fibertools-rs 0.2.2

Fiber-seq toolkit in rust
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105

[[bin]]
name = "ft"
path = "src/main.rs"
[dependencies.anstyle]
version = "1.0.0"

[dependencies.anyhow]
version = "1.0.58"

[dependencies.bio]
version = "1.2.0"

[dependencies.clap]
features = ["cargo", "wrap_help", "color", "unstable-styles", "derive"]
version = "4.3.4"

[dependencies.clap_complete]
version = "4.0.6"

[dependencies.clap_mangen]
version = "0.2.5"

[dependencies.colored]
version = "2.0.0"

[dependencies.console]
version = "0.15"

[dependencies.env_logger]
version = "0.9.0"

[dependencies.gbdt]
version = "0.1.1"

[dependencies.indicatif]
features = ["rayon"]
version = "0.17.0"

[dependencies.itertools]
version = "0.10.5"

[dependencies.lazy_static]
version = "1.4.0"

[dependencies.log]
version = "0.4"

[dependencies.ordered-float]
version = "3.4.0"

[dependencies.rayon]
version = "1.5"

[dependencies.regex]
version = "1.5.4"

[dependencies.rust-htslib]
version = "0.43.1"

[dependencies.serde]
features = ["derive"]
version = "1.0.104"

[dependencies.serde_json]
version = "1.0.48"

[dependencies.spin]
version = "0.9.4"

[dependencies.tch]
optional = true
version = "0.13.0"

[dependencies.tempfile]
version = "3.3.0"
[dev-dependencies.assert_cmd]
version = "2.0.11"

[dev-dependencies.predicates]
version = "3.0.3"

[features]
default = ["predict"]
predict = ["dep:tch"]

[package]
authors = ["Mitchell R. Vollger <mrvollger@gmail.com>"]
build = "build.rs"
categories = ["command-line-utilities"]
description = "Fiber-seq toolkit in rust"
edition = "2021"
homepage = "https://fiberseq.github.io/fibertools-rs/"
keywords = ["cli", "bam", "bfx"]
license = "MIT"
name = "fibertools-rs"
readme = "README.md"
repository = "https://github.com/fiberseq/fibertools-rs"
version = "0.2.2"
[profile.dev]
opt-level = 2

[profile.dist]
debug = true
inherits = "release"
split-debuginfo = "packed"