gff_diff 0.1.1

A tool to generate a diff (in JSON format) between two GFF3 files.
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171

{
  "changes": [
    {
      "action": "add",
      "added_element": {
        "attributes": {
          "ID": [
            "E0008"
          ],
          "Parent": [
            "M0002"
          ]
        },
        "end": 500,
        "feature_type": "exon",
        "frame": ".",
        "score": ".",
        "seqname": "Scaffold0",
        "source": ".",
        "start": 400,
        "strand": "+"
      },
      "id": "E0008",
      "what": "row"
    },
    {
      "action": "add",
      "added_element": {
        "attributes": {
          "ID": [
            "C0002"
          ],
          "Parent": [
            "M0002"
          ]
        },
        "end": 300,
        "feature_type": "CDS",
        "frame": ".",
        "score": ".",
        "seqname": "Scaffold0",
        "source": ".",
        "start": 200,
        "strand": "+"
      },
      "id": "C0002_CDS_200_300",
      "what": "row"
    },
    {
      "action": "add",
      "added_element": {
        "attributes": {
          "ID": [
            "E0007"
          ],
          "Parent": [
            "M0002"
          ]
        },
        "end": 300,
        "feature_type": "exon",
        "frame": ".",
        "score": ".",
        "seqname": "Scaffold0",
        "source": ".",
        "start": 200,
        "strand": "+"
      },
      "id": "E0007",
      "what": "row"
    },
    {
      "action": "add",
      "added_element": {
        "attributes": {
          "ID": [
            "M0002"
          ],
          "Name": [
            "mRNA2"
          ],
          "Parent": [
            "G0001"
          ],
          "status": [
            "Finished"
          ]
        },
        "end": 500,
        "feature_type": "mRNA",
        "frame": ".",
        "score": ".",
        "seqname": "Scaffold0",
        "source": ".",
        "start": 1,
        "strand": "+"
      },
      "id": "M0002",
      "what": "row"
    },
    {
      "action": "add",
      "added_element": {
        "attributes": {
          "ID": [
            "E0006"
          ],
          "Parent": [
            "M0002"
          ]
        },
        "end": 100,
        "feature_type": "exon",
        "frame": ".",
        "score": ".",
        "seqname": "Scaffold0",
        "source": ".",
        "start": 1,
        "strand": "+"
      },
      "id": "E0006",
      "what": "row"
    },
    {
      "action": "add",
      "added_element": {
        "attributes": {
          "ID": [
            "C0001"
          ],
          "Parent": [
            "M0002"
          ]
        },
        "end": 100,
        "feature_type": "CDS",
        "frame": ".",
        "score": ".",
        "seqname": "Scaffold0",
        "source": ".",
        "start": 1,
        "strand": "+"
      },
      "id": "C0001_CDS_1_100",
      "what": "row"
    },
    {
      "action": "add",
      "added_element": {
        "attributes": {
          "ID": [
            "C0003"
          ],
          "Parent": [
            "M0002"
          ]
        },
        "end": 500,
        "feature_type": "CDS",
        "frame": ".",
        "score": ".",
        "seqname": "Scaffold0",
        "source": ".",
        "start": 400,
        "strand": "+"
      },
      "id": "C0003_CDS_400_500",
      "what": "row"
    }
  ]
}