fallow-cli 3.24.1

CLI for fallow, codebase intelligence for TypeScript and JavaScript
Documentation
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#![allow(
    clippy::unwrap_used,
    clippy::expect_used,
    reason = "tests and benches use unwrap and expect to keep fixture setup concise"
)]

#[path = "common/mod.rs"]
mod common;

use common::{
    fixture_path, parse_json, redact_all, run_fallow, run_fallow_combined, run_fallow_in_root,
};
use tempfile::tempdir;

fn init_git_index(root: &std::path::Path) {
    let status = std::process::Command::new("git")
        .args(["init", "-q"])
        .current_dir(root)
        .status()
        .expect("git init should run");
    assert!(status.success(), "git init should succeed");
    let status = std::process::Command::new("git")
        .args(["add", "."])
        .current_dir(root)
        .status()
        .expect("git add should run");
    assert!(status.success(), "git add should succeed");
}

fn has_clone_group_with_files(json: &serde_json::Value, expected: &[&str]) -> bool {
    json["clone_groups"]
        .as_array()
        .unwrap()
        .iter()
        .any(|group| {
            let Some(instances) = group["instances"].as_array() else {
                return false;
            };
            expected.iter().all(|file| {
                instances
                    .iter()
                    .any(|instance| instance["file"].as_str() == Some(*file))
            })
        })
}

/// `fallow dupes --performance` was previously a no-op: the global flag was
/// parsed but never wired through to `DupesOptions`, so users got nothing.
/// This pins the behaviour: human format renders a stderr "Duplication
/// Performance" panel; structured formats (JSON / SARIF / CodeClimate) stay
/// silent so the machine envelope is uncorrupted.
#[test]
fn dupes_performance_panel_renders_for_human_format() {
    let output = run_fallow("dupes", "duplicate-code", &["--performance"]);
    assert!(
        output.stderr.contains("Duplication Performance"),
        "human dupes --performance should print panel header. stderr: {}",
        output.stderr
    );
    assert!(
        output.stderr.contains("clone groups:"),
        "panel should include clone group count. stderr: {}",
        output.stderr
    );
}

#[test]
fn dupes_performance_panel_suppressed_for_json_format() {
    let output = run_fallow(
        "dupes",
        "duplicate-code",
        &["--performance", "--format", "json", "--quiet"],
    );
    assert!(
        !output.stderr.contains("Duplication Performance"),
        "json dupes --performance must not corrupt machine output with the panel. stderr: {}",
        output.stderr
    );
}

#[test]
fn dupes_json_output_has_clone_groups() {
    let output = run_fallow("dupes", "duplicate-code", &["--format", "json", "--quiet"]);
    let json = parse_json(&output);
    assert!(
        json.get("clone_groups").is_some(),
        "dupes JSON should have clone_groups key"
    );
    let groups = json["clone_groups"].as_array().unwrap();
    assert!(
        !groups.is_empty(),
        "duplicate-code fixture should have clone groups"
    );
    assert!(groups.iter().all(|group| group["spread"].is_number()));
}

#[test]
fn dupes_json_has_stats() {
    let output = run_fallow("dupes", "duplicate-code", &["--format", "json", "--quiet"]);
    let json = parse_json(&output);
    assert!(
        json.get("stats").is_some(),
        "dupes JSON should have stats key"
    );
}

#[test]
fn dupes_strict_mode_accepted() {
    let output = run_fallow(
        "dupes",
        "duplicate-code",
        &["--mode", "strict", "--format", "json", "--quiet"],
    );
    assert!(
        output.code == 0 || output.code == 1,
        "dupes --mode strict should not crash, got exit code {}",
        output.code
    );
}

#[test]
fn dupes_mild_mode_accepted() {
    let output = run_fallow(
        "dupes",
        "duplicate-code",
        &["--mode", "mild", "--format", "json", "--quiet"],
    );
    assert!(
        output.code == 0 || output.code == 1,
        "dupes --mode mild should not crash"
    );
}

#[test]
fn dupes_near_reports_gapped_function_similarity() {
    let dir = tempdir().expect("temp dir");
    let shared_prefix = "export function calculate(input: number): number {\n  const doubled = input * 2;\n  const normalized = doubled + input;\n";
    let shared_suffix = "\n  const bounded = Math.max(adjusted, 0);\n  const rounded = Math.round(bounded);\n  const weighted = rounded * normalized;\n  const clamped = Math.min(weighted, 1000);\n  const staged = clamped + doubled;\n  const balanced = staged - input;\n  const projected = balanced * 2;\n  const limited = Math.min(projected, 2000);\n  const restored = limited + normalized;\n  const checked = Math.max(restored, doubled);\n  const combined = checked + bounded;\n  const smoothed = Math.round(combined / 2);\n  const finalized = smoothed + staged;\n  return finalized + normalized;\n}\n";
    let first = format!("{shared_prefix}  const adjusted = normalized + 2;{shared_suffix}");
    let second = format!(
        "{shared_prefix}  const offset = normalized > 10 ? 3 : 2;\n  const adjusted = normalized + offset;{shared_suffix}"
    );
    std::fs::write(dir.path().join("a.ts"), first).expect("write first");
    std::fs::write(dir.path().join("b.ts"), second).expect("write second");

    let output = run_fallow_in_root(
        "dupes",
        dir.path(),
        &[
            "--near",
            "--min-tokens",
            "20",
            "--min-lines",
            "3",
            "--format",
            "json",
            "--quiet",
            "--no-cache",
        ],
    );
    let json = parse_json(&output);

    assert!(json["clone_groups"].as_array().is_some_and(|groups| {
        groups
            .iter()
            .any(|group| group["similarity"].as_f64().is_some())
    }));
}

