version = 3
[[package]]
name = "addr2line"
version = "0.17.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b9ecd88a8c8378ca913a680cd98f0f13ac67383d35993f86c90a70e3f137816b"
dependencies = [
"gimli",
]
[[package]]
name = "adler"
version = "1.0.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f26201604c87b1e01bd3d98f8d5d9a8fcbb815e8cedb41ffccbeb4bf593a35fe"
[[package]]
name = "aes"
version = "0.7.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9e8b47f52ea9bae42228d07ec09eb676433d7c4ed1ebdf0f1d1c29ed446f1ab8"
dependencies = [
"cfg-if 1.0.0",
"cipher",
"cpufeatures",
"opaque-debug",
]
[[package]]
name = "aho-corasick"
version = "0.7.19"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b4f55bd91a0978cbfd91c457a164bab8b4001c833b7f323132c0a4e1922dd44e"
dependencies = [
"memchr",
]
[[package]]
name = "anyhow"
version = "1.0.65"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "98161a4e3e2184da77bb14f02184cdd111e83bbbcc9979dfee3c44b9a85f5602"
[[package]]
name = "approx"
version = "0.5.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "cab112f0a86d568ea0e627cc1d6be74a1e9cd55214684db5561995f6dad897c6"
dependencies = [
"num-traits",
]
[[package]]
name = "atty"
version = "0.2.14"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d9b39be18770d11421cdb1b9947a45dd3f37e93092cbf377614828a319d5fee8"
dependencies = [
"hermit-abi",
"libc",
"winapi",
]
[[package]]
name = "autocfg"
version = "0.1.8"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0dde43e75fd43e8a1bf86103336bc699aa8d17ad1be60c76c0bdfd4828e19b78"
dependencies = [
"autocfg 1.1.0",
]
[[package]]
name = "autocfg"
version = "1.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d468802bab17cbc0cc575e9b053f41e72aa36bfa6b7f55e3529ffa43161b97fa"
[[package]]
name = "backtrace"
version = "0.3.66"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "cab84319d616cfb654d03394f38ab7e6f0919e181b1b57e1fd15e7fb4077d9a7"
dependencies = [
"addr2line",
"cc",
"cfg-if 1.0.0",
"libc",
"miniz_oxide",
"object",
"rustc-demangle",
]
[[package]]
name = "base64ct"
version = "1.5.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b645a089122eccb6111b4f81cbc1a49f5900ac4666bb93ac027feaecf15607bf"
[[package]]
name = "bio"
version = "0.41.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4a69423e30444738eccc5e54eccee75779dd3f15ecc0469b95d8529d4b6b7586"
dependencies = [
"anyhow",
"approx",
"bio-types 0.13.0",
"bit-set",
"bv",
"bytecount",
"csv",
"custom_derive",
"enum-map",
"fxhash",
"getset",
"itertools",
"itertools-num",
"lazy_static",
"multimap",
"ndarray",
"newtype_derive",
"num-integer",
"num-traits",
"ordered-float 1.1.1",
"petgraph",
"rand 0.8.5",
"regex",
"serde",
"serde_derive",
"statrs",
"strum",
"strum_macros 0.23.1",
"thiserror",
"triple_accel",
"vec_map",
]
[[package]]
name = "bio-types"
version = "0.12.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "13bc4296477f37f54e4fd21efaf48a7fa40fbb289bfbf338af5fbbe42797acb6"
dependencies = [
"derive-new",
"lazy_static",
"regex",
"strum_macros 0.23.1",
"thiserror",
]
[[package]]
name = "bio-types"
version = "0.13.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "dfa990f40a28735fa598dc3dd58d73e62e6b41458959d623903b927ba7b04c80"
dependencies = [
"derive-new",
"lazy_static",
"regex",
"strum_macros 0.24.3",
"thiserror",
]
[[package]]
name = "bit-set"
version = "0.5.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0700ddab506f33b20a03b13996eccd309a48e5ff77d0d95926aa0210fb4e95f1"
dependencies = [
"bit-vec",
]
[[package]]
name = "bit-vec"
version = "0.6.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "349f9b6a179ed607305526ca489b34ad0a41aed5f7980fa90eb03160b69598fb"
[[package]]
name = "bitflags"
version = "1.3.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bef38d45163c2f1dde094a7dfd33ccf595c92905c8f8f4fdc18d06fb1037718a"
[[package]]
name = "block-buffer"
version = "0.10.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "69cce20737498f97b993470a6e536b8523f0af7892a4f928cceb1ac5e52ebe7e"
dependencies = [
"generic-array",
]
[[package]]
name = "bstr"
version = "0.2.17"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ba3569f383e8f1598449f1a423e72e99569137b47740b1da11ef19af3d5c3223"
dependencies = [
"lazy_static",
"memchr",
"regex-automata",
"serde",
]
[[package]]
name = "bv"
version = "0.11.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8834bb1d8ee5dc048ee3124f2c7c1afcc6bc9aed03f11e9dfd8c69470a5db340"
dependencies = [
"feature-probe",
"serde",
]
[[package]]
name = "bytecount"
version = "0.6.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2c676a478f63e9fa2dd5368a42f28bba0d6c560b775f38583c8bbaa7fcd67c9c"
[[package]]
name = "byteorder"
version = "1.4.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "14c189c53d098945499cdfa7ecc63567cf3886b3332b312a5b4585d8d3a6a610"
[[package]]
name = "bzip2"
version = "0.4.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6afcd980b5f3a45017c57e57a2fcccbb351cc43a356ce117ef760ef8052b89b0"
dependencies = [
"bzip2-sys",
"libc",
]
[[package]]
name = "bzip2-sys"
version = "0.1.11+1.0.8"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "736a955f3fa7875102d57c82b8cac37ec45224a07fd32d58f9f7a186b6cd4cdc"
dependencies = [
"cc",
"libc",
"pkg-config",
]
[[package]]
name = "cc"
version = "1.0.73"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2fff2a6927b3bb87f9595d67196a70493f627687a71d87a0d692242c33f58c11"
dependencies = [
"jobserver",
]
[[package]]
name = "cfg-if"
version = "0.1.10"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4785bdd1c96b2a846b2bd7cc02e86b6b3dbf14e7e53446c4f54c92a361040822"
[[package]]
name = "cfg-if"
version = "1.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd"
[[package]]
name = "cipher"
version = "0.3.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7ee52072ec15386f770805afd189a01c8841be8696bed250fa2f13c4c0d6dfb7"
dependencies = [
"generic-array",
]
[[package]]
name = "clap"
version = "4.0.26"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2148adefda54e14492fb9bddcc600b4344c5d1a3123bd666dcb939c6f0e0e57e"
