doctrine 0.17.0

Project tooling CLI
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
1001
1002
1003
1004
1005
1006
1007
1008
1009
1010
1011
1012
1013
1014
1015
1016
1017
1018
1019
1020
1021
1022
1023
1024
1025
1026
1027
1028
1029
1030
1031
1032
1033
1034
1035
1036
1037
1038
1039
1040
1041
1042
1043
1044
1045
1046
1047
1048
1049
1050
1051
1052
1053
1054
1055
1056
1057
1058
1059
1060
1061
1062
1063
1064
1065
1066
1067
1068
1069
1070
1071
1072
1073
1074
1075
1076
1077
1078
1079
1080
1081
1082
1083
1084
1085
1086
1087
1088
1089
1090
1091
1092
1093
1094
1095
1096
1097
1098
1099
1100
1101
1102
1103
1104
1105
1106
1107
1108
1109
1110
1111
1112
1113
1114
1115
1116
1117
1118
1119
1120
1121
1122
1123
1124
1125
1126
1127
1128
1129
1130
1131
1132
1133
1134
1135
1136
1137
1138
1139
1140
1141
1142
1143
1144
1145
1146
1147
1148
1149
1150
1151
1152
1153
1154
1155
1156
1157
1158
1159
1160
1161
1162
1163
1164
1165
1166
1167
1168
1169
1170
1171
1172
1173
1174
1175
1176
1177
1178
1179
1180
1181
1182
1183
1184
1185
1186
1187
1188
1189
1190
1191
1192
1193
1194
1195
1196
1197
1198
1199
1200
1201
1202
1203
1204
1205
1206
1207
1208
1209
1210
1211
1212
1213
1214
1215
1216
1217
1218
1219
1220
1221
1222
1223
1224
1225
1226
1227
1228
1229
1230
1231
1232
1233
1234
1235
1236
1237
1238
1239
1240
1241
1242
1243
1244
1245
1246
1247
1248
1249
1250
1251
1252
1253
1254
1255
1256
1257
1258
1259
1260
1261
1262
1263
1264
1265
1266
1267
1268
1269
1270
1271
1272
1273
1274
1275
1276
1277
1278
1279
1280
1281
1282
1283
1284
1285
1286
1287
1288
1289
1290
1291
1292
1293
1294
1295
1296
1297
1298
1299
1300
1301
1302
1303
1304
1305
1306
1307
1308
1309
1310
1311
1312
1313
1314
1315
1316
1317
1318
1319
1320
1321
1322
1323
1324
1325
1326
1327
1328
1329
1330
1331
1332
1333
1334
1335
1336
1337
1338
1339
1340
1341
1342
1343
1344
1345
1346
1347
1348
1349
1350
1351
1352
1353
1354
1355
1356
1357
1358
1359
1360
1361
1362
1363
1364
1365
1366
1367
1368
1369
1370
1371
1372
1373
1374
1375
1376
1377
1378
1379
1380
1381
1382
1383
1384
1385
1386
1387
1388
1389
1390
1391
1392
1393
1394
1395
1396
1397
1398
1399
1400
1401
1402
1403
1404
1405
1406
1407
1408
1409
1410
1411
1412
1413
1414
1415
1416
1417
1418
1419
1420
1421
1422
1423
1424
1425
1426
1427
1428
1429
1430
1431
1432
1433
1434
1435
1436
1437
1438
1439
1440
1441
1442
1443
1444
1445
// SPDX-License-Identifier: GPL-3.0-only
//! Native doctor checks — `RawLabel`, `TomlParse`, `ProseCite`.
//!
//! Each check emits [`Finding`]s at [`Severity::Warning`] (never breaks the
//! build, D4). These are disjoint from the existing #1 `IdIntegrity` /
//! #2 `RelationIntegrity` (§ `RelationIntegrity`'s `IllegalRows`) checks — different
//! data sources, different severities.

use std::collections::BTreeSet;
use std::path::Path;

use crate::catalog::diagnostic::CatalogDiagnostic;
use crate::catalog::hydrate::{CatalogEdgeLabel, CatalogKey};
use crate::catalog::scan::{self, ScanMode};
use crate::finding::{Category, Finding};
use crate::mcp_server::dispatch::{
    TOOL_DISPATCH_CONCLUDE_PHASE, TOOL_DISPATCH_IMPORT, TOOL_DISPATCH_REAP,
};

// ---------------------------------------------------------------------------
// RawLabel — #6 catalog-scan check
// ---------------------------------------------------------------------------

/// Scan the catalog graph for `CatalogEdgeLabel::Raw` edges.
///
/// ## R7 guarantee (disjointness from #2 `RelationIntegrity`'s `IllegalRows`)
///
/// This check operates over the **hydrated catalog** (`scan_catalog`), which
/// carries `CatalogEdgeLabel::Raw` for every memory-originating edge that
/// survived the catalog build (free-text relation labels). #2
/// `RelationIntegrity`'s `IllegalRows` scan READS the raw TOML `[[relation]]`
/// block directly, catching hand-edited off-table `(source, label)` rows in
/// numbered entities — a different data source. The two checks never overlap
/// on the same finding, and their severities differ (`RawLabel` → Warning vs
/// `IllegalRows` → Error).
pub(crate) fn raw_label_findings(root: &Path) -> Vec<Finding> {
    let Ok(catalog) = crate::catalog::hydrate::scan_catalog(root, ScanMode::default()) else {
        return Vec::new();
    };

    catalog
        .edges
        .iter()
        .filter_map(|edge| {
            if let CatalogEdgeLabel::Raw(label) = &edge.label {
                Some(Finding {
                    category: Category::RawLabel,
                    entity: Some(edge.source.canonical()),
                    message: format!("raw label: {label}"),
                })
            } else {
                None
            }
        })
        .collect()
}

// ---------------------------------------------------------------------------
// TomlParse — #7 facet+plan.toml parse check
// ---------------------------------------------------------------------------

/// Scan for malformed facet TOML and unparseable plan.toml files.
///
/// ## F-10 guarantee (facet-only split)
///
/// Facet-level diagnostics (estimate / value / risk) are routed here.
/// Entity-level diagnostics (identity, status, relation) belong to #1
/// `IdIntegrity` and are NOT duplicated. The split: this function filters
/// `scan_entities` diagnostics to ONLY those whose `field` is one of
/// `["estimate", "value", "facet"]` (facet-keyed) plus the plan.toml
/// probe — entity-level diags are excluded.
pub(crate) fn toml_parse_findings(root: &Path) -> Vec<Finding> {
    let mut findings = Vec::new();
    let mut diagnostics = Vec::new();

    // (A) Facet TOML diagnostics from the entity scan.
    // Discard the scan result — we only need the diagnostics vec.
    let _scan_result = scan::scan_entities(root, &mut diagnostics, ScanMode::default());
    for d in diagnostics {
        if is_facet_diagnostic(&d) {
            findings.push(Finding {
                category: Category::TomlParse,
                entity: d.entity_key.as_ref().map(CatalogKey::canonical),
                message: d.message,
            });
        }
    }

