version = 4
[[package]]
name = "adler2"
version = "2.0.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "320119579fcad9c21884f5c4861d16174d0e06250625266f50fe6898340abefa"
[[package]]
name = "aho-corasick"
version = "1.1.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ddd31a130427c27518df266943a5308ed92d4b226cc639f5a8f1002816174301"
dependencies = [
"memchr",
]
[[package]]
name = "anstream"
version = "0.6.21"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "43d5b281e737544384e969a5ccad3f1cdd24b48086a0fc1b2a5262a26b8f4f4a"
dependencies = [
"anstyle",
"anstyle-parse",
"anstyle-query",
"anstyle-wincon",
"colorchoice",
"is_terminal_polyfill",
"utf8parse",
]
[[package]]
name = "anstyle"
version = "1.0.13"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5192cca8006f1fd4f7237516f40fa183bb07f8fbdfedaa0036de5ea9b0b45e78"
[[package]]
name = "anstyle-parse"
version = "0.2.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4e7644824f0aa2c7b9384579234ef10eb7efb6a0deb83f9630a49594dd9c15c2"
dependencies = [
"utf8parse",
]
[[package]]
name = "anstyle-query"
version = "1.1.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "40c48f72fd53cd289104fc64099abca73db4166ad86ea0b4341abe65af83dadc"
dependencies = [
"windows-sys",
]
[[package]]
name = "anstyle-wincon"
version = "3.0.11"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "291e6a250ff86cd4a820112fb8898808a366d8f9f58ce16d1f538353ad55747d"
dependencies = [
"anstyle",
"once_cell_polyfill",
"windows-sys",
]
[[package]]
name = "anyhow"
version = "1.0.102"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7f202df86484c868dbad7eaa557ef785d5c66295e41b460ef922eca0723b842c"
[[package]]
name = "approx"
version = "0.5.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "cab112f0a86d568ea0e627cc1d6be74a1e9cd55214684db5561995f6dad897c6"
dependencies = [
"num-traits",
]
[[package]]
name = "assert_cmd"
version = "2.2.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9a686bbee5efb88a82df0621b236e74d925f470e5445d3220a5648b892ec99c9"
dependencies = [
"anstyle",
"bstr",
"libc",
"predicates",
"predicates-core",
"predicates-tree",
"wait-timeout",
]
[[package]]
name = "autocfg"
version = "1.5.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c08606f8c3cbf4ce6ec8e28fb0014a2c086708fe954eaa885384a6165172e7e8"
[[package]]
name = "bio"
version = "2.3.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "add46f280e82963d4abb6f2c78f491a1f45be23ba27516856a1efbf194107bb7"
dependencies = [
"anyhow",
"approx",
"bio-types",
"bit-set",
"bv",
"bytecount",
"csv",
"custom_derive",
"editdistancek",
"enum-map",
"fxhash",
"itertools",
"itertools-num",
"lazy_static",
"multimap",
"ndarray",
"newtype_derive",
"num-integer",
"num-traits",
"ordered-float",
"petgraph 0.8.3",
"regex",
"serde",
"serde_derive",
"statrs",
"strum",
"strum_macros",
"thiserror 2.0.18",
"triple_accel",
"vec_map",
]
[[package]]
name = "bio-types"
version = "1.0.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f4dcf54f8b7f51450207d54780bab09c05f30b8b0caa991545082842e466ad7e"
dependencies = [
"derive-new",
"lazy_static",
"regex",
"strum_macros",
"thiserror 1.0.69",
]
[[package]]
name = "bit-set"
version = "0.8.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "08807e080ed7f9d5433fa9b275196cfc35414f66a0c79d864dc51a0d825231a3"
dependencies = [
"bit-vec",
]
[[package]]
name = "bit-vec"
version = "0.8.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5e764a1d40d510daf35e07be9eb06e75770908c27d411ee6c92109c9840eaaf7"
[[package]]
name = "bitflags"
version = "2.11.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "843867be96c8daad0d758b57df9392b6d8d271134fce549de6ce169ff98a92af"
[[package]]
name = "bstr"
version = "1.12.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "63044e1ae8e69f3b5a92c736ca6269b8d12fa7efe39bf34ddb06d102cf0e2cab"
dependencies = [
"memchr",
"regex-automata",
"serde",
]
[[package]]
name = "bv"
version = "0.11.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8834bb1d8ee5dc048ee3124f2c7c1afcc6bc9aed03f11e9dfd8c69470a5db340"
dependencies = [
"feature-probe",
"serde",
]
[[package]]
name = "bytecount"
version = "0.6.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "175812e0be2bccb6abe50bb8d566126198344f707e304f45c648fd8f2cc0365e"
