flow-clustering 0.1.2

Clustering algorithms for flow cytometry: K-means, DBSCAN, GMM
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82

# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2024"
name = "flow-clustering"
version = "0.1.2"
authors = ["James Moynihan"]
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Clustering algorithms for flow cytometry: K-means, DBSCAN, GMM"
readme = "README.md"
keywords = [
    "flow-cytometry",
    "clustering",
    "kmeans",
    "dbscan",
    "gmm",
]
categories = [
    "science",
    "algorithms",
]
license = "MIT"
repository = "https://github.com/jrmoynihan/flow/flow-clustering"

[package.metadata.scripts]
dry-release = "cargo smart-release flow-clustering --update-crates-index"
publish = "cargo smart-release flow-clustering --update-crates-index --execute"
changelog = "cargo changelog flow-clustering --write"

[features]
dbscan = []
default = [
    "kmeans",
    "dbscan",
    "gmm",
]
gmm = []
kmeans = []

[lib]
name = "flow_clustering"
path = "src/lib.rs"

[dependencies.anyhow]
version = "1.0.102"

[dependencies.linfa]
version = "0.8"

[dependencies.linfa-clustering]
version = "0.8"

[dependencies.linfa-linalg]
version = "0.2"

[dependencies.ndarray]
version = "0.16.1"
features = [
    "matrixmultiply-threading",
    "rayon",
    "serde",
]

[dependencies.rayon]
version = "1.11"

[dependencies.thiserror]
version = "2.0.19"