fhirkit 0.1.0

// @generated by fhirkit-gen from hl7.fhir.r4.core 4.0.1. Do not edit.
//! The FHIR R4 `Specimen` resource.

#![allow(
    unused_imports,
    clippy::large_enum_variant,
    clippy::too_many_lines,
    clippy::doc_markdown
)]

use crate::decode::{
    choice_key, required, required_list, resource_type, Choice, Decoder, FhirJson, Obj, ObjWriter,
};
use crate::json::Json;
use crate::primitive::{Decimal, Kind, Primitive};
use crate::r4::*;

/// A sample to be used for analysis.
///
/// FHIR path: `Specimen`.
#[cfg(feature = "clinical")]
#[derive(Debug, Clone, PartialEq, Default)]
pub struct Specimen {
    /// `id` (0..1): Logical id of this artifact
    pub id: Option<String>,
    /// `meta` (0..1): Metadata about the resource
    pub meta: Option<Meta>,
    /// `implicitRules` (0..1): A set of rules under which this content was created
    pub implicit_rules: Option<Primitive<String>>,
    /// `language` (0..1): Language of the resource content
    pub language: Option<Primitive<String>>,
    /// `text` (0..1): Text summary of the resource, for human interpretation
    pub text: Option<Narrative>,
    /// `contained` (0..*): Contained, inline Resources
    pub contained: Vec<Resource>,
    /// `extension` (0..*): Additional content defined by implementations
    pub extension: Vec<Extension>,
    /// `modifierExtension` (0..*): Extensions that cannot be ignored
    pub modifier_extension: Vec<Extension>,
    /// `identifier` (0..*): External Identifier
    pub identifier: Vec<Identifier>,
    /// `accessionIdentifier` (0..1): Identifier assigned by the lab
    pub accession_identifier: Option<Identifier>,
    /// `status` (0..1): available | unavailable | unsatisfactory | entered-in-error
    pub status: Option<Primitive<String>>,
    /// `type` (0..1): Kind of material that forms the specimen
    pub type_: Option<CodeableConcept>,
    /// `subject` (0..1): Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device
    pub subject: Option<Reference>,
    /// `receivedTime` (0..1): The time when specimen was received for processing
    pub received_time: Option<Primitive<String>>,
    /// `parent` (0..*): Specimen from which this specimen originated
    pub parent: Vec<Reference>,
    /// `request` (0..*): Why the specimen was collected
    pub request: Vec<Reference>,
    /// `collection` (0..1): Collection details
    pub collection: Option<SpecimenCollection>,
    /// `processing` (0..*): Processing and processing step details
    pub processing: Vec<SpecimenProcessing>,
    /// `container` (0..*): Direct container of specimen (tube/slide, etc.)
    pub container: Vec<SpecimenContainer>,
    /// `condition` (0..*): State of the specimen
    pub condition: Vec<CodeableConcept>,
    /// `note` (0..*): Comments
    pub note: Vec<Annotation>,
}

#[cfg(feature = "clinical")]
impl FhirJson for Specimen {
    const TYPE_NAME: &'static str = "Specimen";

    fn decode(v: &Json, d: &mut Decoder) -> Option<Self> {
        let mut o = Obj::new(v, d)?;
        resource_type(&mut o, d, "Specimen");
        let r = Specimen {
            id: o.string(d, "id"),
            meta: o.one(d, "meta"),
            implicit_rules: o.prim(d, "implicitRules", Kind::Uri),
            language: o.prim(d, "language", Kind::Code),
            text: o.one(d, "text"),
            contained: o.list(d, "contained"),
            extension: o.list(d, "extension"),
            modifier_extension: o.list(d, "modifierExtension"),
            identifier: o.list(d, "identifier"),
            accession_identifier: o.one(d, "accessionIdentifier"),
            status: o.prim(d, "status", Kind::Code),
            type_: o.one(d, "type"),
            subject: o.one(d, "subject"),
            received_time: o.prim(d, "receivedTime", Kind::DateTime),
            parent: o.list(d, "parent"),
            request: o.list(d, "request"),
            collection: o.one(d, "collection"),
            processing: o.list(d, "processing"),
            container: o.list(d, "container"),
            condition: o.list(d, "condition"),
            note: o.list(d, "note"),
        };
        o.finish(d);
        Some(r)
    }