#[test]
fn dupes_config_ignored_clone_resurfaces_after_added_copy() {
    let dir = tempdir().expect("temp dir");
    let source = "export function shared(value: number): number {\n  const doubled = value * 2;\n  const shifted = doubled + 3;\n  return shifted * 4;\n}\n";
    std::fs::write(dir.path().join("a.ts"), source).expect("write first");
    std::fs::write(dir.path().join("b.ts"), source).expect("write second");
    let args = [
        "--min-tokens",
        "5",
        "--min-lines",
        "2",
        "--format",
        "json",
        "--quiet",
        "--no-cache",
    ];
    let initial = parse_json(&run_fallow_in_root("dupes", dir.path(), &args));
    let group = initial["clone_groups"]
        .as_array()
        .and_then(|groups| groups.first())
        .expect("initial clone group");
    let fingerprint = group["fingerprint"].as_str().expect("fingerprint");
    let ignored_key = format!("{fingerprint}:2");
    std::fs::write(
        dir.path().join(".fallowrc.json"),
        serde_json::json!({ "duplicates": { "ignoredClones": [ignored_key] } }).to_string(),
    )
    .expect("write config");

    let ignored = parse_json(&run_fallow_in_root("dupes", dir.path(), &args));
    assert!(
        ignored["clone_groups"]
            .as_array()
            .is_some_and(Vec::is_empty)
    );
    assert_eq!(ignored["stats"]["clone_groups_ignored"], 1);

    let human = run_fallow_in_root(
        "dupes",
        dir.path(),
        &["--min-tokens", "5", "--min-lines", "2", "--no-cache"],
    );
    assert!(
        human
            .stderr
            .contains("hid 1 reviewed clone group from duplicates.ignoredClones")
    );
    assert!(human.stderr.contains("No code duplication found"));

    std::fs::write(dir.path().join("c.ts"), source).expect("write added copy");
    let resurfaced = parse_json(&run_fallow_in_root("dupes", dir.path(), &args));
    assert!(
        resurfaced["clone_groups"]
            .as_array()
            .is_some_and(|groups| !groups.is_empty())
    );
}

#[test]
fn dupes_min_tokens_filter() {
    let output = run_fallow(
        "dupes",
        "duplicate-code",
        &["--min-tokens", "1000", "--format", "json", "--quiet"],
    );
    let json = parse_json(&output);
    let groups = json["clone_groups"].as_array().unwrap();
    assert!(
        groups.is_empty(),
        "high min-tokens should filter out all clones"
    );
}

#[test]
fn combined_dupes_min_tokens_filter() {
    let output = run_fallow_combined(
        "duplicate-code",
        &["--dupes-min-tokens", "1000", "--format", "json", "--quiet"],
    );
    let json = parse_json(&output);
    let groups = json["dupes"]["clone_groups"].as_array().unwrap();
    assert!(
        groups.is_empty(),
        "high combined-mode --dupes-min-tokens should filter out all clones"
    );
}

#[test]
fn combined_dupes_accepts_remaining_config_knobs() {
    let output = run_fallow_combined(
        "duplicate-code",
        &[
            "--dupes-min-lines",
            "1",
            "--dupes-skip-local",
            "--dupes-cross-language",
            "--dupes-ignore-imports",
            "--format",
            "json",
            "--quiet",
        ],
    );
    assert!(
        output.code == 0 || output.code == 1,
        "combined mode should accept dupes config knobs, got exit code {}. stderr: {}",
        output.code,
        output.stderr
    );
}

#[test]
fn dupes_top_flag() {
    let output = run_fallow(
        "dupes",
        "duplicate-code",
        &["--top", "1", "--format", "json", "--quiet"],
    );
    let json = parse_json(&output);
    let groups = json["clone_groups"].as_array().unwrap();
    assert!(
        groups.len() <= 1,
        "--top 1 should return at most 1 clone group"
    );
}

/// `--top` and `--group-by` are refused together instead of one being dropped.
///
/// The pair used to be accepted and `--top` silently ignored: the run exited 0
/// and reported every clone group after being asked for N, with
/// `clone_groups_omitted` at 0 to confirm nothing had been withheld. A refusal
/// costs one flag and cannot be mistaken for a measurement.
#[test]
fn dupes_refuses_top_together_with_group_by() {
    let output = run_fallow(
        "dupes",
        "duplicate-code",
        &[
            "--top",
            "1",
            "--group-by",
            "directory",
            "--format",
            "json",
            "--quiet",
        ],
    );

    assert_eq!(
        output.code, 2,
        "an unserviceable flag pair is invalid input. stdout:\n{}\nstderr:\n{}",
        output.stdout, output.stderr
    );
    let json = parse_json(&output);
    assert_eq!(json["error"], true);
    assert_eq!(json["exit_code"], 2);
    let message = json["message"].as_str().unwrap();
    assert!(
        message.contains("--top") && message.contains("--group-by"),
        "the message must name both flags, was: {message}"
    );
    // The reason moved onto `help`: as one sentence the refusal was 279
    // characters that soft-wrapped to four terminal lines and buried the
    // actionable half at the end of the fourth.
    let help = json["help"].as_str().unwrap();
    assert!(
        help.contains("per-bucket stats"),
        "the remedy must say why the pair cannot be served, was: {help}"
    );
    assert!(
        help.contains("run one flag or the other"),
        "the remedy must name the way out, was: {help}"
    );
    assert!(
        message.len() < 60,
        "the actionable half must fit one terminal line, was {} chars: {message}",
        message.len()
    );
    assert!(
        json.get("clone_groups").is_none(),
        "a refused run must not also emit a duplication report"
    );
}

