fibertools-rs 0.0.5

fiberseq toolkit in rust
Documentation 
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# `fibertools-rs`
[![Conda (channel only)](https://img.shields.io/conda/vn/bioconda/fibertools-rs?color=green)](https://anaconda.org/bioconda/fibertools-rs)
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`fibertools-rs` a CLI tool for interacting with fiberseq bam files.

# Install
## From [![crates.io version](https://img.shields.io/crates/v/fibertools-rs)](https://crates.io/crates/fibertools-rs) (recommended)
```
cargo install fibertools-rs
```
[How to install `cargo`.](https://doc.rust-lang.org/cargo/getting-started/installation.html)

## From [![Conda (channel only)](https://img.shields.io/conda/vn/bioconda/fibertools-rs?color=green)](https://anaconda.org/bioconda/fibertools-rs) (latest version not always available)
```
mamba install -c bioconda fibertools-rs
```
## From `github` (active development)
```
cargo install --git https://github.com/mrvollger/fibertools-rs
```
# `fibertools`

[Help page for fibertools](/docs/ft--help.md)

# `ft extract`
[Help page for extract](/docs/ft-extract-help.md). Extracts fiberseq data from a bam file into plain text.


### `ft-extract --all`
The extract all option is a special option that tries to extract all the fiberseq data into a tabular format. The following is an image of the output. Note that the column names will be preserved across different software versions (unless otherwise noted); however, the order may change and new columns may be added. Therefore, when loading the data (with `pandas` e.g.) be sure to use the column names as opposed to indexes for manipulation.
![ft-extract all](/images/ft-extract-all.png)


# `ft-center`
[Help page for center](/docs/ft-center-help.md). Center a fiberseq reads (bam) around a reference position(s).

![center](/images/center.png)