dependencies = [
"atty",
"bitflags",
"clap_derive",
"clap_lex",
"once_cell",
"strsim",
"termcolor",
]
[[package]]
name = "clap_complete"
version = "4.0.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "10861370d2ba66b0f5989f83ebf35db6421713fd92351790e7fdd6c36774c56b"
dependencies = [
"clap",
]
[[package]]
name = "clap_derive"
version = "4.0.21"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0177313f9f02afc995627906bbd8967e2be069f5261954222dac78290c2b9014"
dependencies = [
"heck 0.4.0",
"proc-macro-error",
"proc-macro2 1.0.47",
"quote 1.0.21",
"syn 1.0.102",
]
[[package]]
name = "clap_lex"
version = "0.3.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0d4198f73e42b4936b35b5bb248d81d2b595ecb170da0bac7655c54eedfa8da8"
dependencies = [
"os_str_bytes",
]
[[package]]
name = "clap_mangen"
version = "0.2.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "904eb24d05ad587557e0f484ddce5c737c30cf81372badb16d13e41c4b8340b1"
dependencies = [
"clap",
"roff",
]
[[package]]
name = "cloudabi"
version = "0.0.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ddfc5b9aa5d4507acaf872de71051dfd0e309860e88966e1051e462a077aac4f"
dependencies = [
"bitflags",
]
[[package]]
name = "cmake"
version = "0.1.48"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e8ad8cef104ac57b68b89df3208164d228503abbdce70f6880ffa3d970e7443a"
dependencies = [
"cc",
]
[[package]]
name = "colored"
version = "2.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b3616f750b84d8f0de8a58bda93e08e2a81ad3f523089b05f1dffecab48c6cbd"
dependencies = [
"atty",
"lazy_static",
"winapi",
]
[[package]]
name = "console"
version = "0.15.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c050367d967ced717c04b65d8c619d863ef9292ce0c5760028655a2fb298718c"
dependencies = [
"encode_unicode",
"lazy_static",
"libc",
"terminal_size",
"unicode-width",
"winapi",
]
[[package]]
name = "constant_time_eq"
version = "0.1.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "245097e9a4535ee1e3e3931fcfcd55a796a44c643e8596ff6566d68f09b87bbc"
[[package]]
name = "cpufeatures"
version = "0.2.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "28d997bd5e24a5928dd43e46dc529867e207907fe0b239c3477d924f7f2ca320"
dependencies = [
"libc",
]
[[package]]
name = "crc32fast"
version = "1.3.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b540bd8bc810d3885c6ea91e2018302f68baba2129ab3e88f32389ee9370880d"
dependencies = [
"cfg-if 1.0.0",
]
[[package]]
name = "crossbeam-channel"
version = "0.5.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c2dd04ddaf88237dc3b8d8f9a3c1004b506b54b3313403944054d23c0870c521"
dependencies = [
"cfg-if 1.0.0",
"crossbeam-utils",
]
[[package]]
name = "crossbeam-deque"
version = "0.8.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "715e8152b692bba2d374b53d4875445368fdf21a94751410af607a5ac677d1fc"
dependencies = [
"cfg-if 1.0.0",
"crossbeam-epoch",
"crossbeam-utils",
]
[[package]]
name = "crossbeam-epoch"
version = "0.9.11"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f916dfc5d356b0ed9dae65f1db9fc9770aa2851d2662b988ccf4fe3516e86348"
dependencies = [
"autocfg 1.1.0",
"cfg-if 1.0.0",
"crossbeam-utils",
"memoffset",
"scopeguard",
]
[[package]]
name = "crossbeam-utils"
version = "0.8.12"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "edbafec5fa1f196ca66527c1b12c2ec4745ca14b50f1ad8f9f6f720b55d11fac"
dependencies = [
"cfg-if 1.0.0",
]
[[package]]
name = "crypto-common"
version = "0.1.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1bfb12502f3fc46cca1bb51ac28df9d618d813cdc3d2f25b9fe775a34af26bb3"
dependencies = [
"generic-array",
"typenum",
]
[[package]]
name = "csv"
version = "1.1.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "22813a6dc45b335f9bade10bf7271dc477e81113e89eb251a0bc2a8a81c536e1"
dependencies = [
"bstr",
"csv-core",
"itoa 0.4.8",
"ryu",
"serde",
]
[[package]]
name = "csv-core"
version = "0.1.10"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2b2466559f260f48ad25fe6317b3c8dac77b5bdb5763ac7d9d6103530663bc90"
dependencies = [
"memchr",
]
[[package]]
name = "curl"
version = "0.4.44"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "509bd11746c7ac09ebd19f0b17782eae80aadee26237658a6b4808afb5c11a22"
dependencies = [
"curl-sys",
"libc",
"openssl-probe",
"openssl-sys",
"schannel",
"socket2",
"winapi",
]
[[package]]
name = "curl-sys"
version = "0.4.56+curl-7.83.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6093e169dd4de29e468fa649fbae11cdcd5551c81fe5bf1b0677adad7ef3d26f"
dependencies = [
"cc",
"libc",
"libz-sys",
"openssl-sys",
"pkg-config",
"vcpkg",
"winapi",
]
[[package]]
name = "custom_derive"
version = "0.1.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ef8ae57c4978a2acd8b869ce6b9ca1dfe817bff704c220209fdef2c0b75a01b9"
[[package]]
name = "derive-new"
version = "0.5.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3418329ca0ad70234b9735dc4ceed10af4df60eff9c8e7b06cb5e520d92c3535"
dependencies = [
"proc-macro2 1.0.47",
"quote 1.0.21",
"syn 1.0.102",
]
[[package]]
name = "digest"
version = "0.10.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "adfbc57365a37acbd2ebf2b64d7e69bb766e2fea813521ed536f5d0520dcf86c"
dependencies = [
"block-buffer",
"crypto-common",
"subtle",
]
[[package]]
name = "either"
version = "1.8.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "90e5c1c8368803113bf0c9584fc495a58b86dc8a29edbf8fe877d21d9507e797"
[[package]]
name = "encode_unicode"
version = "0.3.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a357d28ed41a50f9c765dbfe56cbc04a64e53e5fc58ba79fbc34c10ef3df831f"
[[package]]
name = "enum-map"
version = "1.1.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e893a7ba6116821058dec84a6fb14fb2a97cd8ce5fd0f85d5a4e760ecd7329d9"
dependencies = [
"enum-map-derive",
]
[[package]]
name = "enum-map-derive"
version = "0.6.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "84278eae0af6e34ff6c1db44c11634a694aafac559ff3080e4db4e4ac35907aa"
dependencies = [
"proc-macro2 1.0.47",
"quote 1.0.21",
"syn 1.0.102",