    fn encode(&self) -> Json {
        let mut w = ObjWriter::new();
        w.raw("resourceType", Json::String("Specimen".into()));
        w.string("id", &self.id);
        w.one("meta", &self.meta);
        w.prim("implicitRules", &self.implicit_rules);
        w.prim("language", &self.language);
        w.one("text", &self.text);
        w.list("contained", &self.contained);
        w.list("extension", &self.extension);
        w.list("modifierExtension", &self.modifier_extension);
        w.list("identifier", &self.identifier);
        w.one("accessionIdentifier", &self.accession_identifier);
        w.prim("status", &self.status);
        w.one("type", &self.type_);
        w.one("subject", &self.subject);
        w.prim("receivedTime", &self.received_time);
        w.list("parent", &self.parent);
        w.list("request", &self.request);
        w.one("collection", &self.collection);
        w.list("processing", &self.processing);
        w.list("container", &self.container);
        w.list("condition", &self.condition);
        w.list("note", &self.note);
        w.finish()
    }
}

/// Collection details
///
/// FHIR path: `Specimen.collection`.
#[cfg(feature = "clinical")]
#[derive(Debug, Clone, PartialEq, Default)]
pub struct SpecimenCollection {
    /// `id` (0..1): Unique id for inter-element referencing
    pub id: Option<String>,
    /// `extension` (0..*): Additional content defined by implementations
    pub extension: Vec<Extension>,
    /// `modifierExtension` (0..*): Extensions that cannot be ignored even if unrecognized
    pub modifier_extension: Vec<Extension>,
    /// `collector` (0..1): Who collected the specimen
    pub collector: Option<Reference>,
    /// `collected[x]` (0..1): Collection time
    pub collected: Option<SpecimenCollectionCollected>,
    /// `duration` (0..1): How long it took to collect specimen
    pub duration: Option<Duration>,
    /// `quantity` (0..1): The quantity of specimen collected
    pub quantity: Option<Quantity>,
    /// `method` (0..1): Technique used to perform collection
    pub method: Option<CodeableConcept>,
    /// `bodySite` (0..1): Anatomical collection site
    pub body_site: Option<CodeableConcept>,
    /// `fastingStatus[x]` (0..1): Whether or how long patient abstained from food and/or drink
    pub fasting_status: Option<SpecimenCollectionFastingStatus>,
}

#[cfg(feature = "clinical")]
impl FhirJson for SpecimenCollection {
    const TYPE_NAME: &'static str = "SpecimenCollection";

    fn decode(v: &Json, d: &mut Decoder) -> Option<Self> {
        let mut o = Obj::new(v, d)?;
        let r = SpecimenCollection {
            id: o.string(d, "id"),
            extension: o.list(d, "extension"),
            modifier_extension: o.list(d, "modifierExtension"),
            collector: o.one(d, "collector"),
            collected: o.choice(d, "collected"),
            duration: o.one(d, "duration"),
            quantity: o.one(d, "quantity"),
            method: o.one(d, "method"),
            body_site: o.one(d, "bodySite"),
            fasting_status: o.choice(d, "fastingStatus"),
        };
        o.finish(d);
        Some(r)
    }

    fn encode(&self) -> Json {
        let mut w = ObjWriter::new();
        w.string("id", &self.id);
        w.list("extension", &self.extension);
        w.list("modifierExtension", &self.modifier_extension);
        w.one("collector", &self.collector);
        w.choice("collected", &self.collected);
        w.one("duration", &self.duration);
        w.one("quantity", &self.quantity);
        w.one("method", &self.method);
        w.one("bodySite", &self.body_site);
        w.choice("fastingStatus", &self.fasting_status);
        w.finish()
    }
}