    // (B) Plan.toml probe — walk .doctrine/slice/*/plan.toml.
    let slice_root = root.join(".doctrine/slice");
    let Ok(entries) = std::fs::read_dir(&slice_root) else {
        return findings;
    };

    for entry in entries.flatten() {
        let path = entry.path();
        // R4: skip slug symlinks — only numeric dirs carry plan.toml.
        if path.is_symlink() {
            continue;
        }
        let plan_path = path.join("plan.toml");
        if !plan_path.is_file() {
            continue;
        }
        let Ok(text) = std::fs::read_to_string(&plan_path) else {
            continue;
        };
        // Try to parse as a TOML document (any valid TOML passes).
        if text.parse::<toml::Table>().is_err() {
            findings.push(Finding {
                category: Category::TomlParse,
                entity: Some(plan_path.display().to_string()),
                message: String::from("unparseable plan.toml"),
            });
        }
    }

    findings
}

/// Facet-level diagnostic gate (F-10): `true` when the diagnostic's `field` is
/// `Some("estimate")`, `Some("value")`, or `Some("facet")` — the three
/// per-entity facet keys read by `scan::read_facets`. Entity-level diagnostics
/// (missing/invalid identity keys, status/title parse failures) have `field:
/// None` and are excluded.
fn is_facet_diagnostic(d: &CatalogDiagnostic) -> bool {
    matches!(d.field.as_deref(), Some("estimate" | "value" | "facet"))
}

// ---------------------------------------------------------------------------
// ProseCite — #8 unresolved citation scanner
// ---------------------------------------------------------------------------

/// Scan authored `.md` prose for unresolved 2-part (`KIND-NNN`) citations.
///
/// Skips:
/// - D11-disposable prose (handover, audit, notes, runtime state, etc.)
/// - Fenced code blocks
/// - Inline code spans (backtick-wrapped)
/// - `*-SENTINEL` tokens
/// - Doc-local refs (`[A-Z][0-9]+` without dash)
/// - 3-part tokens (`KIND-NNN-XX`) — owns the 3-part false-negative (F-4)
/// - Unknown-prefix tokens (silent skip, no bail)
///
/// Emits a `ProseCite` Warning for each known-prefix 2-part citation that does
/// not resolve to an entity on disk.
pub(crate) fn prose_cite_findings(
    root: &Path,
    verbose: bool,
    with_terminal_slices: bool,
) -> Vec<Finding> {
    let mut findings = Vec::new();

    // Collect terminal slice IDs when exclusion is active.
    let terminal_slices: BTreeSet<u32> = if with_terminal_slices {
        BTreeSet::new()
    } else {
        collect_terminal_slice_ids(root)
    };

    // Anchor to the authored corpus (design §5.5/§7 D11): scan only
    // `.doctrine/**`, never the whole repo — a whole-repo glob descends into
    // nested worktree copies (`.dispatch/`, `.worktrees/`) that each carry a
    // full `.doctrine/`, inflating findings with duplicates. Copies nested under
    // `.doctrine/state/` are additionally caught by `is_disposable_prose`.
    let pattern = root.join(".doctrine/**/*.md");
    let Some(pattern_str) = pattern.to_str() else {
        return findings;
    };

    let Ok(entries) = glob::glob(pattern_str) else {
        return findings;
    };

    // Compile regexes once — patterns are constant, fallible compile returns empty.
    let Ok(re) = regex::Regex::new(r"[A-Z]{2,}-[0-9]+(-[A-Za-z0-9]+)*") else {
        return findings;
    };
    let Ok(doc_local_re) = regex::Regex::new(r"^[A-Z][0-9]+$") else {
        return findings;
    };

    for entry in entries.flatten() {
        if !entry.is_file() {
            continue;
        }
        if is_disposable_prose_d11(&entry) {
            continue;
        }
        // Terminal-slice exclusion: skip prose under closed/abandoned slices
        // unless --with-terminal-slices or --json.
        if !terminal_slices.is_empty() && is_terminal_slice_file(&entry, &terminal_slices) {
            continue;
        }
        // Non-verbose path exclusions: glossary.md exemplar placeholders and
        // .doctrine/rfc/ runtime instrumentation are never actionable citations.
        if !verbose && is_non_verbose_prose_skip(&entry) {
            continue;
        }

        let Ok(text) = std::fs::read_to_string(&entry) else {
            continue;
        };

        let mut in_fence = false;
        for line in text.lines() {
            let trimmed = line.trim();
            if trimmed.starts_with("```") {
                in_fence = !in_fence;
                continue;
            }
            if in_fence {
                continue;
            }

            // Extract regions outside inline code (backtick) spans.
            let segments = non_code_segments(line);
            for seg in &segments {
                for m in re.find_iter(seg) {
                    let token = m.as_str();

                    // Skip *-SENTINEL.
                    if token.ends_with("-SENTINEL") {
                        continue;
                    }
                    // Skip doc-local refs (single-letter prefix + digit, no dash).
                    if doc_local_re.is_match(token) {
                        continue;
                    }

                    // Classify by hyphen-count.
                    let hyphen_count = token.matches('-').count();
                    if hyphen_count >= 2 {
                        // 3-part (or longer) — F-4: owns the false-negative.
                        continue;
                    }
                    // 2-part: KIND-NNN.
                    let Some((prefix, _num)) = token.split_once('-') else {
                        continue; // unreachable given the regex shape
                    };

                    // Unknown prefix — silent skip.
                    if crate::integrity::kind_by_prefix(prefix).is_none() {
                        continue;
                    }

                    // Known prefix but unresolved — emit finding.
                    if crate::integrity::ensure_ref_resolves(root, token).is_err() {
                        findings.push(Finding {
                            category: Category::ProseCite,
                            entity: Some(entry.display().to_string()),
                            message: format!("unresolved citation: {token}"),
                        });
                    }
                }
            }
        }
    }

    findings
}

/// Collect the set of slice ids whose status is terminal (`done` or `abandoned`).
/// Reads each slice's TOML to extract `status`; a missing or unreadable TOML is
/// silently skipped (no finding — that's the `TomlParse` check's job).
fn collect_terminal_slice_ids(root: &Path) -> BTreeSet<u32> {
    let mut ids = BTreeSet::new();
    let slice_root = root.join(".doctrine/slice");
    let Ok(entries) = std::fs::read_dir(&slice_root) else {
        return ids;
    };
    for entry in entries.flatten() {
        let path = entry.path();
        if !path.is_dir() || path.is_symlink() {
            continue;
        }
        let Some(name) = path.file_name().and_then(|n| n.to_str()) else {
            continue;
        };
        let Ok(id): Result<u32, _> = name.parse() else {
            continue;
        };
        let toml_path = path.join(format!("slice-{name}.toml"));
        let Ok(text) = std::fs::read_to_string(&toml_path) else {
            continue;
        };
        let Ok(table) = text.parse::<toml::Table>() else {
            continue;
        };
        let Some(status) = table.get("status").and_then(|v| v.as_str()) else {
            continue;
        };
        if status == "done" || status == "abandoned" {
            ids.insert(id);
        }
    }
    ids
}

