fastx-io 0.3.0

Fast, streaming FASTA/FASTQ reader and writer for bioinformatics pipelines
Documentation 
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
rust-version = "1.74"
name = "fastx-io"
version = "0.3.0"
build = false
exclude = ["/.github"]
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Fast, streaming FASTA/FASTQ reader and writer for bioinformatics pipelines"
documentation = "https://docs.rs/fastx-io"
readme = "README.md"
keywords = [
    "fasta",
    "fastq",
    "bioinformatics",
    "sequence",
    "genomics",
]
categories = [
    "science",
    "parser-implementations",
]
license = "MIT OR Apache-2.0"
repository = "https://github.com/ScioFuturum/fastx"

[package.metadata.docs.rs]
all-features = true

[features]
default = ["gzip"]
full = [
    "gzip",
    "parallel",
    "zstd",
    "libdeflate",
]
gzip = ["flate2"]
libdeflate = [
    "gzip",
    "dep:libdeflater",
]
parallel = ["rayon"]
zstd = ["dep:zstd"]

[lib]
name = "fastx"
path = "src/lib.rs"

[[bin]]
name = "fastx"
path = "src/bin/fastx.rs"

[[example]]
name = "gc_content"
path = "examples/gc_content.rs"

[[example]]
name = "kmer_count"
path = "examples/kmer_count.rs"

[[example]]
name = "parallel_stats"
path = "examples/parallel_stats.rs"

[[example]]
name = "trim_and_convert"
path = "examples/trim_and_convert.rs"

[[test]]
name = "cli"
path = "tests/cli.rs"

[[test]]
name = "integration"
path = "tests/integration.rs"

[[test]]
name = "property"
path = "tests/property.rs"

[[bench]]
name = "throughput"
path = "benches/throughput.rs"
harness = false

[dependencies.flate2]
version = "1.0"
optional = true

[dependencies.libdeflater]
version = "1.24"
optional = true

[dependencies.memchr]
version = "2.7"

[dependencies.rayon]
version = "1.10"
optional = true

[dependencies.zstd]
version = "0.13"
optional = true

[dev-dependencies.criterion]
version = "0.5"
features = ["cargo_bench_support"]
default-features = false

[dev-dependencies.proptest]
version = "1"

[profile.release]
opt-level = 3
lto = "thin"
codegen-units = 1