[[package]]
name = "bytemuck"
version = "1.25.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c8efb64bd706a16a1bdde310ae86b351e4d21550d98d056f22f8a7f7a2183fec"
[[package]]
name = "byteorder"
version = "1.5.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1fd0f2584146f6f2ef48085050886acf353beff7305ebd1ae69500e27c67f64b"
[[package]]
name = "cfg-if"
version = "1.0.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9330f8b2ff13f34540b44e946ef35111825727b38d33286ef986142615121801"
[[package]]
name = "clap"
version = "4.5.60"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2797f34da339ce31042b27d23607e051786132987f595b02ba4f6a6dffb7030a"
dependencies = [
"clap_builder",
"clap_derive",
]
[[package]]
name = "clap_builder"
version = "4.5.60"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "24a241312cea5059b13574bb9b3861cabf758b879c15190b37b6d6fd63ab6876"
dependencies = [
"anstream",
"anstyle",
"clap_lex",
"strsim",
]
[[package]]
name = "clap_derive"
version = "4.5.55"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a92793da1a46a5f2a02a6f4c46c6496b28c43638adea8306fcb0caa1634f24e5"
dependencies = [
"heck",
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "clap_lex"
version = "1.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3a822ea5bc7590f9d40f1ba12c0dc3c2760f3482c6984db1573ad11031420831"
[[package]]
name = "colorchoice"
version = "1.0.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b05b61dc5112cbb17e4b6cd61790d9845d13888356391624cbe7e41efeac1e75"
[[package]]
name = "crc32fast"
version = "1.5.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9481c1c90cbf2ac953f07c8d4a58aa3945c425b7185c9154d67a65e4230da511"
dependencies = [
"cfg-if",
]
[[package]]
name = "crossbeam-deque"
version = "0.8.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9dd111b7b7f7d55b72c0a6ae361660ee5853c9af73f70c3c2ef6858b950e2e51"
dependencies = [
"crossbeam-epoch",
"crossbeam-utils",
]
[[package]]
name = "crossbeam-epoch"
version = "0.9.18"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5b82ac4a3c2ca9c3460964f020e1402edd5753411d7737aa39c3714ad1b5420e"
dependencies = [
"crossbeam-utils",
]
[[package]]
name = "crossbeam-utils"
version = "0.8.21"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d0a5c400df2834b80a4c3327b3aad3a4c4cd4de0629063962b03235697506a28"
[[package]]
name = "csv"
version = "1.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "52cd9d68cf7efc6ddfaaee42e7288d3a99d613d4b50f76ce9827ae0c6e14f938"
dependencies = [
"csv-core",
"itoa",
"ryu",
"serde_core",
]
[[package]]
name = "csv-core"
version = "0.1.13"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "704a3c26996a80471189265814dbc2c257598b96b8a7feae2d31ace646bb9782"
dependencies = [
"memchr",
]
[[package]]
name = "custom_derive"
version = "0.1.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ef8ae57c4978a2acd8b869ce6b9ca1dfe817bff704c220209fdef2c0b75a01b9"
[[package]]
name = "derive-new"
version = "0.6.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d150dea618e920167e5973d70ae6ece4385b7164e0d799fe7c122dd0a5d912ad"
dependencies = [
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "difflib"
version = "0.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6184e33543162437515c2e2b48714794e37845ec9851711914eec9d308f6ebe8"
[[package]]
name = "editdistancek"
version = "1.0.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3e02df23d5b1c6f9e69fa603b890378123b93073df998a21e6e33b9db0a32613"
[[package]]
name = "either"
version = "1.15.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "48c757948c5ede0e46177b7add2e67155f70e33c07fea8284df6576da70b3719"
[[package]]
name = "enum-map"
version = "2.7.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6866f3bfdf8207509a033af1a75a7b08abda06bbaaeae6669323fd5a097df2e9"
dependencies = [
"enum-map-derive",
]
[[package]]
name = "enum-map-derive"
version = "0.17.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f282cfdfe92516eb26c2af8589c274c7c17681f5ecc03c18255fe741c6aa64eb"
dependencies = [
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "equivalent"
version = "1.0.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "877a4ace8713b0bcf2a4e7eec82529c029f1d0619886d18145fea96c3ffe5c0f"