/// Return `true` when `path` lives under `.doctrine/slice/NNN/` where NNN is in
/// the terminal set.
fn is_terminal_slice_file(path: &Path, terminal: &BTreeSet<u32>) -> bool {
    // Walk up from the file to find the slice directory.
    let mut current = path.parent();
    while let Some(parent) = current {
        if let Some(grandparent) = parent.parent()
            && grandparent.ends_with(".doctrine/slice")
        {
            if let Some(name) = parent.file_name().and_then(|n| n.to_str())
                && let Ok(id) = name.parse::<u32>()
            {
                return terminal.contains(&id);
            }
            break;
        }
        current = parent.parent();
    }
    false
}

/// D11 scan scope: extends [`crate::integrity::is_disposable_prose`] with
/// additional exclusions for the prose-cite scanner (audit.md, inquisition.md,
/// notes.md, research/ directory, .doctrine/review/**).
fn is_disposable_prose_d11(path: &Path) -> bool {
    if crate::integrity::is_disposable_prose(path) {
        return true;
    }
    let name = path.file_name().and_then(|n| n.to_str()).unwrap_or("");
    if matches!(name, "audit.md" | "inquisition.md" | "notes.md") {
        return true;
    }
    let path_str = path.to_string_lossy();
    path_str.contains("/research/") || path_str.contains(".doctrine/review/")
}

/// Non-verbose prose-cite skip: glossary.md (exemplar placeholders like POL-123,
/// STD-123) and `.doctrine/rfc/` (runtime instrumentation, gitignored).
fn is_non_verbose_prose_skip(path: &Path) -> bool {
    let name = path.file_name().and_then(|n| n.to_str()).unwrap_or("");
    if name == "glossary.md" {
        return true;
    }
    path.to_string_lossy().contains(".doctrine/rfc/")
}

/// Return the line's text regions outside inline backtick code spans.
/// Splits on `` ` `` and keeps only even-indexed segments (outside backticks).
fn non_code_segments(line: &str) -> Vec<&str> {
    let parts: Vec<&str> = line.split('`').collect();
    parts
        .into_iter()
        .enumerate()
        .filter_map(|(i, s)| if i % 2 == 0 { Some(s) } else { None })
        .collect()
}

// ---------------------------------------------------------------------------
// AgentConformance — #9 worker tool-surface lint (SL-198, RSK-225)
// ---------------------------------------------------------------------------

/// Authored agent-def scan roots. The **authored** source of truth — NOT the
/// installed `.claude/agents` derived copy (which is regenerated by
/// `doctrine install` and would let a tampered install pass a clean source).
const AGENT_SCAN_ROOTS: [&str; 2] = ["install/agents", ".doctrine/agents"];
/// Frontmatter marker key gating a def's role. MANDATORY (deny-by-default).
const ROLE_MARKER_KEY: &str = "doctrine-role";
const ROLE_WORKER: &str = "worker";
const ROLE_ORCHESTRATOR: &str = "orchestrator";
/// The single MCP token a confined **worker** may hold — its only sanctioned
/// jail-wall bypass (SL-198 keystone). Any other `mcp__*` token is an escape.
const TOOL_ALLOWED: &str = "mcp__doctrine__worker_commit";
const MCP_TOKEN_PREFIX: &str = "mcp__";
/// The `mcp__<server>__` prefix the funnel tokens carry once fully qualified.
/// STD-001: the orchestrator allowlist is COMPOSED from this prefix and the §B
/// bare-name constants ([`TOOL_DISPATCH_IMPORT`] …), never re-typed here.
const MCP_DOCTRINE_PREFIX: &str = "mcp__doctrine__";

/// The fully-qualified MCP tokens a confined agent of `role` may hold — the
/// role-keyed allowlist. A `worker` holds only [`TOOL_ALLOWED`]; an
/// `orchestrator` holds only the three funnel tokens (composed from the §B
/// [`crate::mcp_server::dispatch`] bare-name constants). Any other role yields
/// the empty set (no `mcp__*` token permitted).
fn allowed_mcp_tokens(role: &str) -> Vec<String> {
    match role {
        ROLE_WORKER => vec![TOOL_ALLOWED.to_string()],
        ROLE_ORCHESTRATOR => [
            TOOL_DISPATCH_IMPORT,
            TOOL_DISPATCH_CONCLUDE_PHASE,
            TOOL_DISPATCH_REAP,
        ]
        .iter()
        .map(|bare| format!("{MCP_DOCTRINE_PREFIX}{bare}"))
        .collect(),
        _ => Vec::new(),
    }
}

/// #9 — Worker tool-surface conformance lint (SL-198, RSK-225).
///
/// Because an `mcp__*` write tool bypasses the SL-182 `PreToolUse` jail wall,
/// jail completeness now depends on every confined agent-def's `tools:` surface
/// being pinned. This is a pure static scan of the **authored** agent-defs under
/// [`AGENT_SCAN_ROOTS`] (never runtime state, never the installed `.claude/`
/// copy). Two Error-severity rules (deny-by-default, plan EX-2):
///
/// 1. **Marker mandatory.** A def (a `.md` whose YAML frontmatter carries a
///    `name:` field) MUST declare `doctrine-role: worker|orchestrator`. An
///    unmarked def is a failure, not a doc gap — an unmarked worker granting a
///    writable MCP token would otherwise slip an allow-by-marker lint.
/// 2. **Role-keyed tool allowlist.** A marked def's `tools:` may contain no
///    `mcp__*` token outside its role's sanctioned set ([`allowed_mcp_tokens`]):
///    a `worker` may hold only [`TOOL_ALLOWED`]; an `orchestrator` only the three
///    funnel tokens. This also rejects a bare `mcp__doctrine` server grant (it is
///    `mcp__`-prefixed and in no role's set). Ceiling, not floor — extras are
///    rejected, but the set's tokens need not all be present.
///
/// Absent scan roots yield zero findings (downstream projects without an
/// `install/` tree are clean).
pub(crate) fn agent_conformance_findings(root: &Path) -> Vec<Finding> {
    let mut findings = Vec::new();
    for rel in AGENT_SCAN_ROOTS {
        collect_agent_def_findings(&root.join(rel), root, &mut findings);
    }
    findings
}

/// Recursively walk `dir` for `*.md` agent-defs, appending findings. `root` is
/// the corpus root, used to render a stable relative path in each finding.
fn collect_agent_def_findings(dir: &Path, root: &Path, findings: &mut Vec<Finding>) {
    let Ok(entries) = std::fs::read_dir(dir) else {
        return; // absent root — not an error (downstream-safe)
    };
    for entry in entries.flatten() {
        let path = entry.path();
        if path.is_dir() {
            collect_agent_def_findings(&path, root, findings);
            continue;
        }
        if path.extension().and_then(|e| e.to_str()) != Some("md") {
            continue;
        }
        let Ok(text) = std::fs::read_to_string(&path) else {
            continue;
        };
        let Some(fm) = frontmatter(&text) else {
            continue; // no frontmatter (e.g. AGENTS.md readme) — not an agent-def
        };
        let Some(name) = fm_scalar(fm, "name") else {
            continue; // frontmatter without a name is not an agent-def
        };
        let _ = name;
        let rel = path
            .strip_prefix(root)
            .unwrap_or(&path)
            .display()
            .to_string();

