&filename_parts);

                        let mask_paths = self.generate_mask_paths(
                            &ImageCapture {
                                id: id.clone(),
                                paths: band_files.clone(),
                                mask_paths: Vec::new(),
                            },
                            output_dir,
                        );

                        captures.push(ImageCapture {
                            id,
                            paths: band_files,
                            mask_paths,
                        });
                    }
                    Err(e) => {
                        // Log warning but continue processing other files
                        eprintln!(
                            "Warning: Could not load band files for {:?}: {}",
                            file_path, e
                        );
                    }
                }
            }
        }

        // Sort captures by ID for consistent ordering
        captures.sort_by(|a, b| a.id.cmp(&b.id));

        Ok(captures)
    }

    fn load_image(&self, capture: &ImageCapture) -> Result<Array3<f64>> {
        if capture.paths.len() != self.expected_file_count() {
            return Err(GlintError::validation(format!(
                "Configurable multifile loader expects exactly {} files, got {}",
                self.expected_file_count(),
                capture.paths.len()
            )));
        }

        // Verify all files exist
        for path in &capture.paths {
            if !path.exists() {
                return Err(GlintError::MissingFiles {
                    files: vec![path.clone()],
                });
            }
        }

        self.load_band_files(&capture.paths)
    }

    fn band_count(&self) -> usize {
        self.config.band_count()
    }

    fn bit_depth(&self) -> u8 {
        self.config.bit_depth
    }

    fn supported_extensions(&self) -> Vec<String> {
        self.config.extensions.clone()
    }

    fn expected_file_count(&self) -> usize {
        self.config.band_count()
    }
}

#[cfg(test)]
mod tests {
    use super::*;
    use std::fs;
    use tempfile::tempdir;

    #[test]
    fn test_multifile_loader_config_from_hashmap() {
        let mut config = HashMap::new();
        config.insert(
            "base_file_pattern".to_string(),
            "^(?P<base>IMG_\\d{4})_(?P<band>1)(?P<extension>\\.tif)$".to_string(),
        );
        config.insert(
            "filename_template".to_string(),
            "{base}_{band}{extension}".to_string(),
        );
        config.insert("band_scheme".to_string(), "numbered".to_string());
        config.insert("band_count".to_string(), "5".to_string());
        config.insert("reference_band".to_string(), "1".to_string());
        config.insert("extensions".to_string(), "tif,tiff".to_string());
        config.insert("bit_depth".to_string(), "16".to_string());

        let loader_config = MultiFileLoaderConfig::from_config(&config).unwrap();
        assert_eq!(loader_config.band_count(), 5);
        assert_eq!(loader_config.bit_depth, 16);
        assert_eq!(loader_config.extensions, vec!["tif", "tiff"]);

        match loader_config.band_scheme {
            BandScheme::Numbered { count } => assert_eq!(count, 5),
            _ => panic!("Expected numbered band scheme"),
        }
    }

    #[test]
    fn test_multifile_loader_config_named_bands() {
        let mut config = HashMap::new();
        config.insert(
            "base_file_pattern".to_string(),
            "^(?P<base>DJI_\\d+_\\d+_MS)_(?P<band>G)(?P<extension>\\.TIF)$".to_string(),
        );
        config.insert(
            "filename_template".to_string(),
            "{base}_{band}{extension}".to_string(),
        );
        config.insert("band_scheme".to_string(), "named".to_string());
        config.insert("band_names".to_string(), "G,R,RE,NIR".to_string());
        config.insert("reference_band".to_string(), "G".to_string());
        config.insert("extensions".to_string(), "TIF,tif".to_string());

        let loader_config = MultiFileLoaderConfig::from_config(&config).unwrap();
        assert_eq!(loader_config.band_count(), 4);
        assert_eq!(loader_config.bit_depth, 16); // Default

        match loader_config.band_scheme {
            BandScheme::Named { names } => {
                assert_eq!(names, vec!["G", "R", "RE", "NIR"]);
            }
            _ => panic!("Expected named band scheme"),
        }
    }

    #[test]
    fn test_configurable_multifile_loader_creation() {
        let config = MultiFileLoaderConfig::new(
            "^(?P<base>IMG_\\d{4})_(?P<band>1)(?P<extension>\\.tif)$".to_string(),
            "{base}_{band}{extension}".to_string(),
            BandScheme::Numbered { count: 5 },
            "1".to_string(),
            vec!["tif".to_string(), "tiff".to_string()],
            16,
        );

        let loader = ConfigurableMultiFileLoader::new(config).unwrap();
        assert_eq!(loader.band_count(), 5);
        assert_eq!(loader.bit_depth(), 16);
        assert_eq!(loader.expected_file_count(), 5);
        assert!(loader.supported_extensions().contains(&"tif".to_string()));
    }

    #[test]
    fn test_micasense_pattern_capture_groups() {
        let config = MultiFileLoaderConfig::new(
            "^(?P<base>IMG_\\d{4})_(?P<band>1)(?P<extension>\\.tif)$".to_string(),
            "{base}_{band}{extension}".to_string(),
            BandScheme::Numbered { count: 5 },
            "1".to_string(),
            vec!["tif".to_string()],
            16,
        );
        let loader = ConfigurableMultiFileLoader::new(config).unwrap();

        let path = Path::new("IMG_0001_1.tif");
        let parts = loader.extract_filename_parts(path).unwrap();
        assert_eq!(parts.get("base"), Some(&"IMG_0001".to_string()));
        assert_eq!(parts.get("band"), Some(&"1".to_string()));
        assert_eq!(parts.get("extension"), Some(&".tif".to_string()));
    }