[[package]]
name = "errno"
version = "0.3.14"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "39cab71617ae0d63f51a36d69f866391735b51691dbda63cf6f96d042b63efeb"
dependencies = [
"libc",
"windows-sys",
]
[[package]]
name = "fastrand"
version = "2.3.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "37909eebbb50d72f9059c3b6d82c0463f2ff062c9e95845c43a6c9c0355411be"
[[package]]
name = "feature-probe"
version = "0.1.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "835a3dc7d1ec9e75e2b5fb4ba75396837112d2060b03f7d43bc1897c7f7211da"
[[package]]
name = "fixedbitset"
version = "0.5.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1d674e81391d1e1ab681a28d99df07927c6d4aa5b027d7da16ba32d1d21ecd99"
[[package]]
name = "flate2"
version = "1.1.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "843fba2746e448b37e26a819579957415c8cef339bf08564fe8b7ddbd959573c"
dependencies = [
"crc32fast",
"miniz_oxide",
]
[[package]]
name = "float-cmp"
version = "0.10.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b09cf3155332e944990140d967ff5eceb70df778b34f77d8075db46e4704e6d8"
dependencies = [
"num-traits",
]
[[package]]
name = "foldhash"
version = "0.1.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d9c4f5dac5e15c24eb999c26181a6ca40b39fe946cbe4c263c7209467bc83af2"
[[package]]
name = "fxhash"
version = "0.2.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c31b6d751ae2c7f11320402d34e41349dd1016f8d5d45e48c4312bc8625af50c"
dependencies = [
"byteorder",
]
[[package]]
name = "genomic-system-finder-cli"
version = "0.1.2"
dependencies = [
"assert_cmd",
"clap",
"genomic-system-finder-core",
"predicates",
"tempfile",
]
[[package]]
name = "genomic-system-finder-core"
version = "0.1.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8971bfeb5430e6468e345a8bea57c94e01156e0ca7aee6df4fd51237e33b7320"
dependencies = [
"bio",
"flate2",
"genomic-system-finder-hmm",
"petgraph 0.7.1",
"quick-xml",
"rayon",
"regex",
"serde",
"serde_json",
"thiserror 2.0.18",
"toml",
]
[[package]]
name = "genomic-system-finder-hmm"
version = "0.1.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "411a1ec647f9968487e22339bae7b9072c362a9ff21f220ded33c34ea8d75d83"
dependencies = [
"thiserror 2.0.18",
]
[[package]]
name = "getrandom"
version = "0.2.17"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ff2abc00be7fca6ebc474524697ae276ad847ad0a6b3faa4bcb027e9a4614ad0"
dependencies = [
"cfg-if",
"libc",
"wasi",
]
[[package]]
name = "getrandom"
version = "0.4.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0de51e6874e94e7bf76d726fc5d13ba782deca734ff60d5bb2fb2607c7406555"
dependencies = [
"cfg-if",
"libc",
"r-efi",
"wasip2",
"wasip3",
]
[[package]]
name = "hashbrown"
version = "0.15.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9229cfe53dfd69f0609a49f65461bd93001ea1ef889cd5529dd176593f5338a1"
dependencies = [
"foldhash",
]
[[package]]
name = "hashbrown"
version = "0.16.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "841d1cc9bed7f9236f321df977030373f4a4163ae1a7dbfe1a51a2c1a51d9100"
[[package]]
name = "heck"
version = "0.5.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2304e00983f87ffb38b55b444b5e3b60a884b5d30c0fca7d82fe33449bbe55ea"
[[package]]
name = "id-arena"
version = "2.3.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3d3067d79b975e8844ca9eb072e16b31c3c1c36928edf9c6789548c524d0d954"
[[package]]
name = "indexmap"
version = "2.13.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7714e70437a7dc3ac8eb7e6f8df75fd8eb422675fc7678aff7364301092b1017"
dependencies = [
"equivalent",
"hashbrown 0.16.1",
"serde",
"serde_core",
]
[[package]]
name = "is_terminal_polyfill"
version = "1.70.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a6cb138bb79a146c1bd460005623e142ef0181e3d0219cb493e02f7d08a35695"
[[package]]
name = "itertools"
version = "0.14.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2b192c782037fadd9cfa75548310488aabdbf3d2da73885b31bd0abd03351285"
dependencies = [
"either",
]
[[package]]
name = "itertools-num"
version = "0.1.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a872a22f9e6f7521ca557660adb96dd830e54f0f490fa115bb55dd69d38b27e7"
dependencies = [
"num-traits",
]
[[package]]
name = "itoa"