]
[[package]]
name = "env_logger"
version = "0.9.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c90bf5f19754d10198ccb95b70664fc925bd1fc090a0fd9a6ebc54acc8cd6272"
dependencies = [
"atty",
"humantime",
"log",
"regex",
"termcolor",
]
[[package]]
name = "failure"
version = "0.1.8"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d32e9bd16cc02eae7db7ef620b392808b89f6a5e16bb3497d159c6b92a0f4f86"
dependencies = [
"backtrace",
"failure_derive",
]
[[package]]
name = "failure_derive"
version = "0.1.8"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "aa4da3c766cd7a0db8242e326e9e4e081edd567072893ed320008189715366a4"
dependencies = [
"proc-macro2 1.0.47",
"quote 1.0.21",
"syn 1.0.102",
"synstructure",
]
[[package]]
name = "fastrand"
version = "1.8.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a7a407cfaa3385c4ae6b23e84623d48c2798d06e3e6a1878f7f59f17b3f86499"
dependencies = [
"instant",
]
[[package]]
name = "feature-probe"
version = "0.1.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "835a3dc7d1ec9e75e2b5fb4ba75396837112d2060b03f7d43bc1897c7f7211da"
[[package]]
name = "fibertools-rs"
version = "0.1.0"
dependencies = [
"anyhow",
"bio",
"bio-types 0.12.1",
"clap",
"clap_complete",
"clap_mangen",
"colored",
"console",
"env_logger",
"failure",
"gbdt",
"git2",
"indicatif",
"itertools",
"lazy_static",
"log",
"ordered-float 3.4.0",
"quote 0.6.13",
"rayon",
"regex",
"rust-htslib",
"serde",
"serde_json",
"spin",
"syn 0.15.44",
"tch",
"tempfile",
]
[[package]]
name = "fixedbitset"
version = "0.4.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0ce7134b9999ecaf8bcd65542e436736ef32ddca1b3e06094cb6ec5755203b80"
[[package]]
name = "flate2"
version = "1.0.24"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f82b0f4c27ad9f8bfd1f3208d882da2b09c301bc1c828fd3a00d0216d2fbbff6"
dependencies = [
"crc32fast",
"miniz_oxide",
]
[[package]]
name = "form_urlencoded"
version = "1.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a9c384f161156f5260c24a097c56119f9be8c798586aecc13afbcbe7b7e26bf8"
dependencies = [
"percent-encoding",
]
[[package]]
name = "fs-utils"
version = "1.1.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6fc7a9dc005c944c98a935e7fd626faf5bf7e5a609f94bc13e42fc4a02e52593"
dependencies = [
"quick-error",
]
[[package]]
name = "fuchsia-cprng"
version = "0.1.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a06f77d526c1a601b7c4cdd98f54b5eaabffc14d5f2f0296febdc7f357c6d3ba"
[[package]]
name = "fxhash"
version = "0.2.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c31b6d751ae2c7f11320402d34e41349dd1016f8d5d45e48c4312bc8625af50c"
dependencies = [
"byteorder",
]
[[package]]
name = "gbdt"
version = "0.1.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "74248386ea349f903cee13fae53f41bdae987f74eb798c6cbcb08370c99ccd34"
dependencies = [
"cfg-if 0.1.10",
"rand 0.6.5",
"regex",
"serde",
"serde_derive",
"serde_json",
]
[[package]]
name = "generic-array"
version = "0.14.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bff49e947297f3312447abdca79f45f4738097cc82b06e72054d2223f601f1b9"
dependencies = [
"typenum",
"version_check",
]
[[package]]
name = "getrandom"
version = "0.2.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4eb1a864a501629691edf6c15a593b7a51eebaa1e8468e9ddc623de7c9b58ec6"
dependencies = [
"cfg-if 1.0.0",
"libc",
"wasi",
]
[[package]]
name = "getset"
version = "0.1.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e45727250e75cc04ff2846a66397da8ef2b3db8e40e0cef4df67950a07621eb9"
dependencies = [
"proc-macro-error",
"proc-macro2 1.0.47",
"quote 1.0.21",
"syn 1.0.102",
]
[[package]]
name = "gimli"
version = "0.26.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "22030e2c5a68ec659fde1e949a745124b48e6fa8b045b7ed5bd1fe4ccc5c4e5d"
[[package]]
name = "git2"
version = "0.15.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2994bee4a3a6a51eb90c218523be382fd7ea09b16380b9312e9dbe955ff7c7d1"
dependencies = [
"bitflags",
"libc",
"libgit2-sys",
"log",
"openssl-probe",
"openssl-sys",
"url",
]
[[package]]
name = "glob"
version = "0.3.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9b919933a397b79c37e33b77bb2aa3dc8eb6e165ad809e58ff75bc7db2e34574"
[[package]]
name = "half"
version = "1.8.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "eabb4a44450da02c90444cf74558da904edde8fb4e9035a9a6a4e15445af0bd7"
[[package]]
name = "hashbrown"
version = "0.12.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8a9ee70c43aaf417c914396645a0fa852624801b24ebb7ae78fe8272889ac888"
[[package]]
name = "heck"
version = "0.3.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6d621efb26863f0e9924c6ac577e8275e5e6b77455db64ffa6c65c904e9e132c"
dependencies = [
"unicode-segmentation",
]
[[package]]
name = "heck"
version = "0.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2540771e65fc8cb83cd6e8a237f70c319bd5c29f78ed1084ba5d50eeac86f7f9"
[[package]]
name = "hermit-abi"
version = "0.1.19"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "62b467343b94ba476dcb2500d242dadbb39557df889310ac77c5d99100aaac33"
dependencies = [
"libc",
]
[[package]]
name = "hmac"
version = "0.12.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6c49c37c09c17a53d937dfbb742eb3a961d65a994e6bcdcf37e7399d0cc8ab5e"
dependencies = [
"digest",
]
[[package]]
name = "hts-sys"
version = "2.0.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0dba4fc406d3686926c84f98fd53026b625319d119e6056a40313862a6e3c4eb"
dependencies = [
"bzip2-sys",
"cc",
"curl-sys",
"fs-utils",
"glob",
"libz-sys",
"lzma-sys",
"openssl-sys",
]
[[package]]
name = "humantime"
version = "2.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9a3a5bfb195931eeb336b2a7b4d761daec841b97f947d34394601737a7bba5e4"
[[package]]
name = "idna"
version = "0.3.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e14ddfc70884202db2244c223200c204c2bda1bc6e0998d11b5e024d657209e6"
dependencies = [
"unicode-bidi",
"unicode-normalization",
]
[[package]]
name = "ieee754"
version = "0.2.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9007da9cacbd3e6343da136e98b0d2df013f553d35bdec8b518f07bea768e19c"
