flow-pacmap 0.1.2

PaCMAP dimensionality reduction (Wang et al. 2021) for large-n flow cytometry — faer PCA, optional HNSW and k-d tree KNN
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65

   Compiling flow-pacmap v0.1.1 (/Users/kfls271/Rust/flow-crates/flow-pacmap)
    Finished `bench` profile [optimized] target(s) in 2.31s
     Running benches/pacmap_optimize_gpu.rs (/var/folders/44/mj5sgh7n5h146_61ng7w39q00000gp/T/cursor-sandbox-cache/d60646c2271ca88daee427ff0e77718c/cargo-target/release/deps/pacmap_optimize_gpu-e5de30282fbf1812)
Gnuplot not found, using plotters backend
Benchmarking pacmap_optimize_cpu_vs_gpu/cpu/n10000_d10
Benchmarking pacmap_optimize_cpu_vs_gpu/cpu/n10000_d10: Warming up for 1.0000 s

Warning: Unable to complete 10 samples in 30.0s. You may wish to increase target time to 35.1s or enable flat sampling.
Benchmarking pacmap_optimize_cpu_vs_gpu/cpu/n10000_d10: Collecting 10 samples in estimated 35.100 s (55 iterations)
Benchmarking pacmap_optimize_cpu_vs_gpu/cpu/n10000_d10: Analyzing
pacmap_optimize_cpu_vs_gpu/cpu/n10000_d10
                        time:   [633.06 ms 637.42 ms 645.48 ms]
                        thrpt:  [15.492 Kelem/s 15.688 Kelem/s 15.796 Kelem/s]
                 change:
                        time:   [+23.091% +27.223% +31.448%] (p = 0.00 < 0.05)
                        thrpt:  [−23.925% −21.398% −18.759%]
                        Performance has regressed.
Found 1 outliers among 10 measurements (10.00%)
  1 (10.00%) high severe
Benchmarking pacmap_optimize_cpu_vs_gpu/gpu/n10000_d10
Benchmarking pacmap_optimize_cpu_vs_gpu/gpu/n10000_d10: Warming up for 1.0000 s
Benchmarking pacmap_optimize_cpu_vs_gpu/gpu/n10000_d10: Collecting 10 samples in estimated 35.190 s (20 iterations)
Benchmarking pacmap_optimize_cpu_vs_gpu/gpu/n10000_d10: Analyzing
pacmap_optimize_cpu_vs_gpu/gpu/n10000_d10
                        time:   [1.6349 s 1.6400 s 1.6449 s]
                        thrpt:  [6.0795 Kelem/s 6.0976 Kelem/s 6.1166 Kelem/s]
Benchmarking pacmap_optimize_cpu_vs_gpu/cpu/n50000_d10
Benchmarking pacmap_optimize_cpu_vs_gpu/cpu/n50000_d10: Warming up for 1.0000 s
Benchmarking pacmap_optimize_cpu_vs_gpu/cpu/n50000_d10: Collecting 10 samples in estimated 30.178 s (20 iterations)
Benchmarking pacmap_optimize_cpu_vs_gpu/cpu/n50000_d10: Analyzing
pacmap_optimize_cpu_vs_gpu/cpu/n50000_d10
                        time:   [1.4422 s 1.4579 s 1.4755 s]
                        thrpt:  [33.887 Kelem/s 34.296 Kelem/s 34.670 Kelem/s]
                 change:
                        time:   [+19.563% +33.071% +48.339%] (p = 0.00 < 0.05)
                        thrpt:  [−32.587% −24.852% −16.362%]
                        Performance has regressed.
Found 1 outliers among 10 measurements (10.00%)
  1 (10.00%) high mild
Benchmarking pacmap_optimize_cpu_vs_gpu/gpu/n50000_d10
Benchmarking pacmap_optimize_cpu_vs_gpu/gpu/n50000_d10: Warming up for 1.0000 s
Benchmarking pacmap_optimize_cpu_vs_gpu/gpu/n50000_d10: Collecting 10 samples in estimated 36.813 s (20 iterations)
Benchmarking pacmap_optimize_cpu_vs_gpu/gpu/n50000_d10: Analyzing
pacmap_optimize_cpu_vs_gpu/gpu/n50000_d10
                        time:   [1.8035 s 1.8146 s 1.8281 s]
                        thrpt:  [27.351 Kelem/s 27.554 Kelem/s 27.723 Kelem/s]
Found 2 outliers among 10 measurements (20.00%)
  1 (10.00%) high mild
  1 (10.00%) high severe
Benchmarking pacmap_optimize_cpu_vs_gpu/cpu/n100000_d15
Benchmarking pacmap_optimize_cpu_vs_gpu/cpu/n100000_d15: Warming up for 1.0000 s
Benchmarking pacmap_optimize_cpu_vs_gpu/cpu/n100000_d15: Collecting 10 samples in estimated 45.276 s (20 iterations)
Benchmarking pacmap_optimize_cpu_vs_gpu/cpu/n100000_d15: Analyzing
pacmap_optimize_cpu_vs_gpu/cpu/n100000_d15
                        time:   [2.1835 s 2.2098 s 2.2405 s]
                        thrpt:  [44.633 Kelem/s 45.253 Kelem/s 45.798 Kelem/s]
Benchmarking pacmap_optimize_cpu_vs_gpu/gpu/n100000_d15
Benchmarking pacmap_optimize_cpu_vs_gpu/gpu/n100000_d15: Warming up for 1.0000 s
Benchmarking pacmap_optimize_cpu_vs_gpu/gpu/n100000_d15: Collecting 10 samples in estimated 42.863 s (20 iterations)
Benchmarking pacmap_optimize_cpu_vs_gpu/gpu/n100000_d15: Analyzing
pacmap_optimize_cpu_vs_gpu/gpu/n100000_d15
                        time:   [2.1784 s 2.2357 s 2.2998 s]
                        thrpt:  [43.481 Kelem/s 44.728 Kelem/s 45.905 Kelem/s]

PACMAP_EXIT:0