fg-mako 0.1.0

Fast SAM/BAM sorter (installs the `mako` binary).
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#!/bin/bash
#
# Pre-commit hook for mako.
#
# Runs cargo ci-fmt and cargo ci-lint before each commit.
# ci-test is skipped by default (slow) but can be enabled with:
#   MAKO_PRECOMMIT_TEST=1 git commit
#
# To bypass entirely (use sparingly):
#   git commit --no-verify

set -e

echo "Running pre-commit checks..."

if [[ ! -f "Cargo.toml" ]]; then
    echo "Error: Not in mako root directory"
    exit 1
fi

echo "==> cargo ci-fmt"
if ! cargo ci-fmt; then
    echo ""
    echo "Formatting check failed!"
    echo "Run 'cargo fmt' to fix formatting issues."
    exit 1
fi

echo "==> cargo ci-lint"
if ! cargo ci-lint; then
    echo ""
    echo "Lint check failed!"
    echo "Fix the clippy warnings above before committing."
    exit 1
fi

if [[ "${MAKO_PRECOMMIT_TEST:-0}" == "1" ]]; then
    echo "==> cargo ci-test"
    if ! cargo ci-test; then
        echo ""
        echo "Tests failed!"
        exit 1
    fi
else
    echo "==> Skipping ci-test (set MAKO_PRECOMMIT_TEST=1 to enable)"
fi

echo ""
echo "Pre-commit checks passed!"