format-version: 1.2
data-version: 4.1.25
date: 06:04:2019 14:50
saved-by: Gerhard Mayer
auto-generated-by: OBO-Edit 2.3.1
default-namespace: MS
namespace-id-rule: * MS:$sequence(7,0,9999999)$
namespace-id-rule: * PEFF:$sequence(7,0,9999999)$
remark: coverage: Mass spectrometer output files and spectra interpretation
remark: creator: Andreas Bertsch <bertsch <-at-> informatik.uni-tuebingen.de>
remark: creator: Eric Deutsch <edeutsch <-at-> systemsbiology.org>
remark: creator: Fredrik Levander <fredrik.levander <-at-> immun.lth.se>
remark: creator: Gerhard Mayer <mayerg97 <-at-> rub.de>
remark: creator: Marius Kallhardt <Marius.Kallhardt <-at-> bdal.de>
remark: creator: Matt Chambers <matt.chambers <-at-> vanderbilt.edu>
remark: creator: Pierre-Alain Binz <pierre-alain.binz <-at-> chuv.ch>
remark: For any queries contact psidev-ms-vocab@lists.sourceforge.net
remark: namespace: MS
remark: namespace: PEFF
remark: publisher: HUPO Proteomics Standards Initiative Mass Spectrometry Standards Working Group and HUPO Proteomics Standards Initiative Proteomics Informatics Working Group
remark: This work is licensed under the Creative Commons Attribution 4.0 International (CC BY 4.0) license.
remark: To view a copy of this license, visit https://creativecommons.org/licenses/by/4.0/ or send a letter to Creative Commons, 444 Castro Street, Suite 900, Mountain View, California, 94041, USA.
remark: URL: https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo
remark: When appropriate the definition and synonyms of a term are reported exactly as in the chapter 12 of IUPAC orange book. See http://www.iupac.org/projects/2003/2003-056-2-500.html and http://mass-spec.lsu.edu/msterms/index.php/Main_Page
import: http://ontologies.berkeleybop.org/pato.obo
import: http://ontologies.berkeleybop.org/uo.obo
ontology: ms
owl-axioms: Prefix(owl:=<http://www.w3.org/2002/07/owl#>)\nPrefix(rdf:=<http://www.w3.org/1999/02/22-rdf-syntax-ns#>)\nPrefix(xml:=<http://www.w3.org/XML/1998/namespace>)\nPrefix(xsd:=<http://www.w3.org/2001/XMLSchema#>)\nPrefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)\n\n\nOntology(\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000115>))\nDeclaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#hasDbXref>))\nDeclaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace>))\nDeclaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#id>))\n\n\nAnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> \"PSI:MS\"^^xsd:string) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/MS_1000393> \"The formation of gas-phase ions by the interaction of a pulsed laser with a solid or liquid material.\"^^xsd:string)\nAnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/MS_1000393> \"MS\"^^xsd:string)\nAnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/MS_1000393> \"MS:1000393\"^^xsd:string)\nAnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MS_1000393> \"laser desorption ionization\"^^xsd:string)\n)
[Term]
id: MS:0000000
name: Proteomics Standards Initiative Mass Spectrometry Vocabularies
def: "Proteomics Standards Initiative Mass Spectrometry Vocabularies." [PSI:MS]
[Term]
id: MS:1000001
name: sample number
def: "A reference number relevant to the sample under study." [PSI:MS]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: MS:1000548 ! sample attribute
[Term]
id: MS:1000002
name: sample name
def: "A reference string relevant to the sample under study." [PSI:MS]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: MS:1000548 ! sample attribute
[Term]
id: MS:1000003
name: sample state
def: "The chemical phase of a pure sample, or the state of a mixed sample." [PSI:MS]
is_a: MS:1000548 ! sample attribute
[Term]
id: MS:1000004
name: sample mass
def: "Total mass of sample used." [PSI:MS]
xref: value-type:xsd\:float "The allowed value-type for this CV term."
is_a: MS:1000548 ! sample attribute
relationship: has_units UO:0000021
[Term]
id: MS:1000005
name: sample volume
def: "Total volume of solution used." [PSI:MS]
xref: value-type:xsd\:float "The allowed value-type for this CV term."
is_a: MS:1000548 ! sample attribute
relationship: has_units UO:0000098
[Term]
id: MS:1000006
name: sample concentration
def: "Concentration of sample in picomol/ul, femtomol/ul or attomol/ul solution used." [PSI:MS]
xref: value-type:xsd\:float "The allowed value-type for this CV term."