    #[test]
    fn test_dji_p4ms_pattern_capture_groups() {
        let config = MultiFileLoaderConfig::new(
            "^(?P<base>DJI_\\d{3})(?P<band>1)(?P<extension>\\.TIF)$".to_string(),
            "{base}{band}{extension}".to_string(),
            BandScheme::Numbered { count: 5 },
            "1".to_string(),
            vec!["TIF".to_string()],
            16,
        );
        let loader = ConfigurableMultiFileLoader::new(config).unwrap();

        let path = Path::new("DJI_0001.TIF");
        let parts = loader.extract_filename_parts(path).unwrap();
        assert_eq!(parts.get("base"), Some(&"DJI_000".to_string()));
        assert_eq!(parts.get("band"), Some(&"1".to_string()));
        assert_eq!(parts.get("extension"), Some(&".TIF".to_string()));
    }

    #[test]
    fn test_dji_m3m_pattern_capture_groups() {
        let config = MultiFileLoaderConfig::new(
            "^(?P<base>DJI_\\d+_\\d+_MS)_(?P<band>G)(?P<extension>\\.TIF)$".to_string(),
            "{base}_{band}{extension}".to_string(),
            BandScheme::Named {
                names: vec![
                    "G".to_string(),
                    "R".to_string(),
                    "RE".to_string(),
                    "NIR".to_string(),
                ],
            },
            "G".to_string(),
            vec!["TIF".to_string()],
            16,
        );
        let loader = ConfigurableMultiFileLoader::new(config).unwrap();

        let path = Path::new("DJI_20221208115250_0001_MS_G.TIF");
        let parts = loader.extract_filename_parts(path).unwrap();
        assert_eq!(
            parts.get("base"),
            Some(&"DJI_20221208115250_0001_MS".to_string())
        );
        assert_eq!(parts.get("band"), Some(&"G".to_string()));
        assert_eq!(parts.get("extension"), Some(&".TIF".to_string()));
    }

    #[test]
    fn test_discover_captures_micasense_pattern() {
        let temp_dir = tempdir().unwrap();
        let input_dir = temp_dir.path().join("input");
        let output_dir = temp_dir.path().join("output");
        fs::create_dir_all(&input_dir).unwrap();
        fs::create_dir_all(&output_dir).unwrap();

        // Create test files for MicaSense pattern
        let base_files = ["IMG_0001", "IMG_0002"];
        for base in &base_files {
            for band in 1..=5 {
                let filename = format!("{}_{}.tif", base, band);
                let filepath = input_dir.join(filename);
                fs::write(&filepath, b"fake image data").unwrap();
            }
        }

        let config = MultiFileLoaderConfig::new(
            "^(?P<base>IMG_\\d{4})_(?P<band>1)(?P<extension>\\.tif)$".to_string(),
            "{base}_{band}{extension}".to_string(),
            BandScheme::Numbered { count: 5 },
            "1".to_string(),
            vec!["tif".to_string()],
            16,
        );
        let loader = ConfigurableMultiFileLoader::new(config).unwrap();
        let captures = loader.discover_captures(&input_dir, &output_dir).unwrap();

        assert_eq!(captures.len(), 2);
        assert_eq!(captures[0].id, "IMG_0001");
        assert_eq!(captures[1].id, "IMG_0002");

        // Each capture should have 5 files and 5 mask paths
        for capture in &captures {
            assert_eq!(capture.paths.len(), 5);
            assert_eq!(capture.mask_paths.len(), 5);
            for mask_path in &capture.mask_paths {
                assert!(mask_path.to_string_lossy().contains("_mask.png"));
            }
        }
    }

    #[test]
    fn test_template_filename_generation() {
        let config = MultiFileLoaderConfig::new(
            "^(?P<base>DJI_\\d{3})(?P<band>1)(?P<extension>\\.TIF)$".to_string(),
            "{base}{band}{extension}".to_string(),
            BandScheme::Numbered { count: 5 },
            "1".to_string(),
            vec!["TIF".to_string()],
            16,
        );
        let loader = ConfigurableMultiFileLoader::new(config).unwrap();

        // Test that template generation works for different bands
        let mut parts = std::collections::HashMap::new();
        parts.insert("base".to_string(), "DJI_000".to_string());
        parts.insert("band".to_string(), "2".to_string());
        parts.insert("extension".to_string(), ".TIF".to_string());

        let filename = loader.generate_filename_from_template(&parts).unwrap();
        assert_eq!(filename, "DJI_0002.TIF");

        // Test MicaSense template
        let config = MultiFileLoaderConfig::new(
            "^(?P<base>IMG_\\d{4})_(?P<band>1)(?P<extension>\\.tif)$".to_string(),
            "{base}_{band}{extension}".to_string(),
            BandScheme::Numbered { count: 5 },
            "1".to_string(),
            vec!["tif".to_string()],
            16,
        );
        let loader = ConfigurableMultiFileLoader::new(config).unwrap();

        let mut parts = std::collections::HashMap::new();
        parts.insert("base".to_string(), "IMG_0001".to_string());
        parts.insert("band".to_string(), "3".to_string());
        parts.insert("extension".to_string(), ".tif".to_string());

        let filename = loader.generate_filename_from_template(&parts).unwrap();
        assert_eq!(filename, "IMG_0001_3.tif");
    }
}