[[package]]
name = "indexmap"
version = "1.9.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "10a35a97730320ffe8e2d410b5d3b69279b98d2c14bdb8b70ea89ecf7888d41e"
dependencies = [
"autocfg 1.1.0",
"hashbrown",
]
[[package]]
name = "indicatif"
version = "0.17.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bfddc9561e8baf264e0e45e197fd7696320026eb10a8180340debc27b18f535b"
dependencies = [
"console",
"number_prefix",
"rayon",
"unicode-width",
]
[[package]]
name = "instant"
version = "0.1.12"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7a5bbe824c507c5da5956355e86a746d82e0e1464f65d862cc5e71da70e94b2c"
dependencies = [
"cfg-if 1.0.0",
]
[[package]]
name = "itertools"
version = "0.10.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b0fd2260e829bddf4cb6ea802289de2f86d6a7a690192fbe91b3f46e0f2c8473"
dependencies = [
"either",
]
[[package]]
name = "itertools-num"
version = "0.1.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a872a22f9e6f7521ca557660adb96dd830e54f0f490fa115bb55dd69d38b27e7"
dependencies = [
"num-traits",
]
[[package]]
name = "itoa"
version = "0.4.8"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b71991ff56294aa922b450139ee08b3bfc70982c6b2c7562771375cf73542dd4"
[[package]]
name = "itoa"
version = "1.0.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4217ad341ebadf8d8e724e264f13e593e0648f5b3e94b3896a5df283be015ecc"
[[package]]
name = "jobserver"
version = "0.1.25"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "068b1ee6743e4d11fb9c6a1e6064b3693a1b600e7f5f5988047d98b3dc9fb90b"
dependencies = [
"libc",
]
[[package]]
name = "lazy_static"
version = "1.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e2abad23fbc42b3700f2f279844dc832adb2b2eb069b2df918f455c4e18cc646"
[[package]]
name = "libc"
version = "0.2.135"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "68783febc7782c6c5cb401fbda4de5a9898be1762314da0bb2c10ced61f18b0c"
[[package]]
name = "libgit2-sys"
version = "0.14.0+1.5.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "47a00859c70c8a4f7218e6d1cc32875c4b55f6799445b842b0d8ed5e4c3d959b"
dependencies = [
"cc",
"libc",
"libssh2-sys",
"libz-sys",
"openssl-sys",
"pkg-config",
]
[[package]]
name = "libm"
version = "0.2.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "292a948cd991e376cf75541fe5b97a1081d713c618b4f1b9500f8844e49eb565"
[[package]]
name = "libssh2-sys"
version = "0.2.23"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b094a36eb4b8b8c8a7b4b8ae43b2944502be3e59cd87687595cf6b0a71b3f4ca"
dependencies = [
"cc",
"libc",
"libz-sys",
"openssl-sys",
"pkg-config",
"vcpkg",
]
[[package]]
name = "libz-sys"
version = "1.1.8"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9702761c3935f8cc2f101793272e202c72b99da8f4224a19ddcf1279a6450bbf"
dependencies = [
"cc",
"cmake",
"libc",
"pkg-config",
"vcpkg",
]
[[package]]
name = "linear-map"
version = "1.2.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bfae20f6b19ad527b550c223fddc3077a547fc70cda94b9b566575423fd303ee"
[[package]]
name = "lock_api"
version = "0.4.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "435011366fe56583b16cf956f9df0095b405b82d76425bc8981c0e22e60ec4df"
dependencies = [
"autocfg 1.1.0",
"scopeguard",
]
[[package]]
name = "log"
version = "0.4.17"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "abb12e687cfb44aa40f41fc3978ef76448f9b6038cad6aef4259d3c095a2382e"
dependencies = [
"cfg-if 1.0.0",
]
[[package]]
name = "lzma-sys"
version = "0.1.19"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e06754c4acf47d49c727d5665ca9fb828851cda315ed3bd51edd148ef78a8772"
dependencies = [
"cc",
"libc",
"pkg-config",
]
[[package]]
name = "matrixmultiply"
version = "0.3.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "add85d4dd35074e6fedc608f8c8f513a3548619a9024b751949ef0e8e45a4d84"
dependencies = [
"rawpointer",
]
[[package]]
name = "memchr"
version = "2.5.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2dffe52ecf27772e601905b7522cb4ef790d2cc203488bbd0e2fe85fcb74566d"
[[package]]
name = "memoffset"
version = "0.6.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5aa361d4faea93603064a027415f07bd8e1d5c88c9fbf68bf56a285428fd79ce"
dependencies = [
"autocfg 1.1.0",
]
[[package]]
name = "miniz_oxide"
version = "0.5.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "96590ba8f175222643a85693f33d26e9c8a015f599c216509b1a6894af675d34"
dependencies = [
"adler",
]
[[package]]
name = "multimap"
version = "0.8.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e5ce46fe64a9d73be07dcbe690a38ce1b293be448fd8ce1e6c1b8062c9f72c6a"
dependencies = [
"serde",
]
[[package]]
name = "nalgebra"
version = "0.27.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "462fffe4002f4f2e1f6a9dcf12cc1a6fc0e15989014efc02a941d3e0f5dc2120"
dependencies = [
"approx",
"matrixmultiply",
"nalgebra-macros",
"num-complex",
"num-rational",
"num-traits",
"rand 0.8.5",
"rand_distr",
"simba",
"typenum",
]
[[package]]
name = "nalgebra-macros"
version = "0.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "01fcc0b8149b4632adc89ac3b7b31a12fb6099a0317a4eb2ebff574ef7de7218"
dependencies = [
"proc-macro2 1.0.47",
"quote 1.0.21",
"syn 1.0.102",
]
[[package]]
name = "ndarray"
version = "0.15.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "adb12d4e967ec485a5f71c6311fe28158e9d6f4bc4a447b474184d0f91a8fa32"
dependencies = [
"matrixmultiply",
"num-complex",
"num-integer",
"num-traits",
"rawpointer",
]
[[package]]
name = "newtype_derive"
version = "0.1.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ac8cd24d9f185bb7223958d8c1ff7a961b74b1953fd05dba7cc568a63b3861ec"
dependencies = [
"rustc_version",
]
[[package]]
name = "num-complex"
version = "0.4.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7ae39348c8bc5fbd7f40c727a9925f03517afd2ab27d46702108b6a7e5414c19"
dependencies = [
"num-traits",
]
[[package]]
name = "num-integer"
version = "0.1.45"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "225d3389fb3509a24c93f5c29eb6bde2586b98d9f016636dff58d7c6f7569cd9"
