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use crate::parameters::parameterset::MismatchParams;
pub static MISMATCH_HAIRPIN_EN37: MismatchParams = [
[ /* [cl][5] [3]: A C G T */
/* [AT][A] */ [ -70, -30, -50, 0],
/* [AT][C] */ [ -60, -20, 0, -30],
/* [AT][G] */ [ -60, 0, -40, -50],
/* [AT][T] */ [ 0, -30, -50, -40],
],
[ /* [cl][5] [3]: A C G T */
/* [TA][A] */ [ -60, -40, -50, 0],
/* [TA][C] */ [ -50, -20, 0, -50],
/* [TA][G] */ [ -60, 0, -40, -50],
/* [TA][T] */ [ 0, -30, -60, -30],
],
[ /* [cl][5] [3]: A C G T */
/* [CG][A] */ [ -100, -80, -90, 0],
/* [CG][C] */ [ -80, -50, 0, -70],
/* [CG][G] */ [ -100, 0, -90, -100],
/* [CG][T] */ [ 0, -60, -90, -90],
],
[ /* [cl][5] [3]: A C G T */
/* [GC][A] */ [ -100, -70, -80, 0],
/* [GC][C] */ [ -100, -60, 0, -70],
/* [GC][G] */ [ -100, 0, -100, -80],
/* [GC][T] */ [ 0, -60, -90, -90],
],
[ /* [cl][5] [3]: A C G T */
/* [GT][A] */ [ -50, -20, -50, -60],
/* [GT][C] */ [ -20, -20, -90, -20],
/* [GT][G] */ [ -50, -90, -50, -50],
/* [GT][T] */ [ -50, -20, -50, -20],
],
[ /* [cl][5] [3]: A C G T */
/* [TG][A] */ [ -50, -20, -50, -50],
/* [TG][C] */ [ -20, -20, -80, -20],
/* [TG][G] */ [ -50, -100, -50, -50],
/* [TG][T] */ [ -50, -20, -50, -20],
],
];
pub static MISMATCH_HAIRPIN_ENTH: MismatchParams = [
[ /* [cl][5] [3]: A C G T */
/* [AT][A] */ [ 400, 520, 470, 430],
/* [AT][C] */ [ 400, 520, 470, 430],
/* [AT][G] */ [ 400, 520, 470, 430],
/* [AT][T] */ [ 400, 520, 470, 430],
],
[ /* [cl][5] [3]: A C G T */
/* [TA][A] */ [ 230, 170, 70, -580],
/* [TA][C] */ [ 230, 170, 70, -580],
/* [TA][G] */ [ 230, 170, 70, -580],
/* [TA][T] */ [ 230, 170, 70, -580],
],
[ /* [cl][5] [3]: A C G T */
/* [CG][A] */ [ -460, -420, -470, -500],
/* [CG][C] */ [ -460, -420, -470, -500],
/* [CG][G] */ [ -460, -420, -470, -500],
/* [CG][T] */ [ -460, -420, -470, -500],
],
[ /* [cl][5] [3]: A C G T */
/* [GC][A] */ [ -620, -330, -510, -90],
/* [GC][C] */ [ -620, -330, -510, -90],
/* [GC][G] */ [ -620, -330, -510, -90],
/* [GC][T] */ [ -620, -330, -510, -90],
],
[ /* [cl][5] [3]: A C G T */
/* [GT][A] */ [ -300, -10, -190, 230],
/* [GT][C] */ [ -300, -10, -190, 230],
/* [GT][G] */ [ -300, -10, -190, 230],
/* [GT][T] */ [ -300, -10, -190, 230],
],
[ /* [cl][5] [3]: A C G T */
/* [TG][A] */ [ 230, 170, 70, -580],
/* [TG][C] */ [ 230, 170, 70, -580],
/* [TG][G] */ [ 230, 170, 70, -580],
/* [TG][T] */ [ 230, 170, 70, -580],
],
];
pub static MISMATCH_INTERIOR_EN37: MismatchParams = [
[ /* [cl][5] [3]: A C G T */
/* [AT][A] */ [ -70, -30, -50, 0],
/* [AT][C] */ [ -60, -20, 0, -30],
/* [AT][G] */ [ -60, 0, -40, -50],
/* [AT][T] */ [ 0, -30, -50, -40],
],
[ /* [cl][5] [3]: A C G T */
/* [TA][A] */ [ -60, -40, -50, 0],
/* [TA][C] */ [ -50, -20, 0, -50],
