fibertools-rs 0.12.0

Fiber-seq toolkit in rust
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# Build and publish the molecular-annotation Python bindings (pyMA) to PyPI.
#
# Triggered by a tag like `molecular-annotation-py-v0.1.0` (distinct from the
# Rust crate's `molecular-annotation-v*` tag). pyMA is a compiled maturin
# package, so it needs a per-platform wheel matrix. Bump the version in
# molecular-annotation/python/pyproject.toml + Cargo.toml, then push the tag.
name: release pyMA
on:
  push:
    tags: ["molecular-annotation-py-v*"]
  workflow_dispatch:

permissions:
  contents: read

defaults:
  run:
    working-directory: molecular-annotation/python

jobs:
  wheels:
    strategy:
      fail-fast: false
      matrix:
        include:
          - { os: ubuntu-latest, target: x86_64 }
          - { os: ubuntu-latest, target: aarch64 }
          - { os: macos-latest, target: x86_64 }
          - { os: macos-latest, target: aarch64 }
    runs-on: ${{ matrix.os }}
    steps:
      - uses: actions/checkout@v4
      - uses: PyO3/maturin-action@v1
        with:
          working-directory: molecular-annotation/python
          target: ${{ matrix.target }}
          args: --release --out dist --find-interpreter
          manylinux: auto
          sccache: "true"
      - uses: actions/upload-artifact@v4
        with:
          name: wheels-${{ matrix.os }}-${{ matrix.target }}
          path: molecular-annotation/python/dist

  sdist:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
      - uses: PyO3/maturin-action@v1
        with:
          working-directory: molecular-annotation/python
          command: sdist
          args: --out dist
      - uses: actions/upload-artifact@v4
        with:
          name: sdist
          path: molecular-annotation/python/dist

  publish:
    needs: [wheels, sdist]
    runs-on: ubuntu-latest
    if: startsWith(github.ref, 'refs/tags/')
    # PyPI trusted publishing (OIDC) -- no API token. Requires a matching
    # trusted publisher on PyPI for project `molecular-annotation`
    # (owner/repo fiberseq/fibertools-rs, workflow release-python-ma.yml, no
    # environment).
    permissions:
      id-token: write
    steps:
      - uses: actions/download-artifact@v4
        with:
          path: dist
          merge-multiple: true
      - name: Publish to PyPI (trusted publishing)
        uses: pypa/gh-action-pypi-publish@release/v1
        with:
          skip-existing: true