dependencies = [
"autocfg 1.1.0",
"num-traits",
]
[[package]]
name = "num-rational"
version = "0.4.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0638a1c9d0a3c0914158145bc76cff373a75a627e6ecbfb71cbe6f453a5a19b0"
dependencies = [
"autocfg 1.1.0",
"num-integer",
"num-traits",
]
[[package]]
name = "num-traits"
version = "0.2.15"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "578ede34cf02f8924ab9447f50c28075b4d3e5b269972345e7e0372b38c6cdcd"
dependencies = [
"autocfg 1.1.0",
"libm",
]
[[package]]
name = "num_cpus"
version = "1.13.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "19e64526ebdee182341572e50e9ad03965aa510cd94427a4549448f285e957a1"
dependencies = [
"hermit-abi",
"libc",
]
[[package]]
name = "num_threads"
version = "0.1.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2819ce041d2ee131036f4fc9d6ae7ae125a3a40e97ba64d04fe799ad9dabbb44"
dependencies = [
"libc",
]
[[package]]
name = "number_prefix"
version = "0.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "830b246a0e5f20af87141b25c173cd1b609bd7779a4617d6ec582abaf90870f3"
[[package]]
name = "object"
version = "0.29.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "21158b2c33aa6d4561f1c0a6ea283ca92bc54802a93b263e910746d679a7eb53"
dependencies = [
"memchr",
]
[[package]]
name = "once_cell"
version = "1.15.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e82dad04139b71a90c080c8463fe0dc7902db5192d939bd0950f074d014339e1"
[[package]]
name = "opaque-debug"
version = "0.3.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "624a8340c38c1b80fd549087862da4ba43e08858af025b236e509b6649fc13d5"
[[package]]
name = "openssl-probe"
version = "0.1.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ff011a302c396a5197692431fc1948019154afc178baf7d8e37367442a4601cf"
[[package]]
name = "openssl-src"
version = "111.22.0+1.1.1q"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8f31f0d509d1c1ae9cada2f9539ff8f37933831fd5098879e482aa687d659853"
dependencies = [
"cc",
]
[[package]]
name = "openssl-sys"
version = "0.9.76"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5230151e44c0f05157effb743e8d517472843121cf9243e8b81393edb5acd9ce"
dependencies = [
"autocfg 1.1.0",
"cc",
"libc",
"openssl-src",
"pkg-config",
"vcpkg",
]
[[package]]
name = "ordered-float"
version = "1.1.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3305af35278dd29f46fcdd139e0b1fbfae2153f0e5928b39b035542dd31e37b7"
dependencies = [
"num-traits",
]
[[package]]
name = "ordered-float"
version = "3.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d84eb1409416d254e4a9c8fa56cc24701755025b458f0fcd8e59e1f5f40c23bf"
dependencies = [
"num-traits",
]
[[package]]
name = "os_str_bytes"
version = "6.3.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9ff7415e9ae3fff1225851df9e0d9e4e5479f947619774677a63572e55e80eff"
[[package]]
name = "password-hash"
version = "0.4.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7676374caaee8a325c9e7a2ae557f216c5563a171d6997b0ef8a65af35147700"
dependencies = [
"base64ct",
"rand_core 0.6.4",
"subtle",
]
[[package]]
name = "paste"
version = "1.0.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b1de2e551fb905ac83f73f7aedf2f0cb4a0da7e35efa24a202a936269f1f18e1"
[[package]]
name = "pbkdf2"
version = "0.11.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "83a0692ec44e4cf1ef28ca317f14f8f07da2d95ec3fa01f86e4467b725e60917"
dependencies = [
"digest",
"hmac",
"password-hash",
"sha2",
]
[[package]]
name = "percent-encoding"
version = "2.2.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "478c572c3d73181ff3c2539045f6eb99e5491218eae919370993b890cdbdd98e"
[[package]]
name = "petgraph"
version = "0.6.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e6d5014253a1331579ce62aa67443b4a658c5e7dd03d4bc6d302b94474888143"
dependencies = [
"fixedbitset",
"indexmap",
]
[[package]]
name = "pkg-config"
version = "0.3.25"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1df8c4ec4b0627e53bdf214615ad287367e482558cf84b109250b37464dc03ae"
[[package]]
name = "ppv-lite86"
version = "0.2.16"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "eb9f9e6e233e5c4a35559a617bf40a4ec447db2e84c20b55a6f83167b7e57872"
[[package]]
name = "proc-macro-error"
version = "1.0.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "da25490ff9892aab3fcf7c36f08cfb902dd3e71ca0f9f9517bea02a73a5ce38c"
dependencies = [
"proc-macro-error-attr",
"proc-macro2 1.0.47",
"quote 1.0.21",
"syn 1.0.102",
"version_check",
]
[[package]]
name = "proc-macro-error-attr"
version = "1.0.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a1be40180e52ecc98ad80b184934baf3d0d29f979574e439af5a55274b35f869"
dependencies = [
"proc-macro2 1.0.47",
"quote 1.0.21",
"version_check",
]
[[package]]
name = "proc-macro2"
version = "0.4.30"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "cf3d2011ab5c909338f7887f4fc896d35932e29146c12c8d01da6b22a80ba759"
dependencies = [
"unicode-xid 0.1.0",
]
[[package]]
name = "proc-macro2"
version = "1.0.47"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5ea3d908b0e36316caf9e9e2c4625cdde190a7e6f440d794667ed17a1855e725"
dependencies = [
"unicode-ident",
]
[[package]]
name = "quick-error"
version = "1.2.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a1d01941d82fa2ab50be1e79e6714289dd7cde78eba4c074bc5a4374f650dfe0"
[[package]]
name = "quote"
version = "0.6.13"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6ce23b6b870e8f94f81fb0a363d65d86675884b34a09043c81e5562f11c1f8e1"
dependencies = [
"proc-macro2 0.4.30",
]
[[package]]
name = "quote"
version = "1.0.21"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bbe448f377a7d6961e30f5955f9b8d106c3f5e449d493ee1b125c1d43c2b5179"
dependencies = [
"proc-macro2 1.0.47",
]
[[package]]
name = "rand"
version = "0.6.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6d71dacdc3c88c1fde3885a3be3fbab9f35724e6ce99467f7d9c5026132184ca"
dependencies = [
"autocfg 0.1.8",
"libc",
"rand_chacha 0.1.1",
"rand_core 0.4.2",
"rand_hc",
"rand_isaac",
"rand_jitter",
