doiget-cli 0.1.1

//! doiget CLI binary.
//!
//! Phase 0 ships the CLI skeleton: `doiget --help` works, and each subcommand
//! returns a Phase-1-pending error message. Real implementations land in Phase 1+.
//!
//! Phase 1 progressively replaces the Phase-0 bail-out per subcommand. The
//! `config`, `info`, `list-recent`, `search`, `fetch`, `audit-log`, `batch`,
//! `bib`, and `csl` subcommands have landed. Phase 3 wires `serve` to
//! the rmcp-based MCP server in `doiget-mcp`.

use clap::{Parser, Subcommand};

/// `doiget provenance ...` action selector. Ships only the v1→v2
/// migration in Slice 4 (ADR-0024); further actions (e.g. `compact`,
/// `rotate`) land in later slices.
#[derive(Subcommand, Debug)]
enum ProvenanceAction {
    /// Migrate the provenance log from v1 to v2 (one-shot, idempotent,
    /// dry-runnable per ADR-0024).
    Migrate {
        /// Preview the migration without touching disk. Prints the
        /// resulting [`MigrationReport`](doiget_core::provenance::MigrationReport)
        /// summary and exits.
        #[arg(long)]
        dry_run: bool,
    },
}

#[derive(Parser, Debug)]
#[command(
    name = "doiget",
    version,
    about = "Fetch academic papers via official Open Access APIs.",
    long_about = "doiget is an OA-first paper fetcher and stdio MCP server.\n\
                  See README.md and docs/ for the full specification.\n\
                  This is the Phase 0 skeleton; subcommands are not yet implemented."
)]
struct Cli {
    #[command(subcommand)]
    command: Option<Command>,
}

#[derive(Subcommand, Debug)]
enum Command {
    /// Fetch a single paper PDF by DOI or arXiv id.
    Fetch {
        /// DOI (e.g. "10.1234/example") or arXiv id (e.g. "arXiv:2401.12345").
        ref_: String,
        /// Build a fetch plan and emit it as JSON on stdout without
        /// touching the network, the store, or the provenance log
        /// (ADR-0022). The `plan.pdf_sources[].candidate_hosts` list is
        /// the static allowlist for the resolver, not a prediction of
        /// the single host the real fetch would hit (ADR-0022 §4).
        #[arg(long)]
        dry_run: bool,
    },
    /// Fetch many refs from a newline-separated text file.
    Batch {
        /// Path to a file containing one ref per line.
        path: String,
        /// Emit one fetch-plan JSON envelope per ref on stdout without
        /// touching the network, the store, or the provenance log
        /// (ADR-0022). Per-ref parse failures still cause a non-zero
        /// exit so a malformed batch is visible.
        #[arg(long)]
        dry_run: bool,
    },
    /// Show metadata for a stored entry.
    Info {
        /// DOI or arXiv id.
        ref_: String,
    },
    /// List the most recently fetched entries.
    ListRecent {
        /// Number of entries to show.
        #[arg(default_value_t = 10)]
        limit: usize,
    },
    /// Search the local store by title / authors / venue.
    Search {
        /// Query string.
        query: String,
    },
    /// Export an entry as BibTeX.
    Bib {
        /// DOI or arXiv id.
        ref_: String,
    },
    /// Export an entry as CSL JSON.
    Csl {
        /// DOI or arXiv id.
        ref_: String,
    },
    /// Inspect or verify the provenance log.
    AuditLog {
        /// Recompute the SHA-256 hash chain and report mismatches.
        #[arg(long)]
        verify: bool,
    },
    /// Provenance-log lifecycle operations (migrate v1 → v2 per
    /// ADR-0024).
    Provenance {
        #[command(subcommand)]
        action: ProvenanceAction,
    },
    /// Run as an MCP server over stdio.
    Serve,
    /// Show or doctor the resolved configuration.
    Config {
        /// `show` / `path` / `doctor`
        action: String,
    },
    /// Expand a DOI's citation neighborhood via OpenAlex (BFS,
    /// ADR-0010 hard caps). Requires `--features citation` AND
    /// `DOIGET_ENABLE_OPENALEX` in env.
    #[cfg(feature = "citation")]
    Graph {
        /// DOI seed. arXiv ids are rejected (OpenAlex's
        /// `referenced_works` is DOI-keyed).
        ref_: String,
        /// Max BFS depth (1..=3). Default = 3 (ADR-0010 maximum).
        #[arg(long)]
        depth: Option<u32>,
        /// Max total nodes (1..=100). Default = 100.
        #[arg(long)]
        total: Option<u32>,
        /// Max children per parent (1..=20). Default = 20.
        #[arg(long)]
        per_paper: Option<u32>,
    },
}

#[tokio::main]
async fn main() -> anyhow::Result<()> {
    // Logging — strictly to stderr. See docs/SECURITY.md §3 / ADR-0001.
    tracing_subscriber::fmt()
        .with_writer(std::io::stderr)
        .with_env_filter(tracing_subscriber::EnvFilter::from_default_env())
        .init();

    let cli = Cli::parse();

    match cli.command {
        None => {
            anyhow::bail!("no subcommand. Run `doiget --help` for available commands.");
        }
        // Phase 1 subcommands. All command modules live in the library half
        // of this crate (see `src/lib.rs`) so integration tests can drive them
        // in-process.
        Some(Command::AuditLog { verify }) => doiget_cli::commands::audit_log::run(verify),
        Some(Command::Provenance { action }) => match action {
            ProvenanceAction::Migrate { dry_run } => {
                doiget_cli::commands::provenance::migrate(dry_run)
            }
        },
        Some(Command::Config { action }) => doiget_cli::commands::config::run(action),
        Some(Command::Info { ref_ }) => doiget_cli::commands::info::run(ref_),
        Some(Command::ListRecent { limit }) => doiget_cli::commands::list_recent::run(limit),
        Some(Command::Search { query }) => doiget_cli::commands::search::run(query),
        Some(Command::Fetch { ref_, dry_run }) => {
            doiget_cli::commands::fetch::run_with_options(ref_, dry_run).await
        }
        Some(Command::Batch { path, dry_run }) => {
            doiget_cli::commands::batch::run_with_options(path, dry_run).await
        }
        Some(Command::Bib { ref_ }) => doiget_cli::commands::bib::run(ref_),
        Some(Command::Csl { ref_ }) => doiget_cli::commands::csl::run(ref_),
        // Phase 3 (MCP foundation). The MCP server runs on stdio per
        // ADR-0001. The `tracing_subscriber` installed at the top of
        // `main` is already redirected to stderr, so any rmcp / tool
        // tracing output will not collide with JSON-RPC frames on stdout.
        // See docs/SECURITY.md §3 / docs/MCP_TOOLS.md §8.
        Some(Command::Serve) => {
            let profile = doiget_core::CapabilityProfile::from_env()?;
            doiget_mcp::Server::new(profile).run().await
        }
        // Phase 4 / Slice 16. Feature-gated to keep default release
        // binaries free of the OpenAlex-only citation walker.
        #[cfg(feature = "citation")]
        Some(Command::Graph {
            ref_,
            depth,
            total,
            per_paper,
        }) => doiget_cli::commands::graph::run(ref_, depth, total, per_paper).await,
    }
}