/* [TA][G] */ [ -60, 0, -40, -50],
/* [TA][T] */ [ 0, -30, -60, -30],
],
[ /* [cl][5] [3]: A C G T */
/* [CG][A] */ [ -100, -80, -90, 0],
/* [CG][C] */ [ -80, -50, 0, -70],
/* [CG][G] */ [ -100, 0, -90, -100],
/* [CG][T] */ [ 0, -60, -90, -90],
],
[ /* [cl][5] [3]: A C G T */
/* [GC][A] */ [ -100, -70, -80, 0],
/* [GC][C] */ [ -100, -60, 0, -70],
/* [GC][G] */ [ -100, 0, -100, -80],
/* [GC][T] */ [ 0, -60, -90, -90],
],
[ /* [cl][5] [3]: A C G T */
/* [GT][A] */ [ -50, -20, -50, -60],
/* [GT][C] */ [ -20, -20, -90, -20],
/* [GT][G] */ [ -50, -90, -50, -50],
/* [GT][T] */ [ -50, -20, -50, -20],
],
[ /* [cl][5] [3]: A C G T */
/* [TG][A] */ [ -50, -20, -50, -50],
/* [TG][C] */ [ -20, -20, -80, -20],
/* [TG][G] */ [ -50, -100, -50, -50],
/* [TG][T] */ [ -50, -20, -50, -20],
],
];
pub static MISMATCH_INTERIOR_ENTH: MismatchParams = [
[ /* [cl][5] [3]: A C G T */
/* [AT][A] */ [ 400, 520, 470, 430],
/* [AT][C] */ [ 400, 520, 470, 430],
/* [AT][G] */ [ 400, 520, 470, 430],
/* [AT][T] */ [ 400, 520, 470, 430],
],
[ /* [cl][5] [3]: A C G T */
/* [TA][A] */ [ 230, 170, 70, -580],
/* [TA][C] */ [ 230, 170, 70, -580],
/* [TA][G] */ [ 230, 170, 70, -580],
/* [TA][T] */ [ 230, 170, 70, -580],
],
[ /* [cl][5] [3]: A C G T */
/* [CG][A] */ [ -460, -420, -470, -500],
/* [CG][C] */ [ -460, -420, -470, -500],
/* [CG][G] */ [ -460, -420, -470, -500],
/* [CG][T] */ [ -460, -420, -470, -500],
],
[ /* [cl][5] [3]: A C G T */
/* [GC][A] */ [ -620, -330, -510, -90],
/* [GC][C] */ [ -620, -330, -510, -90],
/* [GC][G] */ [ -620, -330, -510, -90],
/* [GC][T] */ [ -620, -330, -510, -90],
],
[ /* [cl][5] [3]: A C G T */
/* [GT][A] */ [ -300, -10, -190, 230],
/* [GT][C] */ [ -300, -10, -190, 230],
/* [GT][G] */ [ -300, -10, -190, 230],
/* [GT][T] */ [ -300, -10, -190, 230],
],
[ /* [cl][5] [3]: A C G T */
/* [TG][A] */ [ 230, 170, 70, -580],
/* [TG][C] */ [ 230, 170, 70, -580],
/* [TG][G] */ [ 230, 170, 70, -580],
/* [TG][T] */ [ 230, 170, 70, -580],
],
];
pub static MISMATCH_INTERIOR_1N_EN37: MismatchParams = [
[ /* [cl][5] [3]: A C G T */
/* [AT][A] */ [ 0, 0, 0, 0],
/* [AT][C] */ [ 0, 0, 0, 0],
/* [AT][G] */ [ 0, 0, 0, 0],
/* [AT][T] */ [ 0, 0, 0, 0],
],
[ /* [cl][5] [3]: A C G T */
/* [TA][A] */ [ 0, 0, 0, 0],
/* [TA][C] */ [ 0, 0, 0, 0],
/* [TA][G] */ [ 0, 0, 0, 0],
/* [TA][T] */ [ 0, 0, 0, 0],
],
[ /* [cl][5] [3]: A C G T */
/* [CG][A] */ [ 0, 0, 0, 0],
/* [CG][C] */ [ 0, 0, 0, 0],
/* [CG][G] */ [ 0, 0, 0, 0],
/* [CG][T] */ [ 0, 0, 0, 0],
],
[ /* [cl][5] [3]: A C G T */
/* [GC][A] */ [ 0, 0, 0, 0],
/* [GC][C] */ [ 0, 0, 0, 0],
/* [GC][G] */ [ 0, 0, 0, 0],
/* [GC][T] */ [ 0, 0, 0, 0],
],
[ /* [cl][5] [3]: A C G T */
/* [GT][A] */ [ 0, 0, 0, 0],
/* [GT][C] */ [ 0, 0, 0, 0],
/* [GT][G] */ [ 0, 0, 0, 0],
