Split modes
--chunks N: write N records per output file.--files K: write exactly K output files with records as evenly distributed as possible.--headers: FASTA-only mode, one output file per FASTA header using sanitized FASTA IDs as filenames.
--chunks, --files, and --headers are mutually exclusive.
Install
cargo install fxsplit
Usage
fxsplit --help
fxsplit --file input.fasta --chunks 1000 --outdir chunks
fxsplit --file input.fastq.gz --files 8 --outdir parts
fxsplit --file input.fasta.gz --headers --outdir by_header
Docker
Build:
docker build -t fxsplit:local .
Run:
docker run --rm fxsplit:local fxsplit --help
docker run --rm -v "$PWD:/data" fxsplit:local fxsplit --file /data/input.fasta --chunks 1000 --outdir /data/out
Pull:
docker pull alejandrogzi/fxsplit:latest
