fastdedup 1.0.1

A fast and memory-efficient FASTX PCR deduplication tool
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2024"
rust-version = "1.85"
name = "fastdedup"
version = "1.0.1"
authors = [
    "Raphaël Ribes",
    "Céline Mandier",
]
build = false
exclude = [
    "fdedup.sif",
    "fdedup.def",
    "*.tar.gz",
    ".idea/",
    ".pixi/",
    "pixi.lock",
    "pixi.toml",
    "imgs/",
    "demo.sh",
    ".github/",
]
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "A fast and memory-efficient FASTX PCR deduplication tool"
documentation = "https://docs.rs/fastdedup"
readme = "README.md"
keywords = [
    "bioinformatics",
    "fastq",
    "fasta",
    "deduplication",
    "pcr",
]
categories = [
    "science",
    "command-line-utilities",
    "science::bioinformatics",
    "science::bioinformatics::genomics",
    "science::bioinformatics::sequence-analysis",
]
license = "MIT"
repository = "https://github.com/RaphaelRibes/FastDedup"

[[bin]]
name = "fdedup"
path = "src/main.rs"

[[test]]
name = "cli"
path = "tests/cli.rs"

[dependencies.anyhow]
version = "1.0.102"

[dependencies.clap]
version = "4.5.60"
features = ["derive"]

[dependencies.flate2]
version = "1.1.9"
features = ["zlib-ng"]
default-features = false

[dependencies.needletail]
version = "0.6.3"

[dependencies.rustc-hash]
version = "2.1.1"

[dependencies.xxhash-rust]
version = "0.8.15"
features = ["xxh3"]

[dev-dependencies.assert_cmd]
version = "2.1.2"

[dev-dependencies.assert_fs]
version = "1.1.3"

[dev-dependencies.predicates]
version = "3.1.4"

[profile.release]
lto = "fat"
codegen-units = 1
panic = "abort"
strip = true