version = "1.0.17"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "92ecc6618181def0457392ccd0ee51198e065e016d1d527a7ac1b6dc7c1f09d2"
[[package]]
name = "lazy_static"
version = "1.5.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bbd2bcb4c963f2ddae06a2efc7e9f3591312473c50c6685e1f298068316e66fe"
[[package]]
name = "leb128fmt"
version = "0.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "09edd9e8b54e49e587e4f6295a7d29c3ea94d469cb40ab8ca70b288248a81db2"
[[package]]
name = "libc"
version = "0.2.183"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b5b646652bf6661599e1da8901b3b9522896f01e736bad5f723fe7a3a27f899d"
[[package]]
name = "libm"
version = "0.2.16"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b6d2cec3eae94f9f509c767b45932f1ada8350c4bdb85af2fcab4a3c14807981"
[[package]]
name = "linux-raw-sys"
version = "0.12.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "32a66949e030da00e8c7d4434b251670a91556f4144941d37452769c25d58a53"
[[package]]
name = "log"
version = "0.4.29"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5e5032e24019045c762d3c0f28f5b6b8bbf38563a65908389bf7978758920897"
[[package]]
name = "matrixmultiply"
version = "0.3.10"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a06de3016e9fae57a36fd14dba131fccf49f74b40b7fbdb472f96e361ec71a08"
dependencies = [
"autocfg",
"rawpointer",
]
[[package]]
name = "memchr"
version = "2.8.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f8ca58f447f06ed17d5fc4043ce1b10dd205e060fb3ce5b979b8ed8e59ff3f79"
[[package]]
name = "miniz_oxide"
version = "0.8.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1fa76a2c86f704bdb222d66965fb3d63269ce38518b83cb0575fca855ebb6316"
dependencies = [
"adler2",
"simd-adler32",
]
[[package]]
name = "multimap"
version = "0.10.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1d87ecb2933e8aeadb3e3a02b828fed80a7528047e68b4f424523a0981a3a084"
dependencies = [
"serde",
]
[[package]]
name = "nalgebra"
version = "0.33.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "26aecdf64b707efd1310e3544d709c5c0ac61c13756046aaaba41be5c4f66a3b"
dependencies = [
"approx",
"matrixmultiply",
"num-complex",
"num-rational",
"num-traits",
"rand",
"rand_distr",
"simba",
"typenum",
]
[[package]]
name = "ndarray"
version = "0.16.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "882ed72dce9365842bf196bdeedf5055305f11fc8c03dee7bb0194a6cad34841"
dependencies = [
"matrixmultiply",
"num-complex",
"num-integer",
"num-traits",
"portable-atomic",
"portable-atomic-util",
"rawpointer",
]
[[package]]
name = "newtype_derive"
version = "0.1.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ac8cd24d9f185bb7223958d8c1ff7a961b74b1953fd05dba7cc568a63b3861ec"
dependencies = [
"rustc_version",
]
[[package]]
name = "normalize-line-endings"
version = "0.3.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "61807f77802ff30975e01f4f071c8ba10c022052f98b3294119f3e615d13e5be"
[[package]]
name = "num-bigint"
version = "0.4.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a5e44f723f1133c9deac646763579fdb3ac745e418f2a7af9cd0c431da1f20b9"
dependencies = [
"num-integer",
"num-traits",
]
[[package]]
name = "num-complex"
version = "0.4.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "73f88a1307638156682bada9d7604135552957b7818057dcef22705b4d509495"
dependencies = [
"num-traits",
]
[[package]]
name = "num-integer"
version = "0.1.46"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7969661fd2958a5cb096e56c8e1ad0444ac2bbcd0061bd28660485a44879858f"
dependencies = [
"num-traits",
]
[[package]]
name = "num-rational"
version = "0.4.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f83d14da390562dca69fc84082e73e548e1ad308d24accdedd2720017cb37824"
dependencies = [
"num-bigint",
"num-integer",
"num-traits",
]
[[package]]
name = "num-traits"
version = "0.2.19"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "071dfc062690e90b734c0b2273ce72ad0ffa95f0c74596bc250dcfd960262841"
dependencies = [
"autocfg",
"libm",
]
[[package]]
name = "once_cell"
version = "1.21.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "42f5e15c9953c5e4ccceeb2e7382a716482c34515315f7b03532b8b4e8393d2d"
[[package]]
name = "once_cell_polyfill"
