finch_cli 0.5.0

An implementation of min-wise independent permutation locality sensitive hashing ('MinHashing') for genomic data and command-line utility for manipulation.
1
2
3
4
5
6
>id1
AAGGCCTAACTTAATAGGCCCGTATAAATTAGAGCTAGCTAGCTAGTCGATCGATGCTAGCTACGTAACGTCGCGATCGATTATATTCCTCGGCGCGATATTCGCTAGCTAGCTAGCTAGTCATCGATGCATG
>id2
AAGGCCTAACTTAATAGGCCCGTATAAATTAGAAGTAGATGATAGATGTGTAGTAGTAGACCGGCTCAGCATCTGAGTCATGCTAGTCGATCGATCGTAGCTAGCGATGCTAGCTAGCTAGCTGTAGCTGCAT
>id3
GATGCTGCATGCTACAGCGATGCTAGCTGATGCTAGCTACATTACGAGGCGGCATCTATCAGTCGATCGATCGTAGCTGATCGATCGATGCTGATCGATGCTACATGCTCAGTCGATGCTAGCATGTCAGTCG