/// The refusal reaches the human surface too, and neither flag alone trips it.
#[test]
fn dupes_accepts_top_and_group_by_on_their_own() {
    let refused = run_fallow(
        "dupes",
        "duplicate-code",
        &["--top", "1", "--group-by", "directory", "--quiet"],
    );
    assert_eq!(refused.code, 2, "stderr:\n{}", refused.stderr);
    assert!(
        refused
            .stderr
            .contains("--top and --group-by cannot be combined"),
        "stderr should carry the refusal, was: {}",
        refused.stderr
    );

    let grouped = run_fallow(
        "dupes",
        "duplicate-code",
        &["--group-by", "directory", "--format", "json", "--quiet"],
    );
    assert_eq!(grouped.code, 0, "stderr:\n{}", grouped.stderr);
    assert!(
        parse_json(&grouped)["clone_groups"].is_array(),
        "--group-by alone still reports the full grouped run"
    );

    let capped = run_fallow(
        "dupes",
        "duplicate-code",
        &["--top", "1", "--format", "json", "--quiet"],
    );
    assert_eq!(capped.code, 0, "stderr:\n{}", capped.stderr);
    assert!(
        parse_json(&capped)["clone_groups"]
            .as_array()
            .unwrap()
            .len()
            <= 1,
        "--top alone still caps the rendered groups"
    );
}

/// `--top` narrows the rendered vector, never the measurement.
///
/// The envelope used to mix two scopes in one object: `clone_groups` and
/// `clone_instances` were recomputed from the truncated vector while
/// `files_with_clones` and `duplication_percentage` still described the whole
/// corpus, so a consumer reading all four got numbers that cannot come from the
/// same run. All four now describe the corpus, and the truncation is disclosed
/// through `clone_groups_shown` / `clone_groups_omitted` instead.
#[test]
fn dupes_top_keeps_corpus_stats_and_discloses_the_split() {
    let full = parse_json(&run_fallow(
        "dupes",
        "duplicate-code",
        &["--format", "json", "--quiet"],
    ));
    let limited = parse_json(&run_fallow(
        "dupes",
        "duplicate-code",
        &["--top", "1", "--format", "json", "--quiet"],
    ));

    let corpus_groups = full["stats"]["clone_groups"].as_u64().unwrap();
    assert!(
        corpus_groups > 1,
        "fixture must produce more than one clone group for --top to omit any"
    );

    for field in [
        "clone_groups",
        "clone_families",
        "clone_instances",
        "files_with_clones",
        "duplication_percentage",
    ] {
        assert_eq!(
            limited["stats"][field], full["stats"][field],
            "stats.{field} must describe the measured corpus, not the truncated vector"
        );
    }

    let shown = limited["clone_groups_shown"].as_u64().unwrap();
    let omitted = limited["clone_groups_omitted"].as_u64().unwrap();
    assert_eq!(
        shown,
        limited["clone_groups"].as_array().unwrap().len() as u64,
        "clone_groups_shown must count the groups actually rendered"
    );
    assert!(omitted > 0, "--top 1 must omit the remaining groups");
    assert_eq!(
        shown + omitted,
        corpus_groups,
        "clone_groups_shown + clone_groups_omitted must equal stats.clone_groups"
    );

    assert_eq!(
        full["clone_groups_omitted"].as_u64().unwrap(),
        0,
        "a run without --top omits nothing"
    );
}

/// `--top` narrows the family array too, and that has to be recoverable.
///
/// `--top N` truncates `clone_groups[]` and rebuilds `clone_families[]` from
/// what survives, so the family array collapsed with no corpus-wide counter to
/// compare it against and no shown/omitted pair: a consumer could not recover
/// the true family count by any means. `stats.clone_families` now measures the
/// corpus and the pair discloses the split, exactly as on the group axis.
#[test]
fn dupes_top_discloses_the_family_split_it_truncates() {
    let full = parse_json(&run_fallow(
        "dupes",
        "duplicate-code",
        &["--format", "json", "--quiet"],
    ));
    let limited = parse_json(&run_fallow(
        "dupes",
        "duplicate-code",
        &["--top", "1", "--format", "json", "--quiet"],
    ));

    let corpus_families = full["stats"]["clone_families"].as_u64().unwrap();
    assert!(
        corpus_families > 1,
        "fixture must produce more than one clone family for --top to withhold any"
    );
    assert_eq!(
        corpus_families,
        full["clone_families"].as_array().unwrap().len() as u64,
        "an uncapped run measures exactly the families it carries"
    );
    assert_eq!(
        full["clone_families_omitted"].as_u64().unwrap(),
        0,
        "a run without --top withholds no family"
    );

    let shown = limited["clone_families_shown"].as_u64().unwrap();
    let omitted = limited["clone_families_omitted"].as_u64().unwrap();
    assert_eq!(
        shown,
        limited["clone_families"].as_array().unwrap().len() as u64,
        "clone_families_shown must count the families actually carried"
    );
    assert!(
        omitted > 0,
        "the capped run carries fewer families than the corpus holds"
    );
    assert_eq!(
        shown + omitted,
        corpus_families,
        "clone_families_shown + clone_families_omitted must equal stats.clone_families"
    );
}