"rand_os",
"rand_pcg",
"rand_xorshift",
"winapi",
]
[[package]]
name = "rand"
version = "0.8.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "34af8d1a0e25924bc5b7c43c079c942339d8f0a8b57c39049bef581b46327404"
dependencies = [
"libc",
"rand_chacha 0.3.1",
"rand_core 0.6.4",
]
[[package]]
name = "rand_chacha"
version = "0.1.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "556d3a1ca6600bfcbab7c7c91ccb085ac7fbbcd70e008a98742e7847f4f7bcef"
dependencies = [
"autocfg 0.1.8",
"rand_core 0.3.1",
]
[[package]]
name = "rand_chacha"
version = "0.3.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e6c10a63a0fa32252be49d21e7709d4d4baf8d231c2dbce1eaa8141b9b127d88"
dependencies = [
"ppv-lite86",
"rand_core 0.6.4",
]
[[package]]
name = "rand_core"
version = "0.3.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7a6fdeb83b075e8266dcc8762c22776f6877a63111121f5f8c7411e5be7eed4b"
dependencies = [
"rand_core 0.4.2",
]
[[package]]
name = "rand_core"
version = "0.4.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9c33a3c44ca05fa6f1807d8e6743f3824e8509beca625669633be0acbdf509dc"
[[package]]
name = "rand_core"
version = "0.6.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ec0be4795e2f6a28069bec0b5ff3e2ac9bafc99e6a9a7dc3547996c5c816922c"
dependencies = [
"getrandom",
]
[[package]]
name = "rand_distr"
version = "0.4.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "32cb0b9bc82b0a0876c2dd994a7e7a2683d3e7390ca40e6886785ef0c7e3ee31"
dependencies = [
"num-traits",
"rand 0.8.5",
]
[[package]]
name = "rand_hc"
version = "0.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7b40677c7be09ae76218dc623efbf7b18e34bced3f38883af07bb75630a21bc4"
dependencies = [
"rand_core 0.3.1",
]
[[package]]
name = "rand_isaac"
version = "0.1.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ded997c9d5f13925be2a6fd7e66bf1872597f759fd9dd93513dd7e92e5a5ee08"
dependencies = [
"rand_core 0.3.1",
]
[[package]]
name = "rand_jitter"
version = "0.1.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1166d5c91dc97b88d1decc3285bb0a99ed84b05cfd0bc2341bdf2d43fc41e39b"
dependencies = [
"libc",
"rand_core 0.4.2",
"winapi",
]
[[package]]
name = "rand_os"
version = "0.1.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7b75f676a1e053fc562eafbb47838d67c84801e38fc1ba459e8f180deabd5071"
dependencies = [
"cloudabi",
"fuchsia-cprng",
"libc",
"rand_core 0.4.2",
"rdrand",
"winapi",
]
[[package]]
name = "rand_pcg"
version = "0.1.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "abf9b09b01790cfe0364f52bf32995ea3c39f4d2dd011eac241d2914146d0b44"
dependencies = [
"autocfg 0.1.8",
"rand_core 0.4.2",
]
[[package]]
name = "rand_xorshift"
version = "0.1.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "cbf7e9e623549b0e21f6e97cf8ecf247c1a8fd2e8a992ae265314300b2455d5c"
dependencies = [
"rand_core 0.3.1",
]
[[package]]
name = "rawpointer"
version = "0.2.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "60a357793950651c4ed0f3f52338f53b2f809f32d83a07f72909fa13e4c6c1e3"
[[package]]
name = "rayon"
version = "1.5.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bd99e5772ead8baa5215278c9b15bf92087709e9c1b2d1f97cdb5a183c933a7d"
dependencies = [
"autocfg 1.1.0",
"crossbeam-deque",
"either",
"rayon-core",
]
[[package]]
name = "rayon-core"
version = "1.9.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "258bcdb5ac6dad48491bb2992db6b7cf74878b0384908af124823d118c99683f"
dependencies = [
"crossbeam-channel",
"crossbeam-deque",
"crossbeam-utils",
"num_cpus",
]
[[package]]
name = "rdrand"
version = "0.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "678054eb77286b51581ba43620cc911abf02758c91f93f479767aed0f90458b2"
dependencies = [
"rand_core 0.3.1",
]
[[package]]
name = "redox_syscall"
version = "0.2.16"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "fb5a58c1855b4b6819d59012155603f0b22ad30cad752600aadfcb695265519a"
dependencies = [
"bitflags",
]
[[package]]
name = "regex"
version = "1.6.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4c4eb3267174b8c6c2f654116623910a0fef09c4753f8dd83db29c48a0df988b"
dependencies = [
"aho-corasick",
"memchr",
"regex-syntax",
]
[[package]]
name = "regex-automata"
version = "0.1.10"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6c230d73fb8d8c1b9c0b3135c5142a8acee3a0558fb8db5cf1cb65f8d7862132"
[[package]]
name = "regex-syntax"
version = "0.6.27"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a3f87b73ce11b1619a3c6332f45341e0047173771e8b8b73f87bfeefb7b56244"
[[package]]
name = "remove_dir_all"
version = "0.5.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3acd125665422973a33ac9d3dd2df85edad0f4ae9b00dafb1a05e43a9f5ef8e7"
dependencies = [
"winapi",
]
[[package]]
name = "roff"
version = "0.2.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b833d8d034ea094b1ea68aa6d5c740e0d04bad9d16568d08ba6f76823a114316"
[[package]]
name = "rust-htslib"
version = "0.39.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "239ef7334dbf59acd56b7a6fa62a525ed7e36d6239a686ed4ff61bc794108e53"
dependencies = [
"bio-types 0.13.0",
"byteorder",
"custom_derive",
"derive-new",
"hts-sys",
"ieee754",
"lazy_static",
"libc",
"linear-map",
"newtype_derive",
"regex",
"thiserror",
"url",
]
[[package]]
name = "rustc-demangle"
version = "0.1.21"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7ef03e0a2b150c7a90d01faf6254c9c48a41e95fb2a8c2ac1c6f0d2b9aefc342"
[[package]]
name = "rustc_version"
version = "0.1.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c5f5376ea5e30ce23c03eb77cbe4962b988deead10910c372b226388b594c084"
dependencies = [
"semver",
]
[[package]]
name = "rustversion"
version = "1.0.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "97477e48b4cf8603ad5f7aaf897467cf42ab4218a38ef76fb14c2d6773a6d6a8"
[[package]]
name = "ryu"
version = "1.0.11"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4501abdff3ae82a1c1b477a17252eb69cee9e66eb915c1abaa4f44d873df9f09"
[[package]]
name = "schannel"
version = "0.1.20"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "88d6731146462ea25d9244b2ed5fd1d716d25c52e4d54aa4fb0f3c4e9854dbe2"
