fqgrep 1.1.1

Search a pair of fastq files for reads that match a given ref or alt sequence
Documentation 
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[[bin]]
name = "fqgrep"
path = "src/main.rs"

[build-dependencies.built]
features = ["git2"]
version = "0.5.2"

[dependencies.ansi_term]
version = "0.12.1"

[dependencies.anyhow]
version = "1.0.97"

[dependencies.bitvec]
version = "1.0.1"

[dependencies.bstr]
version = "0.2.17"

[dependencies.clap]
features = ["derive", "unstable-markdown"]
version = "4.5.31"

[dependencies.csv]
version = "^1, <1.2"

[dependencies.env_logger]
version = "0.9.3"

[dependencies.flate2]
default-features = false
features = ["zlib-ng"]
version = "1.1.0"

[dependencies.gzp]
version = "1.0.1"

[dependencies.isatty]
version = "0.1.9"

[dependencies.itertools]
version = "0.10.5"

[dependencies.libz-ng-sys]
version = "1.1.21"

[dependencies.log]
version = "0.4.26"

[dependencies.mimalloc]
default-features = false
version = "0.1.43"

[dependencies.num_cpus]
version = "1.16.0"

[dependencies.parking_lot]
version = "0.11.2"

[dependencies.proglog]
features = ["pretty_counts"]
version = "0.3.0"

[dependencies.regex]
default-features = false
features = ["perf", "perf-onepass", "perf-inline", "perf-literal"]
version = "1.11.1"

[dependencies.seq_io]
version = "0.3.4"

[dependencies.serde]
features = ["derive"]
version = "1.0.218"

[dev-dependencies.fgoxide]
version = "0.5.0"

[dev-dependencies.rstest]
version = "0.12.0"

[dev-dependencies.seq_io]
version = "0.3.4"

[dev-dependencies.tempfile]
version = "3"

[lib]
name = "fqgrep_lib"
path = "src/lib/mod.rs"

[package]
authors = ["Nils Homer <nils@fulcrumgenomics.com>", "Seth Stadick <seth@fulcrumgenomics.com>"]
autobenches = false
autobins = false
autoexamples = false
autolib = false
autotests = false
build = "build.rs"
categories = ["science"]
description = "Search a pair of fastq files for reads that match a given ref or alt sequence"
documentation = "https://docs.rs/fqgrep"
edition = "2024"
homepage = "https://github.com/fulcrumgenomics/fqgrep"
keywords = ["bioinformatics", "fastq"]
license = "MIT"
name = "fqgrep"
readme = "README.md"
repository = "https://github.com/fulcrumgenomics/fqgrep"
version = "1.1.1"

[profile.release]
lto = true