        // Rule 1 — marker mandatory (deny-by-default). Thread the validated role
        // out into Rule 2's role-keyed allowlist.
        let role = match fm_scalar(fm, ROLE_MARKER_KEY) {
            Some(role) if role == ROLE_WORKER || role == ROLE_ORCHESTRATOR => role,
            Some(role) => {
                findings.push(Finding {
                    category: Category::AgentConformance,
                    entity: Some(rel.clone()),
                    message: format!(
                        "invalid `{ROLE_MARKER_KEY}: {role}` (expected `{ROLE_WORKER}` or `{ROLE_ORCHESTRATOR}`)"
                    ),
                });
                continue;
            }
            None => {
                findings.push(Finding {
                    category: Category::AgentConformance,
                    entity: Some(rel.clone()),
                    message: format!("missing mandatory `{ROLE_MARKER_KEY}` marker"),
                });
                continue;
            }
        };

        // Rule 2 — role-keyed tool allowlist (marked defs only). Ceiling, not
        // floor: reject any `mcp__*` token outside the role's set; do NOT require
        // the set's tokens to be present.
        let allowed = allowed_mcp_tokens(role);
        for tok in fm_tool_tokens(fm) {
            if tok.starts_with(MCP_TOKEN_PREFIX) && !allowed.iter().any(|a| a == &tok) {
                findings.push(Finding {
                    category: Category::AgentConformance,
                    entity: Some(rel.clone()),
                    message: format!(
                        "forbidden MCP token `{tok}` — a `{role}` agent-def may hold only [{}]",
                        allowed.join(", ")
                    ),
                });
            }
        }
    }
}

/// Return the raw YAML frontmatter block (between the leading `---` fences), or
/// `None` if the file does not open with a frontmatter fence.
fn frontmatter(text: &str) -> Option<&str> {
    let rest = text.strip_prefix("---")?;
    // The opening fence must be its own line.
    let rest = rest
        .strip_prefix('\n')
        .or_else(|| rest.strip_prefix("\r\n"))?;
    let end = rest.find("\n---")?;
    Some(&rest[..end])
}

/// Extract a scalar frontmatter value for `key` (`key: value` on one line),
/// trimmed. Returns `None` if absent or empty.
fn fm_scalar<'a>(fm: &'a str, key: &str) -> Option<&'a str> {
    for line in fm.lines() {
        let line = line.trim();
        if let Some(rest) = line.strip_prefix(key)
            && let Some(val) = rest.trim_start().strip_prefix(':')
        {
            let val = val.trim();
            if !val.is_empty() {
                return Some(val);
            }
        }
    }
    None
}

/// Extract the `tools:` list as individual tokens. Handles both the inline
/// comma form (`tools: A, B, C`) and the YAML block-list form (`- A` lines).
fn fm_tool_tokens(fm: &str) -> Vec<String> {
    let mut lines = fm.lines();
    let mut tokens = Vec::new();
    while let Some(line) = lines.next() {
        let trimmed = line.trim();
        let Some(rest) = trimmed.strip_prefix("tools") else {
            continue;
        };
        let Some(val) = rest.trim_start().strip_prefix(':') else {
            continue;
        };
        let val = val.trim();
        if val.is_empty() {
            // Block-list form: consume following `- item` lines.
            for l in lines.by_ref() {
                let lt = l.trim();
                if let Some(item) = lt.strip_prefix('-') {
                    let item = item.trim();
                    if !item.is_empty() {
                        tokens.push(item.to_string());
                    }
                } else if !lt.is_empty() {
                    break; // end of the block list
                }
            }
        } else {
            tokens.extend(
                val.split(',')
                    .map(|t| t.trim().to_string())
                    .filter(|t| !t.is_empty()),
            );
        }
        break;
    }
    tokens
}

// ---------------------------------------------------------------------------
// Tests
// ---------------------------------------------------------------------------

#[cfg(test)]
#[expect(clippy::unwrap_used, clippy::expect_used, reason = "test code")]
mod tests {
    use super::*;
    use crate::catalog::hydrate::{
        Catalog, CatalogEdge, CatalogEdgeLabel, CatalogKey, EdgeTarget, Units,
    };
    use crate::catalog::test_helpers::*;
    use std::collections::BTreeMap;
    use std::path::PathBuf;

    // ------------------------------------------------------------------
    // ProseCite test helpers
    // ------------------------------------------------------------------

    /// Set up a temp dir with a real entity so `ensure_ref_resolves` can succeed.
    fn seed_entity_dir(root: &Path, prefix: &str, id: u32) {
        use crate::integrity::kind_by_prefix;
        let Some(kref) = kind_by_prefix(prefix) else {
            return;
        };
        let dir = root.join(kref.kind.dir).join(format!("{id:03}"));
        std::fs::create_dir_all(&dir).unwrap();
    }

    /// Write prose to a `.md` file in `root` and run `prose_cite_findings`.
    /// The fixture lives under the authored corpus (`.doctrine/**`) so the
    /// anchored scan (RV-185 F-3) reaches it — a durable, non-disposable file.
    /// Defaults to `with_terminal_slices=true` so existing tests are unaffected.
    fn scan_md(root: &Path, prose: &str) -> Vec<Finding> {
        let file = root.join(".doctrine/slice/099/slice-099.md");
        std::fs::create_dir_all(file.parent().unwrap()).unwrap();
        std::fs::write(&file, prose).unwrap();
        prose_cite_findings(root, true, true)
    }

    /// Root with SL-001 seeded so `SL-001` resolves.
    fn root_with_sl001() -> tempfile::TempDir {
        let dir = tmp();
        seed_entity_dir(dir.path(), "SL", 1);
        dir
    }

    fn test_units() -> Units {
        Units {
            estimation: "espresso_shots".to_string(),
            value: "magic_beans".to_string(),
        }
    }

    // ------------------------------------------------------------------
    // RawLabel tests
    // ------------------------------------------------------------------