version = "1.70.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "384b8ab6d37215f3c5301a95a4accb5d64aa607f1fcb26a11b5303878451b4fe"
[[package]]
name = "ordered-float"
version = "5.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7f4779c6901a562440c3786d08192c6fbda7c1c2060edd10006b05ee35d10f2d"
dependencies = [
"num-traits",
]
[[package]]
name = "paste"
version = "1.0.15"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "57c0d7b74b563b49d38dae00a0c37d4d6de9b432382b2892f0574ddcae73fd0a"
[[package]]
name = "petgraph"
version = "0.7.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3672b37090dbd86368a4145bc067582552b29c27377cad4e0a306c97f9bd7772"
dependencies = [
"fixedbitset",
"indexmap",
]
[[package]]
name = "petgraph"
version = "0.8.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8701b58ea97060d5e5b155d383a69952a60943f0e6dfe30b04c287beb0b27455"
dependencies = [
"fixedbitset",
"hashbrown 0.15.5",
"indexmap",
"serde",
]
[[package]]
name = "portable-atomic"
version = "1.13.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c33a9471896f1c69cecef8d20cbe2f7accd12527ce60845ff44c153bb2a21b49"
[[package]]
name = "portable-atomic-util"
version = "0.2.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7a9db96d7fa8782dd8c15ce32ffe8680bbd1e978a43bf51a34d39483540495f5"
dependencies = [
"portable-atomic",
]
[[package]]
name = "ppv-lite86"
version = "0.2.21"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "85eae3c4ed2f50dcfe72643da4befc30deadb458a9b590d720cde2f2b1e97da9"
dependencies = [
"zerocopy",
]
[[package]]
name = "predicates"
version = "3.1.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ada8f2932f28a27ee7b70dd6c1c39ea0675c55a36879ab92f3a715eaa1e63cfe"
dependencies = [
"anstyle",
"difflib",
"float-cmp",
"normalize-line-endings",
"predicates-core",
"regex",
]
[[package]]
name = "predicates-core"
version = "1.0.10"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "cad38746f3166b4031b1a0d39ad9f954dd291e7854fcc0eed52ee41a0b50d144"
[[package]]
name = "predicates-tree"
version = "1.0.13"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d0de1b847b39c8131db0467e9df1ff60e6d0562ab8e9a16e568ad0fdb372e2f2"
dependencies = [
"predicates-core",
"termtree",
]
[[package]]
name = "prettyplease"
version = "0.2.37"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "479ca8adacdd7ce8f1fb39ce9ecccbfe93a3f1344b3d0d97f20bc0196208f62b"
dependencies = [
"proc-macro2",
"syn",
]
[[package]]
name = "proc-macro2"
version = "1.0.106"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8fd00f0bb2e90d81d1044c2b32617f68fcb9fa3bb7640c23e9c748e53fb30934"
dependencies = [
"unicode-ident",
]
[[package]]
name = "quick-xml"
version = "0.37.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "331e97a1af0bf59823e6eadffe373d7b27f485be8748f71471c662c1f269b7fb"
dependencies = [
"memchr",
]
[[package]]
name = "quote"
version = "1.0.45"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "41f2619966050689382d2b44f664f4bc593e129785a36d6ee376ddf37259b924"
dependencies = [
"proc-macro2",
]
[[package]]
name = "r-efi"
version = "6.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f8dcc9c7d52a811697d2151c701e0d08956f92b0e24136cf4cf27b57a6a0d9bf"
[[package]]
name = "rand"
version = "0.8.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "34af8d1a0e25924bc5b7c43c079c942339d8f0a8b57c39049bef581b46327404"
dependencies = [
"libc",
"rand_chacha",
"rand_core",
]
[[package]]
name = "rand_chacha"
version = "0.3.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e6c10a63a0fa32252be49d21e7709d4d4baf8d231c2dbce1eaa8141b9b127d88"
dependencies = [
"ppv-lite86",
"rand_core",
]
[[package]]
name = "rand_core"
version = "0.6.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ec0be4795e2f6a28069bec0b5ff3e2ac9bafc99e6a9a7dc3547996c5c816922c"
dependencies = [
"getrandom 0.2.17",
]
[[package]]
name = "rand_distr"
version = "0.4.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "32cb0b9bc82b0a0876c2dd994a7e7a2683d3e7390ca40e6886785ef0c7e3ee31"
dependencies = [
"num-traits",
"rand",
]
[[package]]
name = "rawpointer"
version = "0.2.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "60a357793950651c4ed0f3f52338f53b2f809f32d83a07f72909fa13e4c6c1e3"
[[package]]
name = "rayon"