/// Processing and processing step details
///
/// FHIR path: `Specimen.processing`.
#[cfg(feature = "clinical")]
#[derive(Debug, Clone, PartialEq, Default)]
pub struct SpecimenProcessing {
    /// `id` (0..1): Unique id for inter-element referencing
    pub id: Option<String>,
    /// `extension` (0..*): Additional content defined by implementations
    pub extension: Vec<Extension>,
    /// `modifierExtension` (0..*): Extensions that cannot be ignored even if unrecognized
    pub modifier_extension: Vec<Extension>,
    /// `description` (0..1): Textual description of procedure
    pub description: Option<Primitive<String>>,
    /// `procedure` (0..1): Indicates the treatment step applied to the specimen
    pub procedure: Option<CodeableConcept>,
    /// `additive` (0..*): Material used in the processing step
    pub additive: Vec<Reference>,
    /// `time[x]` (0..1): Date and time of specimen processing
    pub time: Option<SpecimenProcessingTime>,
}

#[cfg(feature = "clinical")]
impl FhirJson for SpecimenProcessing {
    const TYPE_NAME: &'static str = "SpecimenProcessing";

    fn decode(v: &Json, d: &mut Decoder) -> Option<Self> {
        let mut o = Obj::new(v, d)?;
        let r = SpecimenProcessing {
            id: o.string(d, "id"),
            extension: o.list(d, "extension"),
            modifier_extension: o.list(d, "modifierExtension"),
            description: o.prim(d, "description", Kind::String),
            procedure: o.one(d, "procedure"),
            additive: o.list(d, "additive"),
            time: o.choice(d, "time"),
        };
        o.finish(d);
        Some(r)
    }

    fn encode(&self) -> Json {
        let mut w = ObjWriter::new();
        w.string("id", &self.id);
        w.list("extension", &self.extension);
        w.list("modifierExtension", &self.modifier_extension);
        w.prim("description", &self.description);
        w.one("procedure", &self.procedure);
        w.list("additive", &self.additive);
        w.choice("time", &self.time);
        w.finish()
    }
}

/// Direct container of specimen (tube/slide, etc.)
///
/// FHIR path: `Specimen.container`.
#[cfg(feature = "clinical")]
#[derive(Debug, Clone, PartialEq, Default)]
pub struct SpecimenContainer {
    /// `id` (0..1): Unique id for inter-element referencing
    pub id: Option<String>,
    /// `extension` (0..*): Additional content defined by implementations
    pub extension: Vec<Extension>,
    /// `modifierExtension` (0..*): Extensions that cannot be ignored even if unrecognized
    pub modifier_extension: Vec<Extension>,
    /// `identifier` (0..*): Id for the container
    pub identifier: Vec<Identifier>,
    /// `description` (0..1): Textual description of the container
    pub description: Option<Primitive<String>>,
    /// `type` (0..1): Kind of container directly associated with specimen
    pub type_: Option<CodeableConcept>,
    /// `capacity` (0..1): Container volume or size
    pub capacity: Option<Quantity>,
    /// `specimenQuantity` (0..1): Quantity of specimen within container
    pub specimen_quantity: Option<Quantity>,
    /// `additive[x]` (0..1): Additive associated with container
    pub additive: Option<SpecimenContainerAdditive>,
}

#[cfg(feature = "clinical")]
impl FhirJson for SpecimenContainer {
    const TYPE_NAME: &'static str = "SpecimenContainer";

    fn decode(v: &Json, d: &mut Decoder) -> Option<Self> {
        let mut o = Obj::new(v, d)?;
        let r = SpecimenContainer {
            id: o.string(d, "id"),
            extension: o.list(d, "extension"),
            modifier_extension: o.list(d, "modifierExtension"),
            identifier: o.list(d, "identifier"),
            description: o.prim(d, "description", Kind::String),
            type_: o.one(d, "type"),
            capacity: o.one(d, "capacity"),
            specimen_quantity: o.one(d, "specimenQuantity"),
            additive: o.choice(d, "additive"),
        };
        o.finish(d);
        Some(r)
    }

    fn encode(&self) -> Json {
        let mut w = ObjWriter::new();
        w.string("id", &self.id);
        w.list("extension", &self.extension);
        w.list("modifierExtension", &self.modifier_extension);
        w.list("identifier", &self.identifier);
        w.prim("description", &self.description);
        w.one("type", &self.type_);
        w.one("capacity", &self.capacity);
        w.one("specimenQuantity", &self.specimen_quantity);
        w.choice("additive", &self.additive);
        w.finish()
    }
}