/// The default human header must not present a cap as the project total.
///
/// Without `--top` the header named every measured group and a footer named
/// the rest. Under `--top N` both vanished: the header printed `N` as though
/// the project had `N` clone groups, and nothing said otherwise.
#[test]
fn dupes_human_header_names_the_corpus_under_top() {
    let full = parse_json(&run_fallow(
        "dupes",
        "duplicate-code",
        &["--format", "json", "--quiet"],
    ));
    let corpus_groups = full["stats"]["clone_groups"].as_u64().unwrap();
    assert!(
        corpus_groups > 1,
        "fixture must produce more than one clone group for --top to withhold any"
    );

    let capped = run_fallow("dupes", "duplicate-code", &["--top", "1", "--quiet"]);
    assert!(
        capped
            .stdout
            .contains(&format!("Duplicates ({corpus_groups} clone groups)")),
        "the capped header must name the measured corpus: {}",
        capped.stdout
    );
    assert!(
        capped.stdout.contains(&format!(
            "... {} of {corpus_groups} clone groups withheld by a display limit",
            corpus_groups - 1
        )),
        "the capped report must name the groups it withheld: {}",
        capped.stdout
    );
    assert!(
        capped.stdout.contains("clone families withheld by --top"),
        "the capped report must name the families it withheld: {}",
        capped.stdout
    );
    assert!(
        !capped.stdout.contains("the same display limit"),
        "the group and family axes are narrowed by different limits: {}",
        capped.stdout
    );
}

/// `--top 0` renders no clone group, and both human surfaces used to read that
/// empty array as a clean project.
///
/// The run still measured the corpus: `stats.clone_groups` is unchanged by a
/// display cap, so a green "no duplication found" over a non-zero count is the
/// exact false-clean state the shown/omitted split exists to prevent. `dead-code
/// --top 0` already kept its sections, so the two commands disagreed.
#[test]
fn dupes_top_zero_never_reports_a_clean_project() {
    let full = parse_json(&run_fallow(
        "dupes",
        "duplicate-code",
        &["--format", "json", "--quiet"],
    ));
    let corpus_groups = full["stats"]["clone_groups"].as_u64().unwrap();
    assert!(
        corpus_groups > 0,
        "fixture must produce clone groups for --top 0 to withhold"
    );

    let capped = run_fallow("dupes", "duplicate-code", &["--top", "0"]);
    let combined = format!("{}{}", capped.stdout, capped.stderr);
    assert!(
        !combined.contains("No code duplication found"),
        "a fully capped listing must not read as a clean project: {combined}"
    );
    assert!(
        capped
            .stdout
            .contains(&format!("Duplicates ({corpus_groups} clone groups)")),
        "the header must still name the measured corpus: {}",
        capped.stdout
    );
    assert!(
        capped.stdout.contains(&format!(
            "... {corpus_groups} of {corpus_groups} clone groups withheld by a display limit"
        )),
        "the footer must say every measured group was withheld: {}",
        capped.stdout
    );

    let summary = run_fallow("dupes", "duplicate-code", &["--top", "0", "--summary"]);
    let summary_combined = format!("{}{}", summary.stdout, summary.stderr);
    assert!(
        !summary_combined.contains("No duplication found"),
        "the summary block must not read as a clean project either: {summary_combined}"
    );
    assert!(
        summary
            .stdout
            .contains(&format!("Corpus totals: {corpus_groups} clone groups")),
        "the summary must state the corpus it measured: {}",
        summary.stdout
    );
}

/// The human summary block must disclose the same split the envelope does, on
/// both axes.
///
/// `Clone families` and `Clone groups` count the rendered vectors while
/// `Duplicated lines` and `Duplication rate` describe the measured corpus, so
/// under `--top` the four aligned numbers come from two different scopes. The
/// note used to name the group axis only, which left the truncated family
/// count reading as a corpus number sitting right above a notice that names
/// groups.
#[test]
fn dupes_summary_discloses_both_axes_a_display_limit_withheld() {
    let full = parse_json(&run_fallow(
        "dupes",
        "duplicate-code",
        &["--format", "json", "--quiet"],
    ));
    let corpus_groups = full["stats"]["clone_groups"].as_u64().unwrap();
    let corpus_families = full["stats"]["clone_families"].as_u64().unwrap();
    assert!(
        corpus_groups > 1 && corpus_families > 1,
        "fixture must produce more than one clone group and family for --top to withhold any"
    );

    let limited = parse_json(&run_fallow(
        "dupes",
        "duplicate-code",
        &["--top", "1", "--format", "json", "--quiet"],
    ));
    let families_omitted = limited["clone_families_omitted"].as_u64().unwrap();
    assert!(families_omitted > 0, "--top 1 must withhold a family");

    let summary = run_fallow(
        "dupes",
        "duplicate-code",
        &["--summary", "--top", "1", "--quiet"],
    );
    assert!(
        summary
            .stdout
            .contains(&format!("{} more clone group", corpus_groups - 1)),
        "the capped summary must name the withheld groups: {}",
        summary.stdout
    );
    assert!(
        summary
            .stdout
            .contains(&format!("{families_omitted} more clone famil")),
        "the capped summary must name the withheld families: {}",
        summary.stdout
    );
    assert!(
        summary.stdout.contains(&format!(
            "Corpus totals: {corpus_groups} clone groups, {corpus_families} clone families"
        )),
        "the capped summary must say which scope the measured stats describe: {}",
        summary.stdout
    );

    let uncapped = run_fallow("dupes", "duplicate-code", &["--summary", "--quiet"]);
    assert!(
        !uncapped.stdout.contains("withheld"),
        "an uncapped summary withholds nothing and must stay silent: {}",
        uncapped.stdout
    );
}