version = "1.11.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "368f01d005bf8fd9b1206fb6fa653e6c4a81ceb1466406b81792d87c5677a58f"
dependencies = [
"either",
"rayon-core",
]
[[package]]
name = "rayon-core"
version = "1.13.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "22e18b0f0062d30d4230b2e85ff77fdfe4326feb054b9783a3460d8435c8ab91"
dependencies = [
"crossbeam-deque",
"crossbeam-utils",
]
[[package]]
name = "regex"
version = "1.12.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e10754a14b9137dd7b1e3e5b0493cc9171fdd105e0ab477f51b72e7f3ac0e276"
dependencies = [
"aho-corasick",
"memchr",
"regex-automata",
"regex-syntax",
]
[[package]]
name = "regex-automata"
version = "0.4.14"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6e1dd4122fc1595e8162618945476892eefca7b88c52820e74af6262213cae8f"
dependencies = [
"aho-corasick",
"memchr",
"regex-syntax",
]
[[package]]
name = "regex-syntax"
version = "0.8.10"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "dc897dd8d9e8bd1ed8cdad82b5966c3e0ecae09fb1907d58efaa013543185d0a"
[[package]]
name = "rustc_version"
version = "0.1.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c5f5376ea5e30ce23c03eb77cbe4962b988deead10910c372b226388b594c084"
dependencies = [
"semver 0.1.20",
]
[[package]]
name = "rustix"
version = "1.1.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b6fe4565b9518b83ef4f91bb47ce29620ca828bd32cb7e408f0062e9930ba190"
dependencies = [
"bitflags",
"errno",
"libc",
"linux-raw-sys",
"windows-sys",
]
[[package]]
name = "rustversion"
version = "1.0.22"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b39cdef0fa800fc44525c84ccb54a029961a8215f9619753635a9c0d2538d46d"
[[package]]
name = "ryu"
version = "1.0.23"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9774ba4a74de5f7b1c1451ed6cd5285a32eddb5cccb8cc655a4e50009e06477f"
[[package]]
name = "safe_arch"
version = "0.7.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "96b02de82ddbe1b636e6170c21be622223aea188ef2e139be0a5b219ec215323"
dependencies = [
"bytemuck",
]
[[package]]
name = "semver"
version = "0.1.20"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d4f410fedcf71af0345d7607d246e7ad15faaadd49d240ee3b24e5dc21a820ac"
[[package]]
name = "semver"
version = "1.0.27"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d767eb0aabc880b29956c35734170f26ed551a859dbd361d140cdbeca61ab1e2"
[[package]]
name = "serde"
version = "1.0.228"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9a8e94ea7f378bd32cbbd37198a4a91436180c5bb472411e48b5ec2e2124ae9e"
dependencies = [
"serde_core",
"serde_derive",
]
[[package]]
name = "serde_core"
version = "1.0.228"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "41d385c7d4ca58e59fc732af25c3983b67ac852c1a25000afe1175de458b67ad"
dependencies = [
"serde_derive",
]
[[package]]
name = "serde_derive"
version = "1.0.228"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d540f220d3187173da220f885ab66608367b6574e925011a9353e4badda91d79"
dependencies = [
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "serde_json"
version = "1.0.149"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "83fc039473c5595ace860d8c4fafa220ff474b3fc6bfdb4293327f1a37e94d86"
dependencies = [
"itoa",
"memchr",
"serde",
"serde_core",
"zmij",
]
[[package]]
name = "serde_spanned"
version = "0.6.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bf41e0cfaf7226dca15e8197172c295a782857fcb97fad1808a166870dee75a3"
dependencies = [
"serde",
]
[[package]]
name = "simba"
version = "0.9.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c99284beb21666094ba2b75bbceda012e610f5479dfcc2d6e2426f53197ffd95"
dependencies = [
"approx",
"num-complex",
"num-traits",
"paste",
"wide",
]
[[package]]
name = "simd-adler32"
version = "0.3.8"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e320a6c5ad31d271ad523dcf3ad13e2767ad8b1cb8f047f75a8aeaf8da139da2"
[[package]]
name = "statrs"
version = "0.18.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2a3fe7c28c6512e766b0874335db33c94ad7b8f9054228ae1c2abd47ce7d335e"
dependencies = [
"approx",
"nalgebra",
"num-traits",
"rand",
]
[[package]]
name = "strsim"
version = "0.11.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7da8b5736845d9f2fcb837ea5d9e2628564b3b043a70948a3f0b778838c5fb4f"