    /// Build a pure in-memory catalog with one numbered edge (Validated)
    /// and one raw edge (memory-originating).
    fn catalog_with_raw_edge() -> Catalog {
        let dir = tmp();
        let root = dir.path();
        // One numbered entity.
        seed_slice(root, 1, &[("references(implements)", &["REQ-001"])]);
        let mut catalog = Catalog::from_scanned(
            root,
            &[crate::catalog::scan::ScannedEntity {
                key: crate::catalog::scan::EntityKey {
                    prefix: "SL",
                    id: 1,
                },
                kind: &crate::slice::SLICE_KIND,
                status: Some("proposed".to_string()),
                title: "SL-001".to_string(),
                outbound: vec![crate::relation::RelationEdge::with_role(
                    crate::relation::RelationLabel::References,
                    Some(crate::relation::Role::Implements),
                    "REQ-001".to_string(),
                )],
                estimate: None,
                value: None,
                risk: None,
                tags: vec![],
                body: None,
            }],
            &[],
            &BTreeMap::new(),
            test_units(),
        );
        // Inject a Raw edge.
        catalog.edges.push(CatalogEdge {
            source: CatalogKey::Memory("mem_aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa".to_string()),
            label: CatalogEdgeLabel::Raw("custom-label".to_string()),
            role: None,
            descriptor: None,
            target: EdgeTarget::UnvalidatedText {
                raw: "free text target".to_string(),
            },
            origin: crate::catalog::hydrate::EdgeOrigin {
                file: PathBuf::from("memory.toml"),
                field: Some("custom-label".to_string()),
            },
        });
        catalog
    }

    #[test]
    fn raw_label_finds_raw_edge() {
        let catalog = catalog_with_raw_edge();
        // Build findings by iterating the catalog edges directly (same logic as
        // raw_label_findings but operating on the in-memory catalog).
        let findings: Vec<Finding> = catalog
            .edges
            .iter()
            .filter_map(|edge| {
                if let CatalogEdgeLabel::Raw(label) = &edge.label {
                    Some(Finding {
                        category: Category::RawLabel,
                        entity: Some(edge.source.canonical()),
                        message: format!("raw label: {label}"),
                    })
                } else {
                    None
                }
            })
            .collect();

        assert_eq!(findings.len(), 1, "one Raw edge should produce one finding");
        let f = &findings[0];
        assert_eq!(f.category, Category::RawLabel);
        assert_eq!(f.category.severity(), crate::finding::Severity::Warning);
        assert!(f.entity.as_deref().unwrap().starts_with("mem_"));
        assert!(f.message.contains("custom-label"));
    }

    #[test]
    fn raw_label_skips_validated_edge() {
        let catalog = catalog_with_raw_edge();
        // The numbered edge (Validated) should NOT produce a finding.
        let has_validated_finding = catalog
            .edges
            .iter()
            .any(|edge| matches!(&edge.label, CatalogEdgeLabel::Validated(_)));
        assert!(has_validated_finding, "fixture has a Validated edge");
        // But raw_label_findings should only flag Raw edges.
        let raw_count = catalog
            .edges
            .iter()
            .filter(|e| matches!(e.label, CatalogEdgeLabel::Raw(_)))
            .count();
        assert_eq!(raw_count, 1);
    }

    #[test]
    fn raw_label_verify_disjointness_from_illegal_rows() {
        // Conceptual: RawLabel operates over catalog edges; IllegalRows operates
        // over raw TOML text. The finding category and severity differ.
        let f = Finding {
            category: Category::RawLabel,
            entity: Some("mem_xxx".into()),
            message: "raw label: test".into(),
        };
        assert_eq!(f.category.severity(), crate::finding::Severity::Warning);
        // RelationIntegrity is Error severity — different.
        assert_eq!(
            Category::RelationIntegrity.severity(),
            crate::finding::Severity::Error
        );
    }

    // ------------------------------------------------------------------
    // TomlParse tests
    // ------------------------------------------------------------------

    #[test]
    fn toml_parse_flags_malformed_facet() {
        let dir = tmp();
        let root = dir.path();
        // Seed an ADR with a malformed estimate facet (non-table).
        write(
            root,
            ".doctrine/adr/001/adr-001.toml",
            "id = 1\nslug = \"a1\"\ntitle = \"A1\"\nstatus = \"accepted\"\n\
             created = \"2026-01-01\"\nupdated = \"2026-01-01\"\n\
             estimate = 7\n",
        );
        write(root, ".doctrine/adr/001/adr-001.md", "body\n");

        let findings = toml_parse_findings(root);
        // The malformed "estimate = 7" (not a table) is a facet diagnostic.
        assert!(
            !findings.is_empty(),
            "malformed facet should produce TomlParse findings"
        );
        for f in &findings {
            assert_eq!(f.category, Category::TomlParse);
            assert_eq!(f.category.severity(), crate::finding::Severity::Warning);
            assert!(
                f.message.contains("must be a table") || f.message.contains("estimate"),
                "message should mention estimate: {}",
                f.message
            );
        }
    }

    #[test]
    fn toml_parse_flags_malformed_plan_toml() {
        let dir = tmp();
        let root = dir.path();
        // Create a slice dir with a broken plan.toml.
        let plan_dir = root.join(".doctrine/slice/001");
        std::fs::create_dir_all(&plan_dir).unwrap();
        std::fs::write(plan_dir.join("plan.toml"), "this is not valid toml [[[[").unwrap();

        let findings = toml_parse_findings(root);
        let plan_findings: Vec<&Finding> = findings
            .iter()
            .filter(|f| f.message.contains("unparseable plan.toml"))
            .collect();
        assert_eq!(
            plan_findings.len(),
            1,
            "malformed plan.toml should produce one finding"
        );
        let f = plan_findings[0];
        assert!(f.entity.as_deref().unwrap().contains("plan.toml"));
    }

    #[test]
    fn toml_parse_skips_symlink_slice_dirs() {
        let dir = tmp();
        let root = dir.path();
        // Create a real numeric dir with a malformed plan.toml.
        let real_dir = root.join(".doctrine/slice/001");
        std::fs::create_dir_all(&real_dir).unwrap();
        std::fs::write(real_dir.join("plan.toml"), "not toml [[").unwrap();
        // Create a slug symlink. No plan.toml should be read from the symlink.
        let symlink = root.join(".doctrine/slice/001-my-slug");
        #[cfg(unix)]
        std::os::unix::fs::symlink("001", &symlink).unwrap();
        #[cfg(not(unix))]
        {
            // On non-unix, skip the symlink test; fallback to a file.
            std::fs::write(&symlink, "not a symlink").unwrap();
        }

        let findings = toml_parse_findings(root);
        // Should have exactly one plan.toml finding (from 001, not the symlink).
        let plan_count = findings
            .iter()
            .filter(|f| f.message.contains("unparseable plan.toml"))
            .count();
        // On unix, symlink is skipped; on non-unix, the symlink test doesn't apply.
        if cfg!(unix) {
            assert_eq!(plan_count, 1, "symlink slice dir must be skipped");
        }
    }

    #[test]
    fn toml_parse_excludes_entity_level_diagnostics() {
        let dir = tmp();
        let root = dir.path();
        // Malformed entity (not a facet issue) — entity-level parse failure.
        write(
            root,
            ".doctrine/slice/002/slice-002.toml",
            "id = notanumber\n",
        );
        write(root, ".doctrine/slice/002/slice-002.md", "scope\n");

        let findings = toml_parse_findings(root);
        // Entity-level diags have field=None; they must NOT appear in TomlParse.
        for f in &findings {
            assert!(
                !f.message.contains("notanumber"),
                "entity-level diag must not appear: {}",
                f.message
            );
        }
    }

