fg-mako 0.1.0

Fast SAM/BAM sorter (installs the `mako` binary).
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name: Check and Test

on:
  push:
    branches:
      - main
  pull_request:

env:
  CARGO_TERM_COLOR: always
  CARGO_INCREMENTAL: 0
  SCCACHE_GHA_ENABLED: "true"
  RUSTC_WRAPPER: "sccache"

jobs:
  test:
    strategy:
      fail-fast: false
      matrix:
        os: [ubuntu-latest, macos-latest]
    runs-on: ${{ matrix.os }}
    steps:
      - name: Checkout code
        uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
      - name: Install Rust toolchain
        uses: dtolnay/rust-toolchain@29eef336d9b2848a0b548edc03f92a220660cdb8 # stable
      - name: Set up compilation cache (sccache)
        uses: mozilla-actions/sccache-action@9e7fa8a12102821edf02ca5dbea1acd0f89a2696 # v0.0.10
      - name: Run tests
        run: cargo ci-test

  lint:
    runs-on: ubuntu-latest
    steps:
      - name: Checkout code
        uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
      - name: Install Rust toolchain
        uses: dtolnay/rust-toolchain@29eef336d9b2848a0b548edc03f92a220660cdb8 # stable
        with:
          components: clippy
      - name: Set up compilation cache (sccache)
        uses: mozilla-actions/sccache-action@9e7fa8a12102821edf02ca5dbea1acd0f89a2696 # v0.0.10
      - name: Clippy check
        run: cargo ci-lint

  format:
    runs-on: ubuntu-latest
    steps:
      - name: Checkout code
        uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
      - name: Install Rust toolchain
        uses: dtolnay/rust-toolchain@29eef336d9b2848a0b548edc03f92a220660cdb8 # stable
        with:
          components: rustfmt
      - name: Rustfmt check
        run: cargo ci-fmt

  docs:
    runs-on: ubuntu-latest
    steps:
      - name: Checkout code
        uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
      - name: Install Rust toolchain
        uses: dtolnay/rust-toolchain@29eef336d9b2848a0b548edc03f92a220660cdb8 # stable
      - name: Set up compilation cache (sccache)
        uses: mozilla-actions/sccache-action@9e7fa8a12102821edf02ca5dbea1acd0f89a2696 # v0.0.10
      - name: Build rustdoc
        env:
          RUSTDOCFLAGS: "-D warnings"
        run: cargo doc --no-deps

  security:
    runs-on: ubuntu-latest
    steps:
      - name: Checkout code
        uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
      - name: Install cargo-audit
        uses: taiki-e/install-action@5f57d6cb7cd20b14a8a27f522884c4bc8a187458 # v2.75.19
        with:
          tool: cargo-audit
      - name: Audit dependencies for known vulnerabilities
        run: cargo audit

  publish-dry-run:
    runs-on: ubuntu-latest
    steps:
      - name: Checkout code
        uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
      - name: Install Rust toolchain
        uses: dtolnay/rust-toolchain@29eef336d9b2848a0b548edc03f92a220660cdb8 # stable
      - name: Set up compilation cache (sccache)
        uses: mozilla-actions/sccache-action@9e7fa8a12102821edf02ca5dbea1acd0f89a2696 # v0.0.10
      - name: cargo publish --dry-run
        # Catches manifest issues that only surface at publish time
        # (missing license, broken `include`, bad version constraints) before
        # they block a real release.
        run: cargo publish --dry-run --allow-dirty