fasterp 0.2.1

High-performance FASTQ preprocessing tool - often faster than fastp with the same interface
Documentation 
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[[bin]]
name = "fasterp"
path = "src/main.rs"

[dependencies.anyhow]
version = "1.0"

[dependencies.aws-config]
optional = true
version = "1.0"

[dependencies.aws-sdk-s3]
optional = true
version = "1.0"

[dependencies.clap]
features = ["derive"]
version = "4.5"

[dependencies.crossbeam-channel]
optional = true
version = "0.5"

[dependencies.flate2]
default-features = false
version = "1.0"

[dependencies.gzp]
default-features = false
features = ["deflate_rust"]
optional = true
version = "0.11"

[dependencies.indexmap]
features = ["serde"]
version = "2.0"

[dependencies.js-sys]
optional = true
version = "=0.3.69"

[dependencies.libdeflater]
optional = true
version = "1.21"

[dependencies.memchr]
version = "2.7"

[dependencies.num_cpus]
optional = true
version = "1.16"

[dependencies.once_cell]
version = "1.20"

[dependencies.rayon]
optional = true
version = "1.10"

[dependencies.rustc-hash]
version = "2.0"

[dependencies.serde]
features = ["derive"]
version = "1.0"

[dependencies.serde_json]
version = "1.0"

[dependencies.tokio]
features = ["rt-multi-thread"]
optional = true
version = "1.0"

[dependencies.ureq]
default-features = false
features = ["tls"]
optional = true
version = "2.9"

[dependencies.wasm-bindgen]
optional = true
version = "=0.2.92"

[dependencies.zstd]
optional = true
version = "0.13"

[dev-dependencies.assert_cmd]
version = "2.0"

[dev-dependencies.criterion]
version = "0.5"

[dev-dependencies.predicates]
version = "3.0"

[dev-dependencies.rand]
version = "0.8"

[dev-dependencies.tempfile]
version = "3.8"

[features]
default = ["native"]
native = ["dep:crossbeam-channel", "dep:num_cpus", "dep:rayon", "dep:aws-sdk-s3", "dep:aws-config", "dep:tokio", "dep:ureq", "dep:libdeflater", "dep:gzp", "flate2/zlib-ng"]
wasm = ["dep:wasm-bindgen", "dep:js-sys", "flate2/rust_backend"]

[lib]
crate-type = ["cdylib", "rlib"]
name = "fasterp"
path = "src/lib.rs"

[package]
authors = ["drbh"]
autobenches = false
autobins = false
autoexamples = false
autolib = false
autotests = false
build = false
categories = ["command-line-utilities", "science"]
description = "High-performance FASTQ preprocessing tool - often faster than fastp with the same interface"
documentation = "https://drbh.github.io/fasterp/"
edition = "2021"
homepage = "https://drbh.github.io/fasterp/"
keywords = ["bioinformatics", "fastq", "genomics", "preprocessing", "quality-control"]
license = "MIT"
name = "fasterp"
readme = "README.md"
repository = "https://github.com/drbh/fasterp"
version = "0.2.1"

[profile.release]
codegen-units = 1
lto = "fat"
opt-level = 3
overflow-checks = false
panic = "abort"
strip = false

[[test]]
name = "integration_tests"
path = "tests/integration_tests.rs"