    #[test]
    fn toml_parse_severity_is_warning() {
        assert_eq!(
            Category::TomlParse.severity(),
            crate::finding::Severity::Warning
        );
    }

    // ------------------------------------------------------------------
    // ProseCite tests
    // ------------------------------------------------------------------

    #[test]
    fn prose_cite_severity_is_warning() {
        assert_eq!(
            Category::ProseCite.severity(),
            crate::finding::Severity::Warning
        );
    }

    // --- VT-1 classes ---

    #[test]
    fn prose_cite_resolved_2part_produces_no_finding() {
        let dir = root_with_sl001();
        let root = dir.path();
        let findings = scan_md(root, "see SL-001 for details");
        assert!(
            findings.is_empty(),
            "resolved SL-001 should produce no finding: {findings:?}"
        );
    }

    #[test]
    fn prose_cite_dangling_2part_produces_finding() {
        let dir = root_with_sl001();
        let root = dir.path();
        // SL-999 is a known prefix but no entity exists.
        let findings = scan_md(root, "see SL-999 for details");
        assert_eq!(findings.len(), 1, "dangling SL-999 should produce finding");
        let f = &findings[0];
        assert_eq!(f.category, Category::ProseCite);
        assert!(f.message.contains("SL-999"), "message: {}", f.message);
        assert!(f.message.contains("unresolved citation"));
    }

    #[test]
    fn prose_cite_code_span_inline_no_finding() {
        let dir = root_with_sl001();
        let root = dir.path();
        // SL-001 is inside a backtick span — excluded.
        let findings = scan_md(root, "use `SL-001` as reference");
        assert!(
            findings.is_empty(),
            "backtick-wrapped SL-001 should be skipped: {findings:?}"
        );
    }

    #[test]
    fn prose_cite_code_span_fenced_block_no_finding() {
        let dir = root_with_sl001();
        let root = dir.path();
        let prose = "before\n```\nSL-999\n```\nafter";
        let findings = scan_md(root, prose);
        assert!(
            findings.is_empty(),
            "fenced block SL-999 should be skipped: {findings:?}"
        );
    }

    #[test]
    fn prose_cite_fenced_block_toggle_respects_boundaries() {
        let dir = root_with_sl001();
        let root = dir.path();
        // Fence toggles: SL-999 outside fence → finding; SL-888 inside → skipped.
        let prose = "SL-999 is outside\n```\nSL-888\n```\nSL-999 again outside";
        let findings = scan_md(root, prose);
        // Two copies of SL-999 outside fence — one finding per unique token per file?
        // No, two independent finding entries (same token, same file).
        assert_eq!(findings.len(), 2, "both SL-999 outside fence reported");
        for f in &findings {
            assert!(f.message.contains("SL-999"));
        }
    }

    #[test]
    fn prose_cite_sentinel_no_finding() {
        let dir = root_with_sl001();
        let root = dir.path();
        let findings = scan_md(root, "BOOT-SENTINEL: doctrine-governance-snapshot");
        assert!(
            findings.is_empty(),
            "BOOT-SENTINEL should be skipped: {findings:?}"
        );
    }

    #[test]
    fn prose_cite_doc_local_no_finding() {
        let dir = root_with_sl001();
        let root = dir.path();
        // D1, R1, C1, Q1 — single-letter prefix + digit, no dash.
        let findings = scan_md(root, "see D1 and R1 and C1 and Q1");
        assert!(
            findings.is_empty(),
            "doc-local refs should be skipped: {findings:?}"
        );
    }

    #[test]
    fn prose_cite_3part_no_finding() {
        let dir = root_with_sl001();
        let root = dir.path();
        let findings = scan_md(root, "see DEC-005-C and DEC-010-06");
        assert!(
            findings.is_empty(),
            "3-part tokens should be skipped: {findings:?}"
        );
    }

    #[test]
    fn prose_cite_compound_3part_no_finding() {
        let dir = root_with_sl001();
        let root = dir.path();
        // SL-048-style is 3-part (SL, 048, style).
        let findings = scan_md(root, "the SL-048-style pattern");
        assert!(
            findings.is_empty(),
            "SL-048-style (3-part) should be skipped: {findings:?}"
        );
    }

    #[test]
    fn prose_cite_unknown_prefix_no_finding() {
        let dir = root_with_sl001();
        let root = dir.path();
        // SHA and PHASE are not known kind prefixes.
        let findings = scan_md(root, "use SHA-256 for PHASE-03 hashing");
        assert!(
            findings.is_empty(),
            "unknown prefix tokens should be skipped: {findings:?}"
        );
    }

    // --- VT-2: maximal token ---

    #[test]
    fn prose_cite_maximal_token_no_submatch() {
        let dir = root_with_sl001();
        let root = dir.path();
        // DEC-005-C matches as DEC-005-C (3-part), NOT as DEC-005 (2-part).
        // DEC-005 is a known prefix but would be a dangling if matched separately.
        let findings = scan_md(root, "the DEC-005-C encoding");
        assert!(
            findings.is_empty(),
            "DEC-005-C must be 3-part only, not 2-part DEC-005: {findings:?}"
        );
    }

    // --- VT-3: D11 scope ---

    #[test]
    fn prose_cite_skips_audit_md() {
        let dir = root_with_sl001();
        let root = dir.path();
        let file = root.join(".doctrine/slice/001/audit.md");
        std::fs::create_dir_all(file.parent().unwrap()).unwrap();
        std::fs::write(&file, "dangling SL-999 here\n").unwrap();
        let findings = prose_cite_findings(root, true, true);
        assert!(
            findings.is_empty(),
            "audit.md should be skipped: {findings:?}"
        );
    }

    #[test]
    fn prose_cite_skips_inquisition_md() {
        let dir = root_with_sl001();
        let root = dir.path();
        let file = root.join(".doctrine/slice/001/inquisition.md");
        std::fs::create_dir_all(file.parent().unwrap()).unwrap();
        std::fs::write(&file, "dangling SL-999 here\n").unwrap();
        let findings = prose_cite_findings(root, true, true);
        assert!(
            findings.is_empty(),
            "inquisition.md should be skipped: {findings:?}"
        );
    }

    #[test]
    fn prose_cite_skips_notes_md() {
        let dir = root_with_sl001();
        let root = dir.path();
        let file = root.join(".doctrine/slice/001/notes.md");
        std::fs::create_dir_all(file.parent().unwrap()).unwrap();
        std::fs::write(&file, "dangling SL-999 here\n").unwrap();
        let findings = prose_cite_findings(root, true, true);
        assert!(
            findings.is_empty(),
            "notes.md should be skipped: {findings:?}"
        );
    }

    #[test]
    fn prose_cite_skips_research_dir() {
        let dir = root_with_sl001();
        let root = dir.path();
        let file = root.join(".doctrine/research/notes/some.md");
        std::fs::create_dir_all(file.parent().unwrap()).unwrap();
        std::fs::write(&file, "dangling SL-999 here\n").unwrap();
        let findings = prose_cite_findings(root, true, true);
        assert!(
            findings.is_empty(),
            "research/ should be skipped: {findings:?}"
        );
    }

