extended-htslib 0.4.2

This library provides extended HTSlib bindings and a high level Rust API for reading and writing BAM files.
Documentation 
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2024"
name = "extended-htslib"
version = "0.4.2"
authors = [
    "DorianCoding <guilhem.zeitoun@cnrs.fr>",
    "Christopher Schröder <christopher.schroeder@tu-dortmund.de>",
    "Johannes Köster <johannes.koester@tu-dortmund.de>",
]
build = false
include = [
    "src/**/*",
    "LICENSE.md",
    "README.md",
    "CHANGELOG.md",
]
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "This library provides extended HTSlib bindings and a high level Rust API for reading and writing BAM files."
documentation = "https://docs.rs/extended-htslib"
readme = "README.md"
keywords = [
    "htslib",
    "bam",
    "bioinformatics",
    "pileup",
    "sequencing",
]
license = "MIT"
repository = "https://src.koda.cnrs.fr/imgt-igh/extended-rustlib"

[package.metadata.release]
pre-release-commit-message = "release version {{version}}"
tag-message = "Version {{version}} of extended-htslib."

[features]
bindgen = ["hts-sys/bindgen"]
bzip2 = ["hts-sys/bzip2"]
curl = ["hts-sys/curl"]
default = [
    "bzip2",
    "lzma",
    "curl",
]
gcs = ["hts-sys/gcs"]
libdeflate = ["hts-sys/libdeflate"]
lzma = ["hts-sys/lzma"]
pileuprayon = ["dep:rayon"]
s3 = ["hts-sys/s3"]
serde_feature = [
    "serde",
    "serde_bytes",
    "bio-types/serde",
]
static = ["hts-sys/static"]

[lib]
name = "extended_htslib"
path = "src/lib.rs"

[dependencies.bio-types]
version = ">=0.9"

[dependencies.byteorder]
version = "1.5"

[dependencies.custom_derive]
version = "0.1"

[dependencies.derive-new]
version = "0.7"

[dependencies.hts-sys]
version = "2.2.1"
features = ["bindgen"]
default-features = false

[dependencies.ieee754]
version = "0.2"

[dependencies.lazy_static]
version = "1.5"

[dependencies.libc]
version = "0.2"

[dependencies.libz-sys]
version = ">=1.1.15"

[dependencies.linear-map]
version = "1.2"

[dependencies.newtype_derive]
version = "0.1"

[dependencies.rayon]
version = "1.12.0"
optional = true

[dependencies.regex]
version = "1.13"

[dependencies.serde]
version = "^1"
features = ["derive"]
optional = true

[dependencies.serde_bytes]
version = "0.11"
optional = true

[dependencies.thiserror]
version = "^2"

[dependencies.url]
version = "2.5"

[dev-dependencies.bincode]
version = "2.0"

[dev-dependencies.criterion]
version = "0.8.2"
features = ["html_reports"]

[dev-dependencies.pretty_assertions]
version = "1.4"

[dev-dependencies.serde_json]
version = "1.0"

[dev-dependencies.tempfile]
version = "3.27.0"