is_a: MS:1000548 ! sample attribute
relationship: has_units UO:0000175
[Term]
id: MS:1000007
name: inlet type
def: "The nature of the sample inlet." [PSI:MS]
relationship: part_of MS:1000458 ! source
[Term]
id: MS:1000008
name: ionization type
def: "The method by which gas phase ions are generated from the sample." [PSI:MS]
relationship: part_of MS:1000458 ! source
[Term]
id: MS:1000009
name: ionization mode
def: "OBSOLETE Whether positive or negative ions are selected for analysis by the spectrometer." [PSI:MS]
comment: This term was made obsolete because it was replaced by scan polarity (MS:1000465).
is_obsolete: true
[Term]
id: MS:1000010
name: analyzer type
def: "OBSOLETE The common name of the particular analyzer stage being described. Synonym of mass analyzer, should be obsoleted." [PSI:MS]
comment: This former purgatory term was made obsolete.
is_obsolete: true
[Term]
id: PEFF:0000001
name: PEFF CV term
def: "PSI Extended FASTA Format controlled vocabulary term." [PSI:PEFF]
relationship: part_of MS:0000000 ! Proteomics Standards Initiative Mass Spectrometry Vocabularies
[Term]
id: PEFF:0000002
name: PEFF file header section term
def: "CV term that may appear in a PEFF file header section." [PSI:PEFF]
is_a: PEFF:0000001 ! PEFF CV term
[Term]
id: PEFF:0000003
name: PEFF file sequence entry term
def: "CV term that may appear in a description line of a PEFF file individual sequence entry." [PSI:PEFF]
is_a: PEFF:0000001 ! PEFF CV term
[Term]
id: PEFF:0000008
name: DbName
def: "PEFF keyword for the sequence database name." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000002 ! PEFF file header section term
[Term]
id: PEFF:0000009
name: Prefix
def: "PEFF keyword for the sequence database prefix." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000002 ! PEFF file header section term
[Term]
id: PEFF:0000010
name: DbDescription
def: "PEFF keyword for the sequence database short description." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000002 ! PEFF file header section term
[Term]
id: PEFF:0000011
name: Decoy
def: "PEFF keyword for the specifying whether the sequence database is a decoy database." [PSI:PEFF]
xref: value-type:xsd\:boolean "The allowed value-type for this CV term."
is_a: PEFF:0000002 ! PEFF file header section term
[Term]
id: PEFF:0000012
name: DbSource
def: "PEFF keyword for the source of the database file." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000002 ! PEFF file header section term
[Term]
id: PEFF:0000013
name: DbVersion
def: "PEFF keyword for the database version (release date) according to database provider." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000002 ! PEFF file header section term
[Term]
id: PEFF:0000014
name: DbDate
def: "OBSOLETE PEFF keyword for the database date (release or file date of the source) according to database provider." [PSI:PEFF]
comment: This term was obsoleted.
is_a: PEFF:0000002 ! PEFF file header section term
is_obsolete: true
[Term]
id: PEFF:0000015
name: NumberOfEntries
def: "PEFF keyword for the sumber of sequence entries in the database." [PSI:PEFF]
xref: value-type:xsd\:integer "The allowed value-type for this CV term."
is_a: PEFF:0000002 ! PEFF file header section term
[Term]
id: PEFF:0000016
name: Conversion
def: "PEFF keyword for the description of the conversion from original format to this current one." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000002 ! PEFF file header section term
[Term]
id: PEFF:0000017
name: SequenceType
def: "PEFF keyword for the molecular type of the sequences." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000002 ! PEFF file header section term
relationship: has_regexp PEFF:1002002 ! regular expression for PEFF molecular sequence type
[Term]
id: PEFF:0000018
name: SpecificKey
def: "PEFF keyword for database specific keywords not included in the current controlled vocabulary." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000002 ! PEFF file header section term
[Term]
id: PEFF:0000019
name: SpecificValue
def: "PEFF keyword for the specific values for a custom key." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000002 ! PEFF file header section term
[Term]
id: PEFF:0000020
name: DatabaseDescription
def: "PEFF keyword for the short description of the PEFF file." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000002 ! PEFF file header section term
[Term]
id: PEFF:0000021
name: GeneralComment
def: "PEFF keyword for a general comment." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000002 ! PEFF file header section term
[Term]
id: PEFF:0000022
name: ProteoformDb
def: "PEFF keyword that when set to 'true' indicates that the database contains complete proteoforms." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000002 ! PEFF file header section term
[Term]
id: PEFF:0000023
name: OptionalTagDef
def: "PEFF keyword for the short tag (abbreviation) and longer definition used to annotate a sequence annotation (such as variant or modification) in the OptionalTag location." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000002 ! PEFF file header section term
[Term]
id: PEFF:0000024
name: HasAnnotationIdentifiers
def: "PEFF keyword that when set to 'true' indicates that entries in the database have identifiers for each annotation." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000002 ! PEFF file header section term
[Term]
id: PEFF:0001001
name: DbUniqueId
def: "OBSOLETE Sequence database unique identifier." [PSI:PEFF]
comment: This term was made obsolete because decided in Heidelberg 2018-04 that this is redundant.
