drprg 0.1.1

Drug resistance prediction with reference graphs
Documentation 
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name: Rust

on: [ push, pull_request ]

env:
  CARGO_TERM_COLOR: always

jobs:
  test:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v3

      - uses: taiki-e/install-action@just

      - uses: actions/cache@v3
        with:
          path: src/ext
          key: ${{ runner.os }}-ext-deps-${{ hashFiles('**/justfile') }}

      - name: Install toolchain
        uses: dtolnay/rust-toolchain@stable
        with:
          components: rustfmt,clippy

      - name: Format
        run: cargo fmt -- --check

      - name: Lint
        run: just lint

      - name: Install external dependencies
        run: |
          if [ ! -d "src/ext" ]; then
            just deps
          fi

      - uses: actions/cache@v3
        with:
          path: |
            ~/.cargo/registry
            ~/.cargo/git
            target
          key: ${{ runner.os }}-cargo-${{ hashFiles('**/Cargo.lock') }}

      - name: Build
        run: cargo build --verbose

      - name: Run tests
        run: just test

      - uses: taiki-e/install-action@v2
        with:
          tool: cargo-tarpaulin@0.23.1

      - name: Run cargo-tarpaulin
        run: just coverage

      - name: Upload to codecov.io
        uses: codecov/codecov-action@v3
        with:
          token: ${{ secrets.CODECOV_TOKEN }}
          fail_ci_if_error: false
          verbose: true