gapsmith-find 0.1.0

Pathway/reaction finder for gapsmith: selects pathways, orchestrates alignment, classifies hits, scores completeness.
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85

# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
rust-version = "1.80"
name = "gapsmith-find"
version = "0.1.0"
authors = ["Robert Hoehndorf <robert.hoehndorf@kaust.edu.sa>"]
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Pathway/reaction finder for gapsmith: selects pathways, orchestrates alignment, classifies hits, scores completeness."
homepage = "https://bio-ontology-research-group.github.io/gapsmith/"
readme = "README.md"
keywords = [
    "bioinformatics",
    "genomics",
    "metabolism",
    "metabolic-network",
    "fba",
]
categories = [
    "science",
    "command-line-utilities",
]
license = "GPL-3.0-or-later"
repository = "https://github.com/bio-ontology-research-group/gapsmith"

[lib]
name = "gapsmith_find"
path = "src/lib.rs"

[[test]]
name = "complex_parity"
path = "tests/complex_parity.rs"

[[test]]
name = "pipeline_parity"
path = "tests/pipeline_parity.rs"

[dependencies.gapsmith-align]
version = "0.1.0"

[dependencies.gapsmith-core]
version = "0.1.0"

[dependencies.gapsmith-db]
version = "0.1.0"

[dependencies.md-5]
version = "0.10"

[dependencies.regex]
version = "1"

[dependencies.serde]
version = "1"
features = [
    "derive",
    "rc",
]

[dependencies.tempfile]
version = "3"

[dependencies.thiserror]
version = "2"

[dependencies.tracing]
version = "0.1"

[dev-dependencies.flate2]
version = "1"