#[test]
fn dupes_filters_atomic_function_call_clones() {
    let dir = tempdir().unwrap();
    std::fs::create_dir_all(dir.path().join("src/a")).unwrap();
    std::fs::create_dir_all(dir.path().join("src/b")).unwrap();
    std::fs::write(
        dir.path().join("package.json"),
        r#"{"name":"dupes-call-filter","type":"module","main":"src/a/call.ts"}"#,
    )
    .unwrap();
    let call = r#"export function alpha() {
  return createComplexWidget(
    currentProject.id,
    currentUser.id,
    activeWorkspace.slug,
    selectedEnvironment.name,
    featureFlags.enableAuditTrail,
    permissions.canPublish,
    billingAccount.plan,
    retryPolicy.maxAttempts,
    retryPolicy.backoffMs,
    notifier.email,
    logger.child({ scope: "workflow" }),
    {
      source: "settings",
      reason: "manual-run",
      requestedBy: currentUser.email,
      correlationId: request.id,
      priority: selectedWorkflow.priority,
      tags: selectedWorkflow.tags,
      metadata: selectedWorkflow.metadata,
      createdAt: clock.now(),
    },
  );
}
"#;
    std::fs::write(dir.path().join("src/a/call.ts"), call).unwrap();
    std::fs::write(
        dir.path().join("src/b/call.ts"),
        call.replace("alpha", "beta"),
    )
    .unwrap();
    init_git_index(dir.path());

    let output = run_fallow_in_root(
        "dupes",
        dir.path(),
        &["--format", "json", "--quiet", "--no-cache"],
    );
    let json = parse_json(&output);
    let groups = json["clone_groups"].as_array().unwrap();
    assert!(
        groups.is_empty(),
        "atomic call clones should be filtered. stdout: {} stderr: {}",
        output.stdout,
        output.stderr
    );
    assert_eq!(json["stats"]["clone_groups"], serde_json::json!(0));
}

#[test]
fn dupes_still_reports_repeated_control_flow() {
    let dir = tempdir().unwrap();
    std::fs::create_dir_all(dir.path().join("src/a")).unwrap();
    std::fs::create_dir_all(dir.path().join("src/b")).unwrap();
    std::fs::write(
        dir.path().join("package.json"),
        r#"{"name":"dupes-control-flow","type":"module","main":"src/a/flow.ts"}"#,
    )
    .unwrap();
    let flow = r#"export function alpha(value) {
  const normalized = normalizeValue(value);
  const score = calculateScore(normalized);
  if (score > 90) {
    auditTrail.record("high", normalized.id);
    notifications.send("high-score", normalized.owner);
    metrics.increment("score.high");
    return buildResult(normalized, "high", score);
  }
  if (score > 50) {
    auditTrail.record("medium", normalized.id);
    notifications.send("medium-score", normalized.owner);
    metrics.increment("score.medium");
    return buildResult(normalized, "medium", score);
  }
  auditTrail.record("low", normalized.id);
  notifications.send("low-score", normalized.owner);
  metrics.increment("score.low");
  return buildResult(normalized, "low", score);
}
"#;
    std::fs::write(dir.path().join("src/a/flow.ts"), flow).unwrap();
    std::fs::write(
        dir.path().join("src/b/flow.ts"),
        flow.replace("alpha", "beta"),
    )
    .unwrap();
    init_git_index(dir.path());

    let output = run_fallow_in_root(
        "dupes",
        dir.path(),
        &["--format", "json", "--quiet", "--no-cache"],
    );
    let json = parse_json(&output);
    let groups = json["clone_groups"].as_array().unwrap();
    assert!(
        !groups.is_empty(),
        "non-atomic repeated control flow should still be reported. stdout: {} stderr: {}",
        output.stdout,
        output.stderr
    );
}

#[test]
fn dupes_still_reports_repeated_callback_bodies_inside_calls() {
    let dir = tempdir().unwrap();
    std::fs::create_dir_all(dir.path().join("src/a")).unwrap();
    std::fs::create_dir_all(dir.path().join("src/b")).unwrap();
    std::fs::write(
        dir.path().join("package.json"),
        r#"{"name":"dupes-callback-body","type":"module","main":"src/a/routes.ts"}"#,
    )
    .unwrap();
    let route = r#"router.get("/alpha", async (ctx) => {
  const normalized = normalizeValue(ctx.input);
  const score = calculateScore(normalized);
  if (score > 90) {
    auditTrail.record("high", normalized.id);
    notifications.send("high-score", normalized.owner);
    metrics.increment("score.high");
    return buildResult(normalized, "high", score);
  }
  if (score > 50) {
    auditTrail.record("medium", normalized.id);
    notifications.send("medium-score", normalized.owner);
    metrics.increment("score.medium");
    return buildResult(normalized, "medium", score);
  }
  auditTrail.record("low", normalized.id);
  notifications.send("low-score", normalized.owner);
  metrics.increment("score.low");
  return buildResult(normalized, "low", score);
});
"#;
    std::fs::write(dir.path().join("src/a/routes.ts"), route).unwrap();
    std::fs::write(
        dir.path().join("src/b/routes.ts"),
        route.replace("/alpha", "/beta"),
    )
    .unwrap();
    init_git_index(dir.path());

    let output = run_fallow_in_root(
        "dupes",
        dir.path(),
        &["--format", "json", "--quiet", "--no-cache"],
    );
    let json = parse_json(&output);
    let groups = json["clone_groups"].as_array().unwrap();
    assert!(
        !groups.is_empty(),
        "callback bodies inside calls should still be reported. stdout: {} stderr: {}",
        output.stdout,
        output.stderr
    );
}