dependencies = [
"lazy_static",
"windows-sys",
]
[[package]]
name = "scopeguard"
version = "1.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d29ab0c6d3fc0ee92fe66e2d99f700eab17a8d57d1c1d3b748380fb20baa78cd"
[[package]]
name = "semver"
version = "0.1.20"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d4f410fedcf71af0345d7607d246e7ad15faaadd49d240ee3b24e5dc21a820ac"
[[package]]
name = "serde"
version = "1.0.145"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "728eb6351430bccb993660dfffc5a72f91ccc1295abaa8ce19b27ebe4f75568b"
dependencies = [
"serde_derive",
]
[[package]]
name = "serde_derive"
version = "1.0.145"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "81fa1584d3d1bcacd84c277a0dfe21f5b0f6accf4a23d04d4c6d61f1af522b4c"
dependencies = [
"proc-macro2 1.0.47",
"quote 1.0.21",
"syn 1.0.102",
]
[[package]]
name = "serde_json"
version = "1.0.87"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6ce777b7b150d76b9cf60d28b55f5847135a003f7d7350c6be7a773508ce7d45"
dependencies = [
"itoa 1.0.4",
"ryu",
"serde",
]
[[package]]
name = "sha1"
version = "0.10.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f04293dc80c3993519f2d7f6f511707ee7094fe0c6d3406feb330cdb3540eba3"
dependencies = [
"cfg-if 1.0.0",
"cpufeatures",
"digest",
]
[[package]]
name = "sha2"
version = "0.10.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "82e6b795fe2e3b1e845bafcb27aa35405c4d47cdfc92af5fc8d3002f76cebdc0"
dependencies = [
"cfg-if 1.0.0",
"cpufeatures",
"digest",
]
[[package]]
name = "simba"
version = "0.5.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8e82063457853d00243beda9952e910b82593e4b07ae9f721b9278a99a0d3d5c"
dependencies = [
"approx",
"num-complex",
"num-traits",
"paste",
]
[[package]]
name = "socket2"
version = "0.4.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "02e2d2db9033d13a1567121ddd7a095ee144db4e1ca1b1bda3419bc0da294ebd"
dependencies = [
"libc",
"winapi",
]
[[package]]
name = "spin"
version = "0.9.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7f6002a767bff9e83f8eeecf883ecb8011875a21ae8da43bffb817a57e78cc09"
dependencies = [
"lock_api",
]
[[package]]
name = "statrs"
version = "0.15.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "05bdbb8e4e78216a85785a85d3ec3183144f98d0097b9281802c019bb07a6f05"
dependencies = [
"approx",
"lazy_static",
"nalgebra",
"num-traits",
"rand 0.8.5",
]
[[package]]
name = "strsim"
version = "0.10.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "73473c0e59e6d5812c5dfe2a064a6444949f089e20eec9a2e5506596494e4623"
[[package]]
name = "strum"
version = "0.23.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "cae14b91c7d11c9a851d3fbc80a963198998c2a64eec840477fa92d8ce9b70bb"
[[package]]
name = "strum_macros"
version = "0.23.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5bb0dc7ee9c15cea6199cde9a127fa16a4c5819af85395457ad72d68edc85a38"
dependencies = [
"heck 0.3.3",
"proc-macro2 1.0.47",
"quote 1.0.21",
"rustversion",
"syn 1.0.102",
]
[[package]]
name = "strum_macros"
version = "0.24.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1e385be0d24f186b4ce2f9982191e7101bb737312ad61c1f2f984f34bcf85d59"
dependencies = [
"heck 0.4.0",
"proc-macro2 1.0.47",
"quote 1.0.21",
"rustversion",
"syn 1.0.102",
]
[[package]]
name = "subtle"
version = "2.4.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6bdef32e8150c2a081110b42772ffe7d7c9032b606bc226c8260fd97e0976601"
[[package]]
name = "syn"
version = "0.15.44"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9ca4b3b69a77cbe1ffc9e198781b7acb0c7365a883670e8f1c1bc66fba79a5c5"
dependencies = [
"proc-macro2 0.4.30",
"quote 0.6.13",
"unicode-xid 0.1.0",
]
[[package]]
name = "syn"
version = "1.0.102"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3fcd952facd492f9be3ef0d0b7032a6e442ee9b361d4acc2b1d0c4aaa5f613a1"
dependencies = [
"proc-macro2 1.0.47",
"quote 1.0.21",
"unicode-ident",
]
[[package]]
name = "synstructure"
version = "0.12.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f36bdaa60a83aca3921b5259d5400cbf5e90fc51931376a9bd4a0eb79aa7210f"
dependencies = [
"proc-macro2 1.0.47",
"quote 1.0.21",
"syn 1.0.102",
"unicode-xid 0.2.4",
]
[[package]]
name = "tch"
version = "0.9.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3d46cf7b3ac7264ed8ec3e88a3dea3a9c1a8271a878d099fd743e63a9976d7d1"
dependencies = [
"half",
"lazy_static",
"libc",
"ndarray",
"rand 0.8.5",
"thiserror",
"torch-sys",
"zip",
]
[[package]]
name = "tempfile"
version = "3.3.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5cdb1ef4eaeeaddc8fbd371e5017057064af0911902ef36b39801f67cc6d79e4"
dependencies = [
"cfg-if 1.0.0",
"fastrand",
"libc",
"redox_syscall",
"remove_dir_all",
"winapi",
]
[[package]]
name = "termcolor"
version = "1.1.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bab24d30b911b2376f3a13cc2cd443142f0c81dda04c118693e35b3835757755"
dependencies = [
"winapi-util",
]
[[package]]
name = "terminal_size"
version = "0.1.17"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "633c1a546cee861a1a6d0dc69ebeca693bf4296661ba7852b9d21d159e0506df"
dependencies = [
"libc",
"winapi",
]
[[package]]
name = "thiserror"
version = "1.0.37"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "10deb33631e3c9018b9baf9dcbbc4f737320d2b576bac10f6aefa048fa407e3e"
dependencies = [
"thiserror-impl",
]
[[package]]
name = "thiserror-impl"
version = "1.0.37"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "982d17546b47146b28f7c22e3d08465f6b8903d0ea13c1660d9d84a6e7adcdbb"
dependencies = [
"proc-macro2 1.0.47",
"quote 1.0.21",
"syn 1.0.102",
]
[[package]]
name = "time"
version = "0.3.15"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d634a985c4d4238ec39cacaed2e7ae552fbd3c476b552c1deac3021b7d7eaf0c"
dependencies = [
"itoa 1.0.4",
"libc",
"num_threads",
"time-macros",
]
[[package]]
name = "time-macros"
version = "0.2.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "42657b1a6f4d817cda8e7a0ace261fe0cc946cf3a80314390b22cc61ae080792"
[[package]]
name = "tinyvec"