    #[test]
    fn prose_cite_skips_doctrine_review_dir() {
        let dir = root_with_sl001();
        let root = dir.path();
        let file = root.join(".doctrine/review/042/summary.md");
        std::fs::create_dir_all(file.parent().unwrap()).unwrap();
        std::fs::write(&file, "dangling SL-999 here\n").unwrap();
        let findings = prose_cite_findings(root, true, true);
        assert!(
            findings.is_empty(),
            ".doctrine/review/ should be skipped: {findings:?}"
        );
    }

    #[test]
    fn prose_cite_scans_non_skipped_file() {
        let dir = root_with_sl001();
        let root = dir.path();
        let file = root.join(".doctrine/slice/002/slice-002.md");
        std::fs::create_dir_all(file.parent().unwrap()).unwrap();
        std::fs::write(&file, "dangling SL-999 here\n").unwrap();
        let findings = prose_cite_findings(root, true, true);
        assert_eq!(
            findings.len(),
            1,
            "authored prose should produce finding: {findings:?}"
        );
        assert!(findings[0].message.contains("SL-999"));
    }

    #[test]
    fn prose_cite_skips_handover_md() {
        let dir = root_with_sl001();
        let root = dir.path();
        let file = root.join(".doctrine/slice/001/handover.md");
        std::fs::create_dir_all(file.parent().unwrap()).unwrap();
        std::fs::write(&file, "dangling SL-999 here\n").unwrap();
        let findings = prose_cite_findings(root, true, true);
        assert!(
            findings.is_empty(),
            "handover.md should be skipped via is_disposable_prose: {findings:?}"
        );
    }

    #[test]
    fn prose_cite_skips_doctrine_state() {
        let dir = root_with_sl001();
        let root = dir.path();
        let file = root.join(".doctrine/state/slice/001/phase-01.md");
        std::fs::create_dir_all(file.parent().unwrap()).unwrap();
        std::fs::write(&file, "dangling SL-999 here\n").unwrap();
        let findings = prose_cite_findings(root, true, true);
        assert!(
            findings.is_empty(),
            ".doctrine/state should be skipped via is_disposable_prose: {findings:?}"
        );
    }

    // --- ProseCite path exclusions (IMP-252) ---

    #[test]
    fn prose_cite_skips_glossary_md_when_not_verbose() {
        let dir = root_with_sl001();
        let root = dir.path();
        let file = root.join(".doctrine/glossary.md");
        std::fs::create_dir_all(file.parent().unwrap()).unwrap();
        std::fs::write(&file, "dangling POL-123 here\n").unwrap();
        let findings = prose_cite_findings(root, false, true);
        assert!(
            findings.is_empty(),
            "glossary.md should be skipped when not verbose: {findings:?}"
        );
    }

    #[test]
    fn prose_cite_shows_glossary_md_when_verbose() {
        let dir = root_with_sl001();
        let root = dir.path();
        let file = root.join(".doctrine/glossary.md");
        std::fs::create_dir_all(file.parent().unwrap()).unwrap();
        std::fs::write(&file, "dangling POL-123 here\n").unwrap();
        let findings = prose_cite_findings(root, true, true);
        assert_eq!(
            findings.len(),
            1,
            "glossary.md should be scanned when verbose: {findings:?}"
        );
        assert!(findings[0].message.contains("POL-123"));
    }

    #[test]
    fn prose_cite_skips_rfc_dir_when_not_verbose() {
        let dir = root_with_sl001();
        let root = dir.path();
        let file = root.join(".doctrine/rfc/011/case-notes.md");
        std::fs::create_dir_all(file.parent().unwrap()).unwrap();
        std::fs::write(&file, "dangling RV-217 here\n").unwrap();
        let findings = prose_cite_findings(root, false, true);
        assert!(
            findings.is_empty(),
            "rfc/ should be skipped when not verbose: {findings:?}"
        );
    }

    #[test]
    fn prose_cite_shows_rfc_when_verbose() {
        let dir = root_with_sl001();
        let root = dir.path();
        let file = root.join(".doctrine/rfc/011/case-notes.md");
        std::fs::create_dir_all(file.parent().unwrap()).unwrap();
        std::fs::write(&file, "dangling RV-217 here\n").unwrap();
        let findings = prose_cite_findings(root, true, true);
        assert_eq!(
            findings.len(),
            1,
            "rfc/ should be scanned when verbose: {findings:?}"
        );
        assert!(findings[0].message.contains("RV-217"));
    }

    // --- ProseCite terminal-slice exclusion ---

    /// Helper: seed a slice TOML with `status` at `root/.doctrine/slice/NNN/`.
    fn seed_slice_toml(root: &Path, id: u32, status: &str) {
        let dir = root.join(format!(".doctrine/slice/{id:03}"));
        std::fs::create_dir_all(&dir).unwrap();
        std::fs::write(
            dir.join(format!("slice-{id:03}.toml")),
            format!("id = {id}\nslug = \"s{id}\"\ntitle = \"S{id}\"\nstatus = \"{status}\"\n"),
        )
        .unwrap();
    }

    #[test]
    fn prose_cite_skips_done_slice_by_default() {
        let dir = tmp();
        let root = dir.path();
        seed_slice_toml(root, 200, "done");
        // Write prose with a dangling citation into the done slice.
        let file = root.join(".doctrine/slice/200/slice-200.md");
        std::fs::write(&file, "dangling DEC-005 here\n").unwrap();
        // Without terminal slices — should skip.
        let findings = prose_cite_findings(root, true, false);
        assert!(
            findings.is_empty(),
            "done slice should be skipped by default: {findings:?}"
        );
        // With terminal slices — should find it.
        let findings_with = prose_cite_findings(root, true, true);
        assert_eq!(
            findings_with.len(),
            1,
            "done slice should be included with --with-terminal-slices: {findings_with:?}"
        );
        assert!(findings_with[0].message.contains("DEC-005"));
    }

    #[test]
    fn prose_cite_skips_abandoned_slice_by_default() {
        let dir = tmp();
        let root = dir.path();
        seed_slice_toml(root, 201, "abandoned");
        let file = root.join(".doctrine/slice/201/slice-201.md");
        std::fs::write(&file, "dangling DEC-006 here\n").unwrap();
        let findings = prose_cite_findings(root, true, false);
        assert!(
            findings.is_empty(),
            "abandoned slice should be skipped by default: {findings:?}"
        );
        let findings_with = prose_cite_findings(root, true, true);
        assert_eq!(findings_with.len(), 1);
    }

    #[test]
    fn prose_cite_scans_non_terminal_slice_always() {
        let dir = tmp();
        let root = dir.path();
        seed_slice_toml(root, 202, "started");
        let file = root.join(".doctrine/slice/202/slice-202.md");
        std::fs::write(&file, "dangling DEC-007 here\n").unwrap();
        // Without terminal slices — non-terminal, so still scanned.
        let findings = prose_cite_findings(root, true, false);
        assert_eq!(
            findings.len(),
            1,
            "non-terminal slice should always be scanned: {findings:?}"
        );
    }