#[test]
#[expect(
    clippy::too_many_lines,
    reason = "test fixture; linear setup/assert, length is not a maintainability concern"
)]
fn dupes_reports_web_format_clone_groups() {
    let dir = tempdir().unwrap();
    std::fs::create_dir_all(dir.path().join("src")).unwrap();
    std::fs::write(
        dir.path().join("package.json"),
        r#"{"name":"dupes-web-formats","type":"module","main":"src/main.ts","dependencies":{"astro":"latest","svelte":"latest","vue":"latest"}}"#,
    )
    .unwrap();
    std::fs::write(
        dir.path().join("src/main.ts"),
        "export const entry = true;\n",
    )
    .unwrap();

    let css = r".metric-card {
  display: grid;
  gap: var(--space-3);
  padding: clamp(12px, 2vw, 24px);
  border: 1px solid var(--border-muted);
}
.metric-card__title {
  font-weight: 700;
  color: var(--text-strong);
}
";
    std::fs::write(dir.path().join("src/alpha.css"), css).unwrap();
    std::fs::write(dir.path().join("src/beta.css"), css).unwrap();

    let vue = r#"<template>
  <section class="metric-card">
    <header class="metric-card__title">Revenue</header>
    <p class="metric-card__value">{{ value }}</p>
  </section>
</template>
<style>
.metric-card {
  display: grid;
  gap: var(--space-3);
  padding: 16px;
}
</style>
"#;
    std::fs::write(dir.path().join("src/AlphaCard.vue"), vue).unwrap();
    std::fs::write(dir.path().join("src/BetaCard.vue"), vue).unwrap();

    let svelte = r#"<script>
  export let value = 0;
</script>
<section class="metric-card">
  <header class="metric-card__title">Revenue</header>
  <p class="metric-card__value">{value}</p>
</section>
<style>
.metric-card {
  display: grid;
  gap: var(--space-3);
  padding: 16px;
}
</style>
"#;
    std::fs::write(dir.path().join("src/AlphaPanel.svelte"), svelte).unwrap();
    std::fs::write(dir.path().join("src/BetaPanel.svelte"), svelte).unwrap();

    let astro = r#"---
const value = 42;
---
<section class="metric-card">
  <header class="metric-card__title">Revenue</header>
  <p class="metric-card__value">{value}</p>
</section>
<style>
.metric-card {
  display: grid;
  gap: var(--space-3);
  padding: 16px;
}
</style>
"#;
    std::fs::write(dir.path().join("src/AlphaPage.astro"), astro).unwrap();
    std::fs::write(dir.path().join("src/BetaPage.astro"), astro).unwrap();
    init_git_index(dir.path());

    let output = run_fallow_in_root(
        "dupes",
        dir.path(),
        &[
            "--format",
            "json",
            "--quiet",
            "--no-cache",
            "--min-tokens",
            "10",
            "--min-lines",
            "2",
        ],
    );
    let json = parse_json(&output);
    assert!(
        has_clone_group_with_files(&json, &["src/alpha.css", "src/beta.css"]),
        "CSS clone group should be reported. stdout: {} stderr: {}",
        output.stdout,
        output.stderr
    );
    assert!(
        has_clone_group_with_files(&json, &["src/AlphaCard.vue", "src/BetaCard.vue"]),
        "Vue clone group should be reported. stdout: {} stderr: {}",
        output.stdout,
        output.stderr
    );
    assert!(
        has_clone_group_with_files(&json, &["src/AlphaPanel.svelte", "src/BetaPanel.svelte"]),
        "Svelte clone group should be reported. stdout: {} stderr: {}",
        output.stdout,
        output.stderr
    );
    assert!(
        has_clone_group_with_files(&json, &["src/AlphaPage.astro", "src/BetaPage.astro"]),
        "Astro clone group should be reported. stdout: {} stderr: {}",
        output.stdout,
        output.stderr
    );
}

#[test]
fn dupes_does_not_report_cross_format_clone_groups() {
    let dir = tempdir().unwrap();
    std::fs::create_dir_all(dir.path().join("src")).unwrap();
    std::fs::write(
        dir.path().join("package.json"),
        r#"{"name":"dupes-format-namespace","type":"module","main":"src/main.ts"}"#,
    )
    .unwrap();

    let js = "export function alpha() { color: red; margin: 0; padding: 1; }";
    let css = ".alpha { color: red; margin: 0; padding: 1; }";
    std::fs::write(dir.path().join("src/alpha.ts"), js).unwrap();
    std::fs::write(dir.path().join("src/beta.ts"), js).unwrap();
    std::fs::write(dir.path().join("src/alpha.css"), css).unwrap();
    init_git_index(dir.path());

    let output = run_fallow_in_root(
        "dupes",
        dir.path(),
        &[
            "--format",
            "json",
            "--quiet",
            "--no-cache",
            "--min-tokens",
            "5",
            "--min-lines",
            "1",
        ],
    );
    let json = parse_json(&output);
    assert!(
        has_clone_group_with_files(&json, &["src/alpha.ts", "src/beta.ts"]),
        "same-format JS clone should still be reported. stdout: {} stderr: {}",
        output.stdout,
        output.stderr
    );
    assert!(
        !has_clone_group_with_files(&json, &["src/alpha.ts", "src/alpha.css"]),
        "JS and CSS should not form cross-format clone groups. stdout: {} stderr: {}",
        output.stdout,
        output.stderr
    );
}

#[test]
fn dupes_does_not_report_clone_groups_spanning_sfc_sections() {
    let dir = tempdir().unwrap();
    std::fs::create_dir_all(dir.path().join("src")).unwrap();
    std::fs::write(
        dir.path().join("package.json"),
        r#"{"name":"dupes-sfc-boundary","type":"module","main":"src/main.ts","dependencies":{"vue":"latest"}}"#,
    )
    .unwrap();
    std::fs::write(
        dir.path().join("src/main.ts"),
        "export const entry = true;\n",
    )
    .unwrap();
    let component = concat!(
        "<script>let n = 1;</script><style>.a",
        "{",
        "b:c",
        "}</style>"
    );
    std::fs::write(dir.path().join("src/Alpha.vue"), component).unwrap();
    std::fs::write(dir.path().join("src/Beta.vue"), component).unwrap();
    init_git_index(dir.path());

    let output = run_fallow_in_root(
        "dupes",
        dir.path(),
        &[
            "--format",
            "json",
            "--quiet",
            "--no-cache",
            "--min-tokens",
            "9",
            "--min-lines",
            "1",
        ],
    );
    let json = parse_json(&output);
    let groups = json["clone_groups"].as_array().unwrap();
    assert!(
        groups.is_empty(),
        "clone groups should not span SFC section boundaries. stdout: {} stderr: {}",
        output.stdout,
        output.stderr
    );
}