[[package]]
name = "strum"
version = "0.26.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8fec0f0aef304996cf250b31b5a10dee7980c85da9d759361292b8bca5a18f06"
[[package]]
name = "strum_macros"
version = "0.26.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4c6bee85a5a24955dc440386795aa378cd9cf82acd5f764469152d2270e581be"
dependencies = [
"heck",
"proc-macro2",
"quote",
"rustversion",
"syn",
]
[[package]]
name = "syn"
version = "2.0.117"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e665b8803e7b1d2a727f4023456bbbbe74da67099c585258af0ad9c5013b9b99"
dependencies = [
"proc-macro2",
"quote",
"unicode-ident",
]
[[package]]
name = "tempfile"
version = "3.27.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "32497e9a4c7b38532efcdebeef879707aa9f794296a4f0244f6f69e9bc8574bd"
dependencies = [
"fastrand",
"getrandom 0.4.2",
"once_cell",
"rustix",
"windows-sys",
]
[[package]]
name = "termtree"
version = "0.5.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8f50febec83f5ee1df3015341d8bd429f2d1cc62bcba7ea2076759d315084683"
[[package]]
name = "thiserror"
version = "1.0.69"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b6aaf5339b578ea85b50e080feb250a3e8ae8cfcdff9a461c9ec2904bc923f52"
dependencies = [
"thiserror-impl 1.0.69",
]
[[package]]
name = "thiserror"
version = "2.0.18"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4288b5bcbc7920c07a1149a35cf9590a2aa808e0bc1eafaade0b80947865fbc4"
dependencies = [
"thiserror-impl 2.0.18",
]
[[package]]
name = "thiserror-impl"
version = "1.0.69"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4fee6c4efc90059e10f81e6d42c60a18f76588c3d74cb83a0b242a2b6c7504c1"
dependencies = [
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "thiserror-impl"
version = "2.0.18"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ebc4ee7f67670e9b64d05fa4253e753e016c6c95ff35b89b7941d6b856dec1d5"
dependencies = [
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "toml"
version = "0.8.23"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "dc1beb996b9d83529a9e75c17a1686767d148d70663143c7854d8b4a09ced362"
dependencies = [
"serde",
"serde_spanned",
"toml_datetime",
"toml_edit",
]
[[package]]
name = "toml_datetime"
version = "0.6.11"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "22cddaf88f4fbc13c51aebbf5f8eceb5c7c5a9da2ac40a13519eb5b0a0e8f11c"
dependencies = [
"serde",
]
[[package]]
name = "toml_edit"
version = "0.22.27"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "41fe8c660ae4257887cf66394862d21dbca4a6ddd26f04a3560410406a2f819a"
dependencies = [
"indexmap",
"serde",
"serde_spanned",
"toml_datetime",
"toml_write",
"winnow",
]
[[package]]
name = "toml_write"
version = "0.1.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5d99f8c9a7727884afe522e9bd5edbfc91a3312b36a77b5fb8926e4c31a41801"
[[package]]
name = "triple_accel"
version = "0.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "22048bc95dfb2ffd05b1ff9a756290a009224b60b2f0e7525faeee7603851e63"
[[package]]
name = "typenum"
version = "1.19.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "562d481066bde0658276a35467c4af00bdc6ee726305698a55b86e61d7ad82bb"
[[package]]
name = "unicode-ident"
version = "1.0.24"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e6e4313cd5fcd3dad5cafa179702e2b244f760991f45397d14d4ebf38247da75"
[[package]]
name = "unicode-xid"
version = "0.2.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ebc1c04c71510c7f702b52b7c350734c9ff1295c464a03335b00bb84fc54f853"
[[package]]
name = "utf8parse"
version = "0.2.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "06abde3611657adf66d383f00b093d7faecc7fa57071cce2578660c9f1010821"
[[package]]
name = "vec_map"
version = "0.8.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f1bddf1187be692e79c5ffeab891132dfb0f236ed36a43c7ed39f1165ee20191"
dependencies = [
"serde",
]
[[package]]
name = "wait-timeout"
version = "0.2.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "09ac3b126d3914f9849036f826e054cbabdc8519970b8998ddaf3b5bd3c65f11"
dependencies = [
"libc",
]
[[package]]
name = "wasi"
version = "0.11.1+wasi-snapshot-preview1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ccf3ec651a847eb01de73ccad15eb7d99f80485de043efb2f370cd654f4ea44b"
