[package]
edition = "2021"
name = "fastx"
version = "0.6.1"
authors = ["Andreas Hauser <Andreas.Hauser@LMU.de>"]
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "FastX reads Fasta and FastQ files with little overhead."
readme = "README.md"
keywords = [
"sequencing",
"genome",
"Fasta",
"FastQ",
"bioinformatics",
]
license = "CC-BY-SA-4.0"
repository = "https://github.com/ahcm/fastx"
[features]
default = [
"rust-backend",
"url",
]
rust-backend = ["flate2/rust_backend"]
url = ["dep:ureq"]
zlib = ["flate2/zlib"]
zlib-ng = ["flate2/zlib-ng"]
zlib-ng-compat = ["flate2/zlib-ng-compat"]
[lib]
name = "fastx"
path = "src/lib.rs"
[[example]]
name = "fasta_cat"
path = "examples/fasta_cat.rs"
[[example]]
name = "fasta_count"
path = "examples/fasta_count.rs"
[[example]]
name = "fasta_count_indexed_chromosome"
path = "examples/fasta_count_indexed_chromosome.rs"
[[example]]
name = "fasta_fetch_remote_indexed"
path = "examples/fasta_fetch_remote_indexed.rs"
[[example]]
name = "fasta_iterator"
path = "examples/fasta_iterator.rs"
[[example]]
name = "fastq_cat"
path = "examples/fastq_cat.rs"
[[example]]
name = "fastq_sum"
path = "examples/fastq_sum.rs"
[[example]]
name = "fastq_sum_iterator"
path = "examples/fastq_sum_iterator.rs"
[[example]]
name = "fastq_sum_iterator_reuse"
path = "examples/fastq_sum_iterator_reuse.rs"
[[example]]
name = "fastx_cat"
path = "examples/fastx_cat.rs"
[[example]]
name = "fastx_count"
path = "examples/fastx_count.rs"
[[example]]
name = "fastx_for_each"
path = "examples/fastx_for_each.rs"
[[bench]]
name = "bench_comparison"
path = "benches/bench_comparison.rs"
harness = false
[dependencies.flate2]
version = "^1.1"
default-features = false
[dependencies.memchr]
version = "^2.7"
[dependencies.ureq]
version = "^3"
features = [
"socks-proxy",
"rustls",
]
optional = true
default-features = false
[dev-dependencies.criterion]
version = "0.5"
[dev-dependencies.needletail]
version = "0.5"
default-features = false
[dev-dependencies.rand]
version = "0.8"