gdcm_conv 0.2.0

Grassroots DICOM Library wrapper
Documentation 
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/*=========================================================================

  Program: GDCM (Grassroots DICOM). A DICOM library

  Copyright (c) 2006-2011 Mathieu Malaterre
  All rights reserved.
  See Copyright.txt or http://gdcm.sourceforge.net/Copyright.html for details.

     This software is distributed WITHOUT ANY WARRANTY; without even
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
     PURPOSE.  See the above copyright notice for more information.

=========================================================================*/

/**
 */
/*
 * Usage:
 * $ export LD_LIBRARY_PATH=$HOME/Projects/gdcm/debug-gcc/bin
 * $ mono bin/Cleaner.exe gdcmData/012345.002.050.dcm out.dcm
 */
using System;
using gdcm;

public class MyWatcher : SimpleSubjectWatcher
{
  public MyWatcher(Subject s):base(s,"Override String"){}
  protected override void StartFilter() {
    System.Console.WriteLine( "This is my start" );
  }
  protected override void EndFilter(){
    System.Console.WriteLine( "This is my end" );
  }
  protected override void ShowProgress(Subject caller, Event evt){
    ProgressEvent pe = ProgressEvent.Cast(evt);
    System.Console.WriteLine( "This is my progress: " + pe.GetProgress() );
  }
  protected override void ShowIteration(){
    System.Console.WriteLine( "This is my iteration" );
  }
  protected override void ShowAnonymization(Subject caller, Event evt){
/*
 * A couple of explanation are necessary here to understand how SWIG work
 *  http://www.swig.org/Doc1.3/Java.html#adding_downcasts
 *
 *  System.Console.WriteLine( "This is my Anonymization. Type: " + evt.GetEventName() );
 *  System.Type type = evt.GetType();
 *  System.Console.WriteLine( "This is my Anonymization. System.Type: " + type.ToString() );
 *  System.Console.WriteLine( "This is my Anonymization. CheckEvent: " + ae.CheckEvent( evt ) );
 *  System.Console.WriteLine( "This is my Anonymization. Processing Tag #" + ae.GetTag().toString() );
 */
    AnonymizeEvent ae = AnonymizeEvent.Cast(evt);
    if( ae != null )
      {
      Tag t = ae.GetTag();
      System.Console.WriteLine( "This is my Anonymization. Processing Tag #" + t.toString() );
      }
    else
      {
      System.Console.WriteLine( "This is my Anonymization. Unhandled Event type: " + evt.GetEventName() );
      }
  }
  protected override void ShowAbort(){
    System.Console.WriteLine( "This is my abort" );
  }
}

public class Cleaner
{
  public static int Main(string[] args)
    {
    gdcm.Global global = gdcm.Global.GetInstance();
    if( !global.LoadResourcesFiles() )
      {
      System.Console.WriteLine( "Could not LoadResourcesFiles" );
      return 1;
      }

    string file1 = args[0];
    string file2 = args[1];
    Reader reader = new Reader();
    reader.SetFileName( file1 );
    bool ret = reader.Read();
    if( !ret )
      {
      return 1;
      }

    SmartPtrCleaner scleaner = gdcm.Cleaner.New();
    gdcm.Cleaner cleaner = scleaner.__ref__();

    //SimpleSubjectWatcher watcher = new SimpleSubjectWatcher(cleaner, "Anonymizer");
    MyWatcher watcher = new MyWatcher(cleaner);

    cleaner.SetFile( reader.GetFile() );
    cleaner.Empty( new gdcm.VR(gdcm.VR.VRType.PN) );
    gdcm.DPath dpath = new gdcm.DPath();
    dpath.ConstructFromString( "/0010,0010" );
    cleaner.Preserve( dpath );
    gdcm.Tag t1 = new gdcm.Tag(0x10, 0x30);
    cleaner.Empty( t1 );
    gdcm.PrivateTag pt0 = new gdcm.PrivateTag( new gdcm.Tag(0x29,0x60), "SIEMENS MEDCOM HEADER2" );
    cleaner.Remove( pt0 );
    gdcm.PrivateTag pt1 = new gdcm.PrivateTag( new gdcm.Tag(0x29,0x10), "SIEMENS CSA HEADER" );
    gdcm.PrivateTag pt2 = new gdcm.PrivateTag( new gdcm.Tag(0x29,0x20), "SIEMENS CSA HEADER" );
    cleaner.Scrub( pt1 );
    cleaner.Scrub( pt2 );
    if( !cleaner.Clean() )
      {
      return 1;
      }

    Writer writer = new Writer();
    writer.SetFileName( file2 );
    writer.SetFile( cleaner.GetFile() );
    ret = writer.Write();
    if( !ret )
      {
      return 1;
      }

    return 0;
    }
}