/// The types `Specimen.collection.collected[x]` allows.
#[cfg(feature = "clinical")]
#[derive(Debug, Clone, PartialEq)]
pub enum SpecimenCollectionCollected {
    /// `dateTime`
    DateTime(Primitive<String>),
    /// `Period`
    Period(Period),
}

#[cfg(feature = "clinical")]
impl Choice for SpecimenCollectionCollected {
    const TYPES: &'static [&'static str] = &["dateTime", "Period"];

    fn decode_as(code: &str, key: &str, o: &mut Obj<'_>, d: &mut Decoder) -> Option<Self> {
        match code {
            "dateTime" => o.prim(d, key, Kind::DateTime).map(Self::DateTime),
            "Period" => o.one(d, key).map(Self::Period),
            _ => None,
        }
    }

    fn encode_into(&self, base: &str, w: &mut ObjWriter) {
        match self {
            Self::DateTime(v) => w.prim_value(&choice_key(base, "dateTime"), v),
            Self::Period(v) => w.value(&choice_key(base, "Period"), v),
        }
    }
}

/// The types `Specimen.collection.fastingStatus[x]` allows.
#[cfg(feature = "clinical")]
#[derive(Debug, Clone, PartialEq)]
pub enum SpecimenCollectionFastingStatus {
    /// `CodeableConcept`
    CodeableConcept(CodeableConcept),
    /// `Duration`
    Duration(Duration),
}

#[cfg(feature = "clinical")]
impl Choice for SpecimenCollectionFastingStatus {
    const TYPES: &'static [&'static str] = &["CodeableConcept", "Duration"];

    fn decode_as(code: &str, key: &str, o: &mut Obj<'_>, d: &mut Decoder) -> Option<Self> {
        match code {
            "CodeableConcept" => o.one(d, key).map(Self::CodeableConcept),
            "Duration" => o.one(d, key).map(Self::Duration),
            _ => None,
        }
    }

    fn encode_into(&self, base: &str, w: &mut ObjWriter) {
        match self {
            Self::CodeableConcept(v) => w.value(&choice_key(base, "CodeableConcept"), v),
            Self::Duration(v) => w.value(&choice_key(base, "Duration"), v),
        }
    }
}

/// The types `Specimen.processing.time[x]` allows.
#[cfg(feature = "clinical")]
#[derive(Debug, Clone, PartialEq)]
pub enum SpecimenProcessingTime {
    /// `dateTime`
    DateTime(Primitive<String>),
    /// `Period`
    Period(Period),
}

#[cfg(feature = "clinical")]
impl Choice for SpecimenProcessingTime {
    const TYPES: &'static [&'static str] = &["dateTime", "Period"];

    fn decode_as(code: &str, key: &str, o: &mut Obj<'_>, d: &mut Decoder) -> Option<Self> {
        match code {
            "dateTime" => o.prim(d, key, Kind::DateTime).map(Self::DateTime),
            "Period" => o.one(d, key).map(Self::Period),
            _ => None,
        }
    }

    fn encode_into(&self, base: &str, w: &mut ObjWriter) {
        match self {
            Self::DateTime(v) => w.prim_value(&choice_key(base, "dateTime"), v),
            Self::Period(v) => w.value(&choice_key(base, "Period"), v),
        }
    }
}

/// The types `Specimen.container.additive[x]` allows.
#[cfg(feature = "clinical")]
#[derive(Debug, Clone, PartialEq)]
pub enum SpecimenContainerAdditive {
    /// `CodeableConcept`
    CodeableConcept(CodeableConcept),
    /// `Reference`
    Reference(Reference),
}

#[cfg(feature = "clinical")]
impl Choice for SpecimenContainerAdditive {
    const TYPES: &'static [&'static str] = &["CodeableConcept", "Reference"];

    fn decode_as(code: &str, key: &str, o: &mut Obj<'_>, d: &mut Decoder) -> Option<Self> {
        match code {
            "CodeableConcept" => o.one(d, key).map(Self::CodeableConcept),
            "Reference" => o.one(d, key).map(Self::Reference),
            _ => None,
        }
    }

    fn encode_into(&self, base: &str, w: &mut ObjWriter) {
        match self {
            Self::CodeableConcept(v) => w.value(&choice_key(base, "CodeableConcept"), v),
            Self::Reference(v) => w.value(&choice_key(base, "Reference"), v),
        }
    }
}