version = "1.6.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "87cc5ceb3875bb20c2890005a4e226a4651264a5c75edb2421b52861a0a0cb50"
dependencies = [
"tinyvec_macros",
]
[[package]]
name = "tinyvec_macros"
version = "0.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "cda74da7e1a664f795bb1f8a87ec406fb89a02522cf6e50620d016add6dbbf5c"
[[package]]
name = "torch-sys"
version = "0.9.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4aebf5bacfdacc38c539c17e5444c935c863d2b7a7b66bbd7ebfbaf32f98834e"
dependencies = [
"anyhow",
"cc",
"curl",
"libc",
"zip",
]
[[package]]
name = "triple_accel"
version = "0.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "22048bc95dfb2ffd05b1ff9a756290a009224b60b2f0e7525faeee7603851e63"
[[package]]
name = "typenum"
version = "1.15.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "dcf81ac59edc17cc8697ff311e8f5ef2d99fcbd9817b34cec66f90b6c3dfd987"
[[package]]
name = "unicode-bidi"
version = "0.3.8"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "099b7128301d285f79ddd55b9a83d5e6b9e97c92e0ea0daebee7263e932de992"
[[package]]
name = "unicode-ident"
version = "1.0.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6ceab39d59e4c9499d4e5a8ee0e2735b891bb7308ac83dfb4e80cad195c9f6f3"
[[package]]
name = "unicode-normalization"
version = "0.1.22"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5c5713f0fc4b5db668a2ac63cdb7bb4469d8c9fed047b1d0292cc7b0ce2ba921"
dependencies = [
"tinyvec",
]
[[package]]
name = "unicode-segmentation"
version = "1.10.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0fdbf052a0783de01e944a6ce7a8cb939e295b1e7be835a1112c3b9a7f047a5a"
[[package]]
name = "unicode-width"
version = "0.1.10"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c0edd1e5b14653f783770bce4a4dabb4a5108a5370a5f5d8cfe8710c361f6c8b"
[[package]]
name = "unicode-xid"
version = "0.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "fc72304796d0818e357ead4e000d19c9c174ab23dc11093ac919054d20a6a7fc"
[[package]]
name = "unicode-xid"
version = "0.2.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f962df74c8c05a667b5ee8bcf162993134c104e96440b663c8daa176dc772d8c"
[[package]]
name = "url"
version = "2.3.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0d68c799ae75762b8c3fe375feb6600ef5602c883c5d21eb51c09f22b83c4643"
dependencies = [
"form_urlencoded",
"idna",
"percent-encoding",
]
[[package]]
name = "vcpkg"
version = "0.2.15"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "accd4ea62f7bb7a82fe23066fb0957d48ef677f6eeb8215f372f52e48bb32426"
[[package]]
name = "vec_map"
version = "0.8.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f1bddf1187be692e79c5ffeab891132dfb0f236ed36a43c7ed39f1165ee20191"
dependencies = [
"serde",
]
[[package]]
name = "version_check"
version = "0.9.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "49874b5167b65d7193b8aba1567f5c7d93d001cafc34600cee003eda787e483f"
[[package]]
name = "wasi"
version = "0.11.0+wasi-snapshot-preview1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9c8d87e72b64a3b4db28d11ce29237c246188f4f51057d65a7eab63b7987e423"
[[package]]
name = "winapi"
version = "0.3.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5c839a674fcd7a98952e593242ea400abe93992746761e38641405d28b00f419"
dependencies = [
"winapi-i686-pc-windows-gnu",
"winapi-x86_64-pc-windows-gnu",
]
[[package]]
name = "winapi-i686-pc-windows-gnu"
version = "0.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ac3b87c63620426dd9b991e5ce0329eff545bccbbb34f3be09ff6fb6ab51b7b6"
[[package]]
name = "winapi-util"
version = "0.1.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "70ec6ce85bb158151cae5e5c87f95a8e97d2c0c4b001223f33a334e3ce5de178"
dependencies = [
"winapi",
]
[[package]]
name = "winapi-x86_64-pc-windows-gnu"
version = "0.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "712e227841d057c1ee1cd2fb22fa7e5a5461ae8e48fa2ca79ec42cfc1931183f"
[[package]]
name = "windows-sys"
version = "0.36.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ea04155a16a59f9eab786fe12a4a450e75cdb175f9e0d80da1e17db09f55b8d2"
dependencies = [
"windows_aarch64_msvc",
"windows_i686_gnu",
"windows_i686_msvc",
"windows_x86_64_gnu",
"windows_x86_64_msvc",
]
[[package]]
name = "windows_aarch64_msvc"
version = "0.36.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9bb8c3fd39ade2d67e9874ac4f3db21f0d710bee00fe7cab16949ec184eeaa47"
[[package]]
name = "windows_i686_gnu"
version = "0.36.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "180e6ccf01daf4c426b846dfc66db1fc518f074baa793aa7d9b9aaeffad6a3b6"
[[package]]
name = "windows_i686_msvc"
version = "0.36.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e2e7917148b2812d1eeafaeb22a97e4813dfa60a3f8f78ebe204bcc88f12f024"
[[package]]
name = "windows_x86_64_gnu"
version = "0.36.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4dcd171b8776c41b97521e5da127a2d86ad280114807d0b2ab1e462bc764d9e1"
[[package]]
name = "windows_x86_64_msvc"
version = "0.36.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c811ca4a8c853ef420abd8592ba53ddbbac90410fab6903b3e79972a631f7680"
[[package]]
name = "zip"
version = "0.6.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "537ce7411d25e54e8ae21a7ce0b15840e7bfcff15b51d697ec3266cc76bdf080"
dependencies = [
"aes",
"byteorder",
"bzip2",
"constant_time_eq",
"crc32fast",
"crossbeam-utils",
"flate2",
"hmac",
"pbkdf2",
"sha1",
"time",
"zstd",
]
[[package]]
name = "zstd"
version = "0.11.2+zstd.1.5.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "20cc960326ece64f010d2d2107537f26dc589a6573a316bd5b1dba685fa5fde4"
dependencies = [
"zstd-safe",
]
[[package]]
name = "zstd-safe"
version = "5.0.2+zstd.1.5.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1d2a5585e04f9eea4b2a3d1eca508c4dee9592a89ef6f450c11719da0726f4db"
dependencies = [
"libc",
"zstd-sys",
]
[[package]]
name = "zstd-sys"
version = "2.0.1+zstd.1.5.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9fd07cbbc53846d9145dbffdf6dd09a7a0aa52be46741825f5c97bdd4f73f12b"
dependencies = [
"cc",
"libc",
]