#[test]
fn dupes_group_by_package_validates_non_monorepo() {
    let dir = tempdir().unwrap();
    std::fs::write(
        dir.path().join("package.json"),
        r#"{"name":"single","version":"1.0.0","main":"src/index.ts"}"#,
    )
    .unwrap();
    std::fs::create_dir_all(dir.path().join("src")).unwrap();
    std::fs::write(dir.path().join("src/index.ts"), "export const value = 1;\n").unwrap();

    let output = run_fallow_in_root(
        "dupes",
        dir.path(),
        &["--group-by", "package", "--format", "json", "--quiet"],
    );

    assert_eq!(output.code, 2, "dupes should reject package grouping");
    let parsed: serde_json::Value =
        serde_json::from_str(&output.stdout).expect("stdout should be a single JSON error object");
    assert_eq!(parsed["error"], serde_json::json!(true));
    let msg = parsed["message"]
        .as_str()
        .expect("error message should be a string");
    assert!(
        msg.contains("monorepo"),
        "error message should mention 'monorepo': {msg}"
    );
}

#[test]
fn dupes_save_baseline_creates_parent_directory() {
    let dir = tempdir().unwrap();
    std::fs::write(
        dir.path().join("package.json"),
        r#"{"name":"dupes-save","version":"1.0.0"}"#,
    )
    .unwrap();
    std::fs::create_dir_all(dir.path().join("src")).unwrap();
    let clone = "export function shared(value) {\n  if (value > 1) {\n    return value * 2;\n  }\n  return value + 1;\n}\n";
    std::fs::write(dir.path().join("src/one.ts"), clone).unwrap();
    std::fs::write(dir.path().join("src/two.ts"), clone).unwrap();

    let baseline_path = dir.path().join("fallow-baselines/dupes.json");
    let output = run_fallow_in_root(
        "dupes",
        dir.path(),
        &[
            "--save-baseline",
            baseline_path.to_str().unwrap(),
            "--format",
            "json",
            "--quiet",
        ],
    );
    let rendered = redact_all(&format!("{}\n{}", output.stdout, output.stderr), dir.path());
    assert!(
        output.code == 0 || output.code == 1,
        "dupes save baseline should not crash: {rendered}"
    );
    assert!(
        baseline_path.exists(),
        "dupes save baseline should create nested file: {rendered}"
    );
}

#[test]
fn dupes_baseline_survives_line_shift_and_reports_extra_copy() {
    let dir = tempdir().unwrap();
    std::fs::write(
        dir.path().join("package.json"),
        r#"{"name":"dupes-baseline-shift","version":"1.0.0"}"#,
    )
    .unwrap();
    std::fs::create_dir_all(dir.path().join("src")).unwrap();
    let clone = "export function shared(value) {\n  if (value > 1) {\n    return value * 2;\n  }\n  return value + 1;\n}\n";
    std::fs::write(dir.path().join("src/one.ts"), clone).unwrap();
    std::fs::write(dir.path().join("src/two.ts"), clone).unwrap();

    let baseline_path = dir.path().join("dupes-baseline.json");
    let thresholds = ["--min-tokens", "10", "--min-lines", "2"];
    let mut save_args = vec!["--save-baseline", baseline_path.to_str().unwrap()];
    save_args.extend(thresholds);
    save_args.extend(["--format", "json", "--quiet", "--no-cache"]);
    let saved = run_fallow_in_root("dupes", dir.path(), &save_args);
    let saved_json = parse_json(&saved);
    assert!(
        has_clone_group_with_files(&saved_json, &["src/one.ts", "src/two.ts"]),
        "fixture should produce a clone group. stdout: {} stderr: {}",
        saved.stdout,
        saved.stderr
    );

    std::fs::write(
        dir.path().join("src/one.ts"),
        format!("// unrelated new comment\n\n{clone}"),
    )
    .unwrap();

    let mut compare_args = vec!["--baseline", baseline_path.to_str().unwrap()];
    compare_args.extend(thresholds);
    compare_args.extend(["--format", "json", "--quiet", "--no-cache"]);
    let shifted = run_fallow_in_root("dupes", dir.path(), &compare_args);
    let shifted_json = parse_json(&shifted);
    assert!(
        shifted_json["clone_groups"].as_array().unwrap().is_empty(),
        "a line shift must not resurface a baselined clone. stdout: {} stderr: {}",
        shifted.stdout,
        shifted.stderr
    );

    std::fs::write(dir.path().join("src/three.ts"), clone).unwrap();
    let copied = run_fallow_in_root("dupes", dir.path(), &compare_args);
    let copied_json = parse_json(&copied);
    assert!(
        has_clone_group_with_files(&copied_json, &["src/three.ts"]),
        "a fresh copy in a third file must be reported. stdout: {} stderr: {}",
        copied.stdout,
        copied.stderr
    );
}

#[test]
fn dupes_json_paths_are_relative() {
    let output = run_fallow("dupes", "duplicate-code", &["--format", "json", "--quiet"]);
    let json = parse_json(&output);
    let groups = json["clone_groups"].as_array().unwrap();
    assert!(!groups.is_empty(), "fixture should have clone groups");

    for group in groups {
        for instance in group["instances"].as_array().unwrap() {
            let path = instance["file"].as_str().unwrap();
            assert!(
                !path.starts_with('/'),
                "clone group instance path should be relative, got: {path}"
            );
        }
    }

    if let Some(families) = json.get("clone_families").and_then(|f| f.as_array()) {
        for family in families {
            if let Some(files) = family.get("files").and_then(|f| f.as_array()) {
                for file in files {
                    let path = file.as_str().unwrap();
                    assert!(
                        !path.starts_with('/'),
                        "clone family file path should be relative, got: {path}"
                    );
                }
            }
        }
    }
}