/* [GT][T] */ [ 0, 0, 0, 0],
],
[ /* [cl][5] [3]: A C G T */
/* [TG][A] */ [ 0, 0, 0, 0],
/* [TG][C] */ [ 0, 0, 0, 0],
/* [TG][G] */ [ 0, 0, 0, 0],
/* [TG][T] */ [ 0, 0, 0, 0],
],
];
pub static MISMATCH_INTERIOR_1N_ENTH: MismatchParams = [
[ /* [cl][5] [3]: A C G T */
/* [AT][A] */ [ 320, 320, 320, 320],
/* [AT][C] */ [ 320, 320, 320, 320],
/* [AT][G] */ [ 320, 320, 320, 320],
/* [AT][T] */ [ 320, 320, 320, 320],
],
[ /* [cl][5] [3]: A C G T */
/* [TA][A] */ [ 320, 320, 320, 320],
/* [TA][C] */ [ 320, 320, 320, 320],
/* [TA][G] */ [ 320, 320, 320, 320],
/* [TA][T] */ [ 320, 320, 320, 320],
],
[ /* [cl][5] [3]: A C G T */
/* [CG][A] */ [ 0, 0, 0, 0],
/* [CG][C] */ [ 0, 0, 0, 0],
/* [CG][G] */ [ 0, 0, 0, 0],
/* [CG][T] */ [ 0, 0, 0, 0],
],
[ /* [cl][5] [3]: A C G T */
/* [GC][A] */ [ 0, 0, 0, 0],
/* [GC][C] */ [ 0, 0, 0, 0],
/* [GC][G] */ [ 0, 0, 0, 0],
/* [GC][T] */ [ 0, 0, 0, 0],
],
[ /* [cl][5] [3]: A C G T */
/* [GT][A] */ [ 320, 320, 320, 320],
/* [GT][C] */ [ 320, 320, 320, 320],
/* [GT][G] */ [ 320, 320, 320, 320],
/* [GT][T] */ [ 320, 320, 320, 320],
],
[ /* [cl][5] [3]: A C G T */
/* [TG][A] */ [ 320, 320, 320, 320],
/* [TG][C] */ [ 320, 320, 320, 320],
/* [TG][G] */ [ 320, 320, 320, 320],
/* [TG][T] */ [ 320, 320, 320, 320],
],
];
pub static MISMATCH_INTERIOR_23_EN37: MismatchParams = [
[ /* [cl][5] [3]: A C G T */
/* [AT][A] */ [ -70, -30, -50, 0],
/* [AT][C] */ [ -60, -20, 0, -30],
/* [AT][G] */ [ -60, 0, -40, -50],
/* [AT][T] */ [ 0, -30, -50, -40],
],
[ /* [cl][5] [3]: A C G T */
/* [TA][A] */ [ -60, -40, -50, 0],
/* [TA][C] */ [ -50, -20, 0, -50],
/* [TA][G] */ [ -60, 0, -40, -50],
/* [TA][T] */ [ 0, -30, -60, -30],
],
[ /* [cl][5] [3]: A C G T */
/* [CG][A] */ [ -100, -80, -90, 0],
/* [CG][C] */ [ -80, -50, 0, -70],
/* [CG][G] */ [ -100, 0, -90, -100],
/* [CG][T] */ [ 0, -60, -90, -90],
],
[ /* [cl][5] [3]: A C G T */
/* [GC][A] */ [ -100, -70, -80, 0],
/* [GC][C] */ [ -100, -60, 0, -70],
/* [GC][G] */ [ -100, 0, -100, -80],
/* [GC][T] */ [ 0, -60, -90, -90],
],
[ /* [cl][5] [3]: A C G T */
/* [GT][A] */ [ -50, -20, -50, -60],
/* [GT][C] */ [ -20, -20, -90, -20],
/* [GT][G] */ [ -50, -90, -50, -50],
/* [GT][T] */ [ -50, -20, -50, -20],
],
[ /* [cl][5] [3]: A C G T */
/* [TG][A] */ [ -50, -20, -50, -50],
/* [TG][C] */ [ -20, -20, -80, -20],
/* [TG][G] */ [ -50, -100, -50, -50],
/* [TG][T] */ [ -50, -20, -50, -20],
],
];
pub static MISMATCH_INTERIOR_23_ENTH: MismatchParams = [
[ /* [cl][5] [3]: A C G T */
/* [AT][A] */ [ 400, 520, 470, 430],
/* [AT][C] */ [ 400, 520, 470, 430],
/* [AT][G] */ [ 400, 520, 470, 430],
/* [AT][T] */ [ 400, 520, 470, 430],
],
[ /* [cl][5] [3]: A C G T */
/* [TA][A] */ [ 230, 170, 70, -580],
/* [TA][C] */ [ 230, 170, 70, -580],
