fast-nnt 0.2.5

Rust implementation of the SplitsTree NeighborNet algorithm.
Documentation 
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name: build-publish
on:
  push:
    tags:
      - "v*.*.*"
  workflow_dispatch:
    inputs:
      only:
        description: "Limit to a platform (linux/macos/windows/all)"
        default: "linux"
        type: choice
        options: [linux, macos, windows, all]

jobs:
  plan:
    runs-on: ubuntu-latest
    outputs:
      matrix: ${{ steps.set.outputs.matrix }}
    steps:
      - id: set
        shell: bash
        run: |
          if [[ "${{ github.event_name }}" == "push" || "${{ inputs.only }}" == "all" ]]; then
            echo 'matrix={"os":["ubuntu-latest","macos-latest","windows-latest"], "py":["3.8", "3.9", "3.10", "3.11", "3.12", "3.13"]}' >> "$GITHUB_OUTPUT"
          elif [[ "${{ inputs.only }}" == "linux" ]]; then
            echo 'matrix={"os":["ubuntu-latest"], "py":["3.8", "3.9", "3.10", "3.11", "3.12", "3.13"]}' >> "$GITHUB_OUTPUT"
          elif [[ "${{ inputs.only }}" == "macos" ]]; then
            echo 'matrix={"os":["macos-latest"], "py":["3.8", "3.9", "3.10", "3.11", "3.12", "3.13"]}' >> "$GITHUB_OUTPUT"
          else
            echo 'matrix={"os":["windows-latest"], "py":["3.8", "3.9", "3.10", "3.11", "3.12", "3.13"]}' >> "$GITHUB_OUTPUT"
          fi


  build:
    needs: plan
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix: ${{ fromJSON(needs.plan.outputs.matrix) }}

    steps:
      - name: Checkout
        uses: actions/checkout@v4

      - name: Set up Python ${{ matrix.py }}
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.py }}

      - name: Build wheels for fastnnt-py ${{ runner.os }}-py${{ matrix.py }}
        uses: PyO3/maturin-action@v1
        with:
          manylinux: "auto"
          args: --release -m fastnnt-py/Cargo.toml -i python${{ matrix.py }}

      - name: Upload wheels
        uses: actions/upload-artifact@v4
        with:
          name: wheels-${{ runner.os }}-py${{ matrix.py }}
          path: fastnnt-py/target/wheels/*.whl

  publish:
    needs: build
    runs-on: ubuntu-latest
    steps:
      - name: Download all wheels
        uses: actions/download-artifact@v4
        with:
          pattern: wheels-*
          merge-multiple: true
          path: dist

      - name: Set up Python
        uses: actions/setup-python@v5
        with:
          python-version: "3.12"

      - name: Publish to PyPI
        env:
          PYPI_API_TOKEN: ${{ secrets.PYPI_API_TOKEN }}
        run: |
          python -m pip install --upgrade pip twine
          twine upload -u __token__ -p "$PYPI_API_TOKEN" --skip-existing dist/*