[[package]]
name = "wasip2"
version = "1.0.2+wasi-0.2.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9517f9239f02c069db75e65f174b3da828fe5f5b945c4dd26bd25d89c03ebcf5"
dependencies = [
"wit-bindgen",
]
[[package]]
name = "wasip3"
version = "0.4.0+wasi-0.3.0-rc-2026-01-06"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5428f8bf88ea5ddc08faddef2ac4a67e390b88186c703ce6dbd955e1c145aca5"
dependencies = [
"wit-bindgen",
]
[[package]]
name = "wasm-encoder"
version = "0.244.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "990065f2fe63003fe337b932cfb5e3b80e0b4d0f5ff650e6985b1048f62c8319"
dependencies = [
"leb128fmt",
"wasmparser",
]
[[package]]
name = "wasm-metadata"
version = "0.244.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bb0e353e6a2fbdc176932bbaab493762eb1255a7900fe0fea1a2f96c296cc909"
dependencies = [
"anyhow",
"indexmap",
"wasm-encoder",
"wasmparser",
]
[[package]]
name = "wasmparser"
version = "0.244.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "47b807c72e1bac69382b3a6fb3dbe8ea4c0ed87ff5629b8685ae6b9a611028fe"
dependencies = [
"bitflags",
"hashbrown 0.15.5",
"indexmap",
"semver 1.0.27",
]
[[package]]
name = "wide"
version = "0.7.33"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0ce5da8ecb62bcd8ec8b7ea19f69a51275e91299be594ea5cc6ef7819e16cd03"
dependencies = [
"bytemuck",
"safe_arch",
]
[[package]]
name = "windows-link"
version = "0.2.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f0805222e57f7521d6a62e36fa9163bc891acd422f971defe97d64e70d0a4fe5"
[[package]]
name = "windows-sys"
version = "0.61.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ae137229bcbd6cdf0f7b80a31df61766145077ddf49416a728b02cb3921ff3fc"
dependencies = [
"windows-link",
]
[[package]]
name = "winnow"
version = "0.7.15"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "df79d97927682d2fd8adb29682d1140b343be4ac0f08fd68b7765d9c059d3945"
dependencies = [
"memchr",
]
[[package]]
name = "wit-bindgen"
version = "0.51.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d7249219f66ced02969388cf2bb044a09756a083d0fab1e566056b04d9fbcaa5"
dependencies = [
"wit-bindgen-rust-macro",
]
[[package]]
name = "wit-bindgen-core"
version = "0.51.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ea61de684c3ea68cb082b7a88508a8b27fcc8b797d738bfc99a82facf1d752dc"
dependencies = [
"anyhow",
"heck",
"wit-parser",
]
[[package]]
name = "wit-bindgen-rust"
version = "0.51.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b7c566e0f4b284dd6561c786d9cb0142da491f46a9fbed79ea69cdad5db17f21"
dependencies = [
"anyhow",
"heck",
"indexmap",
"prettyplease",
"syn",
"wasm-metadata",
"wit-bindgen-core",
"wit-component",
]
[[package]]
name = "wit-bindgen-rust-macro"
version = "0.51.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0c0f9bfd77e6a48eccf51359e3ae77140a7f50b1e2ebfe62422d8afdaffab17a"
dependencies = [
"anyhow",
"prettyplease",
"proc-macro2",
"quote",
"syn",
"wit-bindgen-core",
"wit-bindgen-rust",
]
[[package]]
name = "wit-component"
version = "0.244.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9d66ea20e9553b30172b5e831994e35fbde2d165325bec84fc43dbf6f4eb9cb2"
dependencies = [
"anyhow",
"bitflags",
"indexmap",
"log",
"serde",
"serde_derive",
"serde_json",
"wasm-encoder",
"wasm-metadata",
"wasmparser",
"wit-parser",
]
[[package]]
name = "wit-parser"
version = "0.244.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ecc8ac4bc1dc3381b7f59c34f00b67e18f910c2c0f50015669dde7def656a736"
dependencies = [
"anyhow",
"id-arena",
"indexmap",
"log",
"semver 1.0.27",
"serde",
"serde_derive",
"serde_json",
"unicode-xid",
"wasmparser",
]
[[package]]
name = "zerocopy"
version = "0.8.42"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f2578b716f8a7a858b7f02d5bd870c14bf4ddbbcf3a4c05414ba6503640505e3"
dependencies = [
"zerocopy-derive",
]
[[package]]
name = "zerocopy-derive"
version = "0.8.42"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7e6cc098ea4d3bd6246687de65af3f920c430e236bee1e3bf2e441463f08a02f"
dependencies = [
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "zmij"
version = "1.0.21"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b8848ee67ecc8aedbaf3e4122217aff892639231befc6a1b58d29fff4c2cabaa"