Struct BaseCounts 

pub struct BaseCounts {
    pub a: u64,
    pub c: u64,
    pub g: u64,
    pub t: u64,
    pub n: u64,
    pub other: u64,
}

Per-base counts of a nucleotide sequence, case-insensitive.

Fields

a: u64

Adenine.

c: u64

Cytosine.

g: u64

Guanine.

t: u64

Thymine, or uracil in RNA.

n: u64

N and other IUPAC ambiguity codes.

other: u64

Anything that is not a nucleotide code (gaps, *, …).

Implementations

impl BaseCounts

pub fn of(seq: &[u8]) -> BaseCounts

Count the bases of seq.

pub fn total(&self) -> u64

Total number of counted bytes.

pub fn acgt(&self) -> u64

Unambiguous A/C/G/T bases.

pub fn gc_content(&self) -> Option<f64>

GC fraction over unambiguous bases, or None when there are none.

pub fn merge(&mut self, other: &BaseCounts)

Add another set of counts.

Trait Implementations

impl Clone for BaseCounts

fn clone(&self) -> BaseCounts

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Copy for BaseCounts

impl Debug for BaseCounts

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for BaseCounts

fn default() -> BaseCounts

Returns the “default value” for a type.

impl Eq for BaseCounts

impl PartialEq for BaseCounts

fn eq(&self, other: &BaseCounts) -> bool

Equality operator ==.

fn ne(&self, other: &Rhs) -> bool

Inequality operator !=.

impl StructuralPartialEq for BaseCounts