    #[test]
    fn prose_cite_terminal_exclusion_only_affects_slice_dir() {
        let dir = tmp();
        let root = dir.path();
        seed_slice_toml(root, 203, "done");
        // Prose outside the slice dir (e.g. in an ADR) should still be scanned.
        std::fs::create_dir_all(root.join(".doctrine/adr/001")).unwrap();
        std::fs::write(
            root.join(".doctrine/adr/001/adr-001.md"),
            "dangling DEC-008 here\n",
        )
        .unwrap();
        let findings = prose_cite_findings(root, true, false);
        assert_eq!(
            findings.len(),
            1,
            "non-slice prose should still be scanned: {findings:?}"
        );
        assert!(findings[0].message.contains("DEC-008"));
    }

    // ------------------------------------------------------------------
    // AgentConformance tests (#9, SL-198 RSK-225)
    // ------------------------------------------------------------------

    /// Write an agent-def under a scan root and return the corpus root dir.
    fn write_def(root: &Path, rel: &str, body: &str) {
        let path = root.join("install/agents").join(rel);
        std::fs::create_dir_all(path.parent().unwrap()).unwrap();
        std::fs::write(&path, body).unwrap();
    }

    #[test]
    fn agent_conformance_passes_marked_worker_with_only_worker_commit() {
        let dir = tmp();
        write_def(
            dir.path(),
            "claude/dispatch-worker.md",
            "---\nname: dispatch-worker\ndoctrine-role: worker\ntools: Read, Edit, Write, Bash, mcp__doctrine__worker_commit\n---\nbody\n",
        );
        let findings = agent_conformance_findings(dir.path());
        assert!(
            findings.is_empty(),
            "pinned worker should pass: {findings:?}"
        );
    }

    #[test]
    fn agent_conformance_fails_unmarked_def() {
        let dir = tmp();
        write_def(
            dir.path(),
            "claude/dispatch-worker.md",
            "---\nname: dispatch-worker\ntools: Read, Edit, mcp__doctrine__worker_commit\n---\nbody\n",
        );
        let findings = agent_conformance_findings(dir.path());
        assert_eq!(
            findings.len(),
            1,
            "unmarked def is a failure (deny-by-default)"
        );
        assert_eq!(findings[0].category, Category::AgentConformance);
        assert_eq!(
            findings[0].category.severity(),
            crate::finding::Severity::Error
        );
        assert!(findings[0].message.contains("doctrine-role"));
    }

    #[test]
    fn agent_conformance_fails_marked_def_with_extra_mcp_token() {
        let dir = tmp();
        write_def(
            dir.path(),
            "claude/rogue.md",
            "---\nname: rogue\ndoctrine-role: worker\ntools: Read, mcp__doctrine__worker_commit, mcp__github__create_pr\n---\nbody\n",
        );
        let findings = agent_conformance_findings(dir.path());
        assert_eq!(findings.len(), 1, "extra writable MCP token must fail");
        assert!(findings[0].message.contains("mcp__github__create_pr"));
    }

    #[test]
    fn agent_conformance_fails_bare_server_grant() {
        let dir = tmp();
        write_def(
            dir.path(),
            "claude/bare.md",
            "---\nname: bare\ndoctrine-role: worker\ntools: Read, mcp__doctrine\n---\nbody\n",
        );
        let findings = agent_conformance_findings(dir.path());
        assert_eq!(
            findings.len(),
            1,
            "bare mcp__doctrine server grant must fail"
        );
        assert!(findings[0].message.contains("mcp__doctrine"));
    }

    #[test]
    fn agent_conformance_passes_orchestrator_with_only_funnel_tokens() {
        let dir = tmp();
        write_def(
            dir.path(),
            "claude/dispatch-orchestrator.md",
            "---\nname: dispatch-orchestrator\ndoctrine-role: orchestrator\ntools: Read, Bash, Agent, mcp__doctrine__dispatch_import, mcp__doctrine__dispatch_conclude_phase, mcp__doctrine__dispatch_reap\n---\nbody\n",
        );
        let findings = agent_conformance_findings(dir.path());
        assert!(
            findings.is_empty(),
            "sanctioned orchestrator (three funnel tokens) should pass the allowlist: {findings:?}"
        );
    }

    #[test]
    fn agent_conformance_fails_orchestrator_with_extra_mcp_token() {
        let dir = tmp();
        write_def(
            dir.path(),
            "claude/rogue-orchestrator.md",
            "---\nname: rogue-orchestrator\ndoctrine-role: orchestrator\ntools: Read, mcp__doctrine__dispatch_import, mcp__github__create_pr\n---\nbody\n",
        );
        let findings = agent_conformance_findings(dir.path());
        assert_eq!(
            findings.len(),
            1,
            "an orchestrator's extra writable MCP token must fail the allowlist"
        );
        assert!(findings[0].message.contains("mcp__github__create_pr"));
    }

    #[test]
    fn agent_conformance_fails_orchestrator_with_bare_server_grant() {
        let dir = tmp();
        write_def(
            dir.path(),
            "claude/bare-orchestrator.md",
            "---\nname: bare-orchestrator\ndoctrine-role: orchestrator\ntools: Read, mcp__doctrine\n---\nbody\n",
        );
        let findings = agent_conformance_findings(dir.path());
        assert_eq!(
            findings.len(),
            1,
            "a bare mcp__doctrine grant is in no role's allowlist and must fail"
        );
        assert!(findings[0].message.contains("mcp__doctrine"));
    }

    #[test]
    fn agent_conformance_fails_orchestrator_holding_worker_commit() {
        let dir = tmp();
        write_def(
            dir.path(),
            "claude/overreaching-orchestrator.md",
            "---\nname: overreaching-orchestrator\ndoctrine-role: orchestrator\ntools: Read, mcp__doctrine__dispatch_import, mcp__doctrine__worker_commit\n---\nbody\n",
        );
        let findings = agent_conformance_findings(dir.path());
        assert_eq!(
            findings.len(),
            1,
            "the worker's token is NOT in the orchestrator's allowlist and must fail"
        );
        assert!(findings[0].message.contains("mcp__doctrine__worker_commit"));
    }

    #[test]
    fn agent_conformance_skips_readme_without_frontmatter() {
        let dir = tmp();
        write_def(
            dir.path(),
            "AGENTS.md",
            "# Agents\n\nJust a readme, no frontmatter.\n",
        );
        let findings = agent_conformance_findings(dir.path());
        assert!(
            findings.is_empty(),
            "non-frontmatter readme is not a def: {findings:?}"
        );
    }

    #[test]
    fn agent_conformance_empty_when_roots_absent() {
        let dir = tmp();
        let findings = agent_conformance_findings(dir.path());
        assert!(
            findings.is_empty(),
            "absent scan roots yield no findings (downstream-safe)"
        );
    }
}