#[test]
fn dupes_compact_output_includes_traceable_clone_metadata() {
    let output = run_fallow(
        "dupes",
        "duplicate-code",
        &["--format", "compact", "--quiet"],
    );
    assert!(
        output.stdout.contains("code-duplication:"),
        "compact dupes output should use the code-duplication issue tag. stdout: {}",
        output.stdout
    );
    assert!(
        output.stdout.contains(":fingerprint=dup:"),
        "compact dupes output should include traceable clone fingerprints. stdout: {}",
        output.stdout
    );
    assert!(
        output.stdout.contains(",tokens=")
            && output.stdout.contains(",lines=")
            && output.stdout.contains(",instances="),
        "compact dupes output should include parseable clone metadata. stdout: {}",
        output.stdout
    );
    assert!(
        !output.stdout.contains("clone-group-"),
        "compact dupes output should not rely on ordinal-only clone labels. stdout: {}",
        output.stdout
    );
}

#[test]
fn dupes_human_output_snapshot() {
    let output = run_fallow("dupes", "duplicate-code", &["--quiet"]);
    let root = fixture_path("duplicate-code");
    let redacted = redact_all(&output.stdout, &root);
    insta::assert_snapshot!("dupes_human_output", redacted);
}

/// Standalone `fallow dupes` must include React Router's `.client` / `.server`
/// folders in its file walk. The threshold is dropped to the minimum so the
/// small fixture files survive dupes' token / line filters and surface in
/// `stats.total_files`.
#[test]
fn dupes_includes_plugin_scoped_hidden_dirs_for_react_router() {
    let output = run_fallow(
        "dupes",
        "react-router-conventions",
        &[
            "--format",
            "json",
            "--quiet",
            "--min-tokens",
            "1",
            "--min-lines",
            "1",
        ],
    );
    assert_eq!(output.code, 0, "stderr was: {}", output.stderr);

    let json = parse_json(&output);
    let total_files = json["stats"]["total_files"]
        .as_u64()
        .expect("stats.total_files is a number");
    assert!(
        total_files >= 5,
        "expected stats.total_files >= 5 (root + routes + .client + .server), got {total_files}"
    );
}

/// Standalone `fallow dupes` must apply the duplication threshold gate.
///
/// Regression for #2009: `run_dupes` rendered through
/// `print_dupes_result_with_grouping`, which returned the renderer's exit code
/// without ever consulting `exceeds_threshold`. Combined mode kept gating
/// (it renders via `print_dupes_result`), so the two entry points disagreed
/// and standalone runs exited 0 at 100% duplication.
#[test]
fn dupes_standalone_exits_one_when_duplication_exceeds_threshold() {
    let output = run_fallow("dupes", "duplicate-code", &["--threshold", "1", "--quiet"]);
    assert_eq!(
        output.code, 1,
        "duplication above the threshold must exit 1. stderr: {}",
        output.stderr
    );
    assert!(
        output.stderr.contains("exceeds threshold"),
        "expected a threshold diagnostic on stderr, got: {}",
        output.stderr
    );
}

/// Non-vacuous control for the gate above: the same fixture under a threshold
/// it does not reach must stay green and stay silent. Without this, a fix that
/// made `dupes` unconditionally exit 1 would pass the positive test.
#[test]
fn dupes_standalone_exits_zero_when_duplication_below_threshold() {
    let output = run_fallow("dupes", "duplicate-code", &["--threshold", "99", "--quiet"]);
    assert_eq!(
        output.code, 0,
        "duplication below the threshold must exit 0. stderr: {}",
        output.stderr
    );
    assert!(
        !output.stderr.contains("exceeds threshold"),
        "no threshold diagnostic expected below the threshold, got: {}",
        output.stderr
    );
}

/// The gate is a property of the run, not of the renderer, so it must fire
/// identically for machine formats. #2009 was reported against `--format json`.
#[test]
fn dupes_standalone_threshold_gate_applies_to_json_format() {
    let output = run_fallow(
        "dupes",
        "duplicate-code",
        &["--threshold", "1", "--format", "json", "--quiet"],
    );
    assert_eq!(
        output.code, 1,
        "json format must gate on the threshold too. stderr: {}",
        output.stderr
    );
    let json = parse_json(&output);
    assert!(
        json["stats"]["duplication_percentage"]
            .as_f64()
            .expect("stats.duplication_percentage is a number")
            > 1.0,
        "fixture should exceed the 1% threshold for this test to mean anything"
    );
}

/// Pins the standalone/combined parity that #2009 broke: both entry points
/// must reach the same verdict for the same threshold.
#[test]
fn dupes_threshold_verdict_matches_between_standalone_and_combined() {
    let standalone = run_fallow("dupes", "duplicate-code", &["--threshold", "1", "--quiet"]);
    let combined = run_fallow_combined(
        "duplicate-code",
        &["--dupes-threshold", "1", "--quiet", "--skip", "health"],
    );
    assert_eq!(
        standalone.code, 1,
        "standalone dupes should gate. stderr: {}",
        standalone.stderr
    );
    assert_eq!(
        combined.code, 1,
        "combined mode should gate. stderr: {}",
        combined.stderr
    );
    assert!(
        combined.stderr.contains("exceeds threshold"),
        "combined mode should keep its threshold diagnostic, got: {}",
        combined.stderr
    );
}