/* [TA][G] */ [ 230, 170, 70, -580],
/* [TA][T] */ [ 230, 170, 70, -580],
],
[ /* [cl][5] [3]: A C G T */
/* [CG][A] */ [ -460, -420, -470, -500],
/* [CG][C] */ [ -460, -420, -470, -500],
/* [CG][G] */ [ -460, -420, -470, -500],
/* [CG][T] */ [ -460, -420, -470, -500],
],
[ /* [cl][5] [3]: A C G T */
/* [GC][A] */ [ -620, -330, -510, -90],
/* [GC][C] */ [ -620, -330, -510, -90],
/* [GC][G] */ [ -620, -330, -510, -90],
/* [GC][T] */ [ -620, -330, -510, -90],
],
[ /* [cl][5] [3]: A C G T */
/* [GT][A] */ [ -300, -10, -190, 230],
/* [GT][C] */ [ -300, -10, -190, 230],
/* [GT][G] */ [ -300, -10, -190, 230],
/* [GT][T] */ [ -300, -10, -190, 230],
],
[ /* [cl][5] [3]: A C G T */
/* [TG][A] */ [ 230, 170, 70, -580],
/* [TG][C] */ [ 230, 170, 70, -580],
/* [TG][G] */ [ 230, 170, 70, -580],
/* [TG][T] */ [ 230, 170, 70, -580],
],
];
pub static MISMATCH_MULTI_EN37: MismatchParams = [
[ /* [cl][5] [3]: A C G T */
/* [AT][A] */ [ -60, -50, -60, 0],
/* [AT][C] */ [ -40, -20, 0, -30],
/* [AT][G] */ [ -50, 0, -40, -60],
/* [AT][T] */ [ 0, -50, -50, -30],
],
[ /* [cl][5] [3]: A C G T */
/* [TA][A] */ [ -70, -60, -60, 0],
/* [TA][C] */ [ -30, -20, 0, -30],
/* [TA][G] */ [ -50, 0, -40, -50],
/* [TA][T] */ [ 0, -30, -50, -40],
],
[ /* [cl][5] [3]: A C G T */
/* [CG][A] */ [ -100, -100, -100, 0],
/* [CG][C] */ [ -70, -60, 0, -60],
/* [CG][G] */ [ -80, 0, -100, -90],
/* [CG][T] */ [ 0, -70, -80, -90],
],
[ /* [cl][5] [3]: A C G T */
/* [GC][A] */ [ -100, -80, -100, 0],
/* [GC][C] */ [ -80, -50, 0, -60],
/* [GC][G] */ [ -90, 0, -90, -90],
/* [GC][T] */ [ 0, -70, -100, -90],
],
[ /* [cl][5] [3]: A C G T */
/* [GT][A] */ [ -50, -20, -50, -50],
/* [GT][C] */ [ -20, -20, -100, -20],
/* [GT][G] */ [ -50, -80, -50, -50],
/* [GT][T] */ [ -50, -20, -50, -20],
],
[ /* [cl][5] [3]: A C G T */
/* [TG][A] */ [ -50, -20, -50, -50],
/* [TG][C] */ [ -20, -20, -90, -20],
/* [TG][G] */ [ -50, -90, -50, -50],
/* [TG][T] */ [ -60, -20, -50, -20],
],
];
pub static MISMATCH_MULTI_ENTH: MismatchParams = [
[ /* [cl][5] [3]: A C G T */
/* [AT][A] */ [ 230, 230, 230, 230],
/* [AT][C] */ [ 170, 170, 170, 170],
/* [AT][G] */ [ 70, 70, 70, 70],
/* [AT][T] */ [ -580, -580, -580, -580],
],
[ /* [cl][5] [3]: A C G T */
/* [TA][A] */ [ 400, 400, 400, 400],
/* [TA][C] */ [ 520, 520, 520, 520],
/* [TA][G] */ [ 470, 470, 470, 470],
/* [TA][T] */ [ 430, 430, 430, 430],
],
[ /* [cl][5] [3]: A C G T */
/* [CG][A] */ [ -620, -620, -620, -620],
/* [CG][C] */ [ -330, -330, -330, -330],
/* [CG][G] */ [ -510, -510, -510, -510],
/* [CG][T] */ [ -90, -90, -90, -90],
],
[ /* [cl][5] [3]: A C G T */
/* [GC][A] */ [ -460, -460, -460, -460],
/* [GC][C] */ [ -420, -420, -420, -420],
/* [GC][G] */ [ -470, -470, -470, -470],