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000003 ! PEFF file sequence entry term
is_obsolete: true
[Term]
id: PEFF:0001002
name: PName
def: "PEFF keyword for the protein full name." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000003 ! PEFF file sequence entry term
[Term]
id: PEFF:0001003
name: NcbiTaxId
def: "PEFF keyword for the NCBI taxonomy identifier." [PSI:PEFF]
xref: value-type:xsd\:int "The allowed value-type for this CV term."
is_a: PEFF:0000003 ! PEFF file sequence entry term
[Term]
id: PEFF:0001004
name: TaxName
def: "PEFF keyword for the taxonomy name (latin or common name)." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000003 ! PEFF file sequence entry term
[Term]
id: PEFF:0001005
name: GName
def: "PEFF keyword for the gene name." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000003 ! PEFF file sequence entry term
[Term]
id: PEFF:0001006
name: Length
def: "PEFF keyword for the sequence length." [PSI:PEFF]
xref: value-type:xsd\:int "The allowed value-type for this CV term."
is_a: PEFF:0000003 ! PEFF file sequence entry term
[Term]
id: PEFF:0001007
name: SV
def: "PEFF keyword for the sequence version." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000003 ! PEFF file sequence entry term
[Term]
id: PEFF:0001008
name: EV
def: "PEFF keyword for the entry version." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000003 ! PEFF file sequence entry term
[Term]
id: PEFF:0001009
name: PE
def: "PEFF keyword for the Protein Evidence; A UniProtKB code 1-5." [PSI:PEFF]
xref: value-type:xsd\:int "The allowed value-type for this CV term."
is_a: PEFF:0000003 ! PEFF file sequence entry term
[Term]
id: PEFF:0001010
name: Processed
def: "PEFF keyword for information on how the full length original protein sequence can be processed into shorter components such as signal peptides and chains." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000003 ! PEFF file sequence entry term
relationship: has_regexp PEFF:1002001 ! regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment
[Term]
id: PEFF:0001011
name: Variant
def: "OBSOLETE Sequence variation (substitution, insertion, deletion)." [PSI:PEFF]
comment: This term was made obsolete in favor of VariantSimple and VariantComplex.
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000003 ! PEFF file sequence entry term
relationship: has_regexp PEFF:1002001 ! regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment
is_obsolete: true
[Term]
id: PEFF:0001012
name: ModResPsi
def: "PEFF keyword for the modified residue with PSI-MOD identifier." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000003 ! PEFF file sequence entry term
relationship: has_regexp PEFF:1002001 ! regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment
[Term]
id: PEFF:0001013
name: ModRes
def: "PEFF keyword for the modified residue without aPSI-MOD or UniMod identifier." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000003 ! PEFF file sequence entry term
relationship: has_regexp PEFF:1002001 ! regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment
[Term]
id: PEFF:0001014
name: AltAC
def: "PEFF keyword for the Alternative Accession Code." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000003 ! PEFF file sequence entry term
[Term]
id: PEFF:0001015
name: SeqStatus
def: "PEFF keyword for the sequence status. Complete or Fragment." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000003 ! PEFF file sequence entry term
relationship: has_regexp PEFF:1002003 ! regular expression for PEFF sequence status
[Term]
id: PEFF:0001016
name: CC
def: "PEFF keyword for the entry associated comment." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000003 ! PEFF file sequence entry term
[Term]
id: PEFF:0001017
name: KW
def: "PEFF keyword for the entry associated keyword(s)." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000003 ! PEFF file sequence entry term
[Term]
id: PEFF:0001018
name: GO
def: "PEFF keyword for the Gene Ontology code." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000003 ! PEFF file sequence entry term
[Term]
id: PEFF:0001019
name: XRef
def: "PEFF keyword for the cross-reference to an external resource." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000003 ! PEFF file sequence entry term
[Term]
id: PEFF:0001020
name: mature protein
def: "Portion of a newly synthesized protein that contributes to a final structure after other components such as signal peptides are removed." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0001032 ! PEFF molecule processing keyword
relationship: has_regexp PEFF:1002001 ! regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment
[Term]
id: PEFF:0001021
name: signal peptide
def: "Short peptide present at the N-terminus of a newly synthesized protein that is cleaved off and is not part of the final mature protein." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0001032 ! PEFF molecule processing keyword
relationship: has_regexp PEFF:1002001 ! regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment
[Term]
id: PEFF:0001022
name: transit peptide
def: "Short peptide present at the N-terminus of a newly synthesized protein that helps the protein through the membrane of its destination organelle." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0001032 ! PEFF molecule processing keyword
relationship: has_regexp PEFF:1002001 ! regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment
[Term]
id: PEFF:0001023
name: Conflict
def: "PEFF keyword for the sequence conflict; a UniProtKB term." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000003 ! PEFF file sequence entry term
relationship: has_regexp PEFF:1002001 ! regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment
[Term]
id: PEFF:0001024
name: Crc64
def: "PEFF keyword for the Sequence checksum in crc64." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000003 ! PEFF file sequence entry term
[Term]
id: PEFF:0001025
name: Domain
def: "PEFF keyword for the sequence range of a domain." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000003 ! PEFF file sequence entry term
[Term]
id: PEFF:0001026
name: ID
def: "PEFF keyword for the UniProtKB specific Protein identifier ID; a UniProtKB term." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000003 ! PEFF file sequence entry term
[Term]
id: PEFF:0001027
name: ModResUnimod
def: "PEFF keyword for the modified residue with UniMod identifier." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000003 ! PEFF file sequence entry term
relationship: has_regexp PEFF:1002001 ! regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment
[Term]
id: PEFF:0001028
name: VariantSimple
def: "PEFF keyword for the simple sequence variation of a single amino acid change. A change to a stop codon is permitted with a * symbol. More complex variations must be encoded with the VariantComplex term." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000003 ! PEFF file sequence entry term
relationship: has_regexp PEFF:1002001 ! regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment
[Term]
id: PEFF:0001029
name: VariantComplex
def: "PEFF keyword for a sequence variation that is more complex than a single amino acid change or change to a stop codon." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000003 ! PEFF file sequence entry term
relationship: has_regexp PEFF:1002001 ! regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment
[Term]
id: PEFF:0001030
name: Proteoform
def: "PEFF keyword for the proteoforms of this protein, constructed as a set of annotation identifiers." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000003 ! PEFF file sequence entry term
[Term]
id: PEFF:0001031
name: DisulfideBond
def: "PEFF keyword for the disulfide bonds in this protein, constructed as a sets of annotation identifiers of two half-cystine modifications." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000003 ! PEFF file sequence entry term
[Term]
id: PEFF:0001032
name: PEFF molecule processing keyword
def: "PEFF keyword describing the type of processing event being described." [PSI:PEFF]
is_a: PEFF:0000003 ! PEFF file sequence entry term
[Term]
id: PEFF:0001033
name: Comment
def: "PEFF keyword for the individual protein entry comment. It is discouraged to put parsable information here. This is only for free-text commentary." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0000003 ! PEFF file sequence entry term
[Term]
id: PEFF:0001034
name: propeptide
def: "Short peptide that is cleaved off a newly synthesized protein and generally immediately degraded in the process of protein maturation, and is not a signal peptide or transit peptide." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0001032 ! PEFF molecule processing keyword
relationship: has_regexp PEFF:1002001 ! regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment
[Term]
id: PEFF:0001035
name: initiator methionine
def: "N-terminal methionine residue of a protein that can be co-translationally cleaved." [PSI:PEFF]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: PEFF:0001032 ! PEFF molecule processing keyword
relationship: has_regexp PEFF:1002001 ! regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment
[Term]
id: PEFF:1002001
name: regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment
def: "([0-9]+|[A-Z*](|.+)?)." [PSI:PEFF]
is_a: MS:1002479 ! regular expression
[Term]
id: PEFF:1002002
name: regular expression for PEFF molecular sequence type
def: "(AA|NA|DNA|cDNA|RNA|RNAi|tRNA|rRNA|siRNA|mDNA|mRNA|snoRNA|ncRNA|EST|[a-z0-9A-Z]+)." [PSI:PEFF]
is_a: MS:1002479 ! regular expression
[Term]
id: PEFF:1002003
name: regular expression for PEFF sequence status
def: "(Complete|Fragment|[a-z0-9A-Z]+)." [PSI:PEFF]
is_a: MS:1002479 ! regular expression
[Typedef]
id: has_domain
name: has_domain
[Typedef]
id: has_order
name: has_order
[Typedef]
id: has_regexp
name: has regexp
[Typedef]
id: has_units
name: has_units
[Typedef]
id: part_of
name: part_of
is_transitive: true