dupblaster 0.3.0

Fast duplicate marking for query-grouped SAM/BAM files, inspired by samblaster and Picard MarkDuplicates
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# Configuration for cargo-release (https://github.com/crate-ci/cargo-release).
#
# One-time setup:
#   cargo install cargo-release
#
# Cut a release:
#   cargo release 0.1.0            # dry run — shows what would happen
#   cargo release 0.1.0 --execute  # bumps the crate version, rewrites the
#                                  # [Unreleased] section of CHANGELOG.md,
#                                  # commits, tags v0.1.0, pushes, and
#                                  # publishes to crates.io.

# Publish to crates.io on release. Requires a crates.io token configured
# on the maintainer's machine (`cargo login`).
publish = true

# Tag template: `vX.Y.Z`. Match git-tag conventions and what bioconda
# recipes typically grep for.
tag-name = "v{{version}}"

# Commit each released crate's version bump on its own, rather than in one
# consolidated workspace commit. This is what makes `{{version}}` interpolate:
# in the consolidated-commit context cargo-release binds only `{{date}}`, so
# every version variable (`{{version}}`, `{{next_version}}`, `{{prev_version}}`)
# renders as a literal — that is how v0.1.1 landed with the commit message
# "Bump version to {{next_version}}". Only dupblaster is ever released here
# (bench-compare sets `publish = false`), so "per-crate" still means one commit.
consolidate-commits = false

# Match the commit-message style used for past version bumps.
pre-release-commit-message = "Bump version to {{version}}"

# Rewrite CHANGELOG.md at release time:
#   1. Replace `## [Unreleased]` with `## [Unreleased]\n\n## [X.Y.Z] - YYYY-MM-DD`
#      so the previous section is renamed and a fresh empty Unreleased
#      section is left at the top for future work.
#   2. Update the compare URL at the bottom of the file: the old
#      `[Unreleased]: .../compare/HEAD` becomes
#      `[Unreleased]: .../compare/vX.Y.Z...HEAD`, and a new
#      `[X.Y.Z]: .../compare/vP.R.E...vX.Y.Z` line is appended.
#
# `prerelease = true` allows these to be no-ops on a fresh repo where
# the previous tag doesn't exist yet (avoids "previous version not
# found" errors before the first release).
pre-release-replacements = [
    { file = "CHANGELOG.md", search = "## \\[Unreleased\\]", replace = "## [Unreleased]\n\n## [{{version}}] - {{date}}", exactly = 1 },
    # Regex matches the current `[Unreleased]:` compare link whatever it points
    # to (`/compare/HEAD` on the first release, `/compare/vX.Y.Z...HEAD` after),
    # so this works for every release, not just the first.
    { file = "CHANGELOG.md", search = "\\[Unreleased\\]: https://github.com/fulcrumgenomics/dupblaster/compare/.+", replace = "[Unreleased]: https://github.com/fulcrumgenomics/dupblaster/compare/v{{version}}...HEAD\n[{{version}}]: https://github.com/fulcrumgenomics/dupblaster/releases/tag/v{{version}}", exactly = 1 },
]