/* [GC][T] */ [ -500, -500, -500, -500],
],
[ /* [cl][5] [3]: A C G T */
/* [GT][A] */ [ 230, 230, 230, 230],
/* [GT][C] */ [ 170, 170, 170, 170],
/* [GT][G] */ [ 70, 70, 70, 70],
/* [GT][T] */ [ -580, -580, -580, -580],
],
[ /* [cl][5] [3]: A C G T */
/* [TG][A] */ [ -300, -300, -300, -300],
/* [TG][C] */ [ -10, -10, -10, -10],
/* [TG][G] */ [ -190, -190, -190, -190],
/* [TG][T] */ [ 230, 230, 230, 230],
],
];
pub static MISMATCH_EXTERIOR_EN37: MismatchParams = [
[ /* [cl][5] [3]: A C G T */
/* [AT][A] */ [ -60, -50, -60, 0],
/* [AT][C] */ [ -40, -20, 0, -30],
/* [AT][G] */ [ -50, 0, -40, -60],
/* [AT][T] */ [ 0, -50, -50, -30],
],
[ /* [cl][5] [3]: A C G T */
/* [TA][A] */ [ -70, -60, -60, 0],
/* [TA][C] */ [ -30, -20, 0, -30],
/* [TA][G] */ [ -50, 0, -40, -50],
/* [TA][T] */ [ 0, -30, -50, -40],
],
[ /* [cl][5] [3]: A C G T */
/* [CG][A] */ [ -100, -100, -100, 0],
/* [CG][C] */ [ -70, -60, 0, -60],
/* [CG][G] */ [ -80, 0, -100, -90],
/* [CG][T] */ [ 0, -70, -80, -90],
],
[ /* [cl][5] [3]: A C G T */
/* [GC][A] */ [ -100, -80, -100, 0],
/* [GC][C] */ [ -80, -50, 0, -60],
/* [GC][G] */ [ -90, 0, -90, -90],
/* [GC][T] */ [ 0, -70, -100, -90],
],
[ /* [cl][5] [3]: A C G T */
/* [GT][A] */ [ -50, -20, -50, -50],
/* [GT][C] */ [ -20, -20, -100, -20],
/* [GT][G] */ [ -50, -80, -50, -50],
/* [GT][T] */ [ -50, -20, -50, -20],
],
[ /* [cl][5] [3]: A C G T */
/* [TG][A] */ [ -50, -20, -50, -50],
/* [TG][C] */ [ -20, -20, -90, -20],
/* [TG][G] */ [ -50, -90, -50, -50],
/* [TG][T] */ [ -60, -20, -50, -20],
],
];
pub static MISMATCH_EXTERIOR_ENTH: MismatchParams = [
[ /* [cl][5] [3]: A C G T */
/* [AT][A] */ [ -90, -90, -90, -90],
/* [AT][C] */ [ -60, -60, -60, -60],
/* [AT][G] */ [ -250, -250, -250, -250],
/* [AT][T] */ [ -900, -900, -900, -900],
],
[ /* [cl][5] [3]: A C G T */
/* [TA][A] */ [ 80, 80, 80, 80],
/* [TA][C] */ [ 200, 200, 200, 200],
/* [TA][G] */ [ 150, 150, 150, 150],
/* [TA][T] */ [ 110, 110, 110, 110],
],
[ /* [cl][5] [3]: A C G T */
/* [CG][A] */ [ -620, -620, -620, -620],
/* [CG][C] */ [ -330, -330, -330, -330],
/* [CG][G] */ [ -510, -510, -510, -510],
/* [CG][T] */ [ -90, -90, -90, -90],
],
[ /* [cl][5] [3]: A C G T */
/* [GC][A] */ [ -460, -460, -460, -460],
/* [GC][C] */ [ -420, -420, -420, -420],
/* [GC][G] */ [ -470, -470, -470, -470],
/* [GC][T] */ [ -500, -500, -500, -500],
],
[ /* [cl][5] [3]: A C G T */
/* [GT][A] */ [ -90, -90, -90, -90],
/* [GT][C] */ [ -60, -60, -60, -60],
/* [GT][G] */ [ -250, -250, -250, -250],
/* [GT][T] */ [ -900, -900, -900, -900],
],
[ /* [cl][5] [3]: A C G T */
/* [TG][A] */ [ -620, -620, -620, -620],
/* [TG][C] */ [ -330, -330, -330, -330],
/* [TG][G] */ [ -510, -510, -510, -510],
/* [TG][T] */ [ -90, -90, -90, -90],
],
];