doctrine 0.14.0

Project tooling CLI
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
1001
1002
1003
1004
1005
1006
1007
1008
1009
1010
1011
1012
1013
1014
1015
1016
1017
1018
1019
1020
1021
1022
1023
1024
1025
1026
1027
1028
1029
1030
1031
1032
1033
1034
1035
1036
1037
1038
1039
1040
1041
1042
1043
1044
1045
1046
1047
1048
1049
1050
1051
1052
1053
1054
1055
1056
1057
1058
1059
1060
1061
1062
1063
1064
1065
1066
1067
1068
1069
1070
1071
1072
1073
1074
1075
1076
1077
1078
1079
1080
1081
1082
1083
1084
1085
1086
1087
1088
1089
1090
1091
1092
1093
1094
1095
1096
1097
1098
1099
1100
1101
1102
1103
1104
1105
1106
1107
1108
1109
1110
1111
1112
1113
1114
1115
1116
1117
1118
1119
1120
1121
1122
1123
1124
1125
1126
1127
1128
1129
1130
1131
1132
1133
1134
1135
1136
1137
1138
1139
1140
1141
1142
1143
1144
1145
1146
1147
1148
1149
1150
1151
1152
1153
1154
1155
1156
1157
1158
1159
1160
1161
1162
1163
1164
1165
1166
1167
1168
1169
1170
1171
1172
1173
1174
1175
1176
1177
1178
1179
1180
1181
1182
1183
1184
1185
1186
1187
1188
1189
1190
1191
1192
1193
1194
1195
1196
1197
1198
1199
1200
1201
1202
1203
1204
1205
1206
1207
1208
1209
1210
1211
1212
1213
1214
1215
1216
1217
1218
1219
1220
1221
1222
1223
1224
1225
1226
1227
1228
1229
1230
1231
1232
1233
1234
1235
1236
1237
1238
1239
1240
1241
1242
1243
1244
1245
1246
1247
1248
1249
1250
1251
1252
1253
1254
1255
1256
1257
1258
1259
1260
1261
1262
1263
1264
1265
1266
1267
1268
1269
1270
1271
1272
1273
1274
1275
1276
1277
1278
1279
1280
1281
1282
1283
1284
1285
1286
1287
1288
1289
1290
1291
1292
1293
1294
1295
1296
1297
1298
1299
1300
1301
1302
1303
1304
1305
1306
1307
1308
1309
1310
1311
1312
1313
1314
1315
1316
1317
1318
1319
1320
1321
1322
1323
1324
1325
1326
1327
1328
1329
1330
1331
1332
1333
1334
1335
1336
1337
1338
1339
1340
1341
1342
1343
1344
1345
1346
1347
1348
1349
1350
1351
1352
1353
1354
1355
1356
1357
1358
1359
1360
1361
1362
1363
1364
1365
1366
1367
1368
1369
1370
1371
1372
1373
1374
1375
1376
1377
1378
1379
1380
1381
1382
1383
1384
1385
1386
1387
1388
1389
1390
1391
1392
1393
1394
1395
1396
1397
1398
1399
1400
1401
1402
1403
1404
1405
1406
1407
1408
1409
1410
1411
1412
1413
1414
1415
1416
1417
1418
1419
1420
1421
1422
1423
1424
1425
1426
1427
1428
1429
1430
1431
1432
1433
1434
1435
1436
1437
1438
1439
1440
1441
1442
1443
1444
1445
1446
1447
1448
1449
1450
1451
1452
1453
1454
1455
1456
1457
1458
1459
1460
1461
1462
1463
1464
1465
1466
1467
1468
1469
1470
1471
1472
1473
1474
1475
1476
1477
1478
1479
1480
1481
1482
1483
1484
1485
1486
1487
1488
1489
1490
1491
1492
1493
1494
1495
1496
1497
1498
1499
1500
1501
1502
1503
1504
1505
1506
1507
1508
1509
1510
1511
1512
1513
1514
1515
1516
1517
1518
1519
1520
1521
1522
1523
1524
1525
1526
1527
1528
1529
1530
1531
1532
1533
1534
1535
1536
1537
1538
1539
1540
1541
1542
1543
1544
1545
1546
1547
1548
1549
1550
1551
1552
1553
1554
1555
1556
1557
1558
1559
1560
1561
1562
1563
1564
1565
1566
1567
1568
1569
1570
1571
1572
1573
1574
1575
1576
1577
1578
1579
1580
1581
1582
1583
1584
1585
1586
1587
1588
1589
1590
1591
1592
1593
1594
1595
1596
1597
1598
1599
1600
1601
1602
1603
1604
1605
1606
1607
1608
1609
1610
1611
1612
1613
1614
1615
1616
1617
1618
1619
1620
1621
1622
1623
1624
1625
1626
1627
1628
1629
1630
1631
1632
1633
1634
1635
1636
1637
1638
1639
1640
1641
1642
1643
1644
1645
1646
1647
1648
1649
1650
1651
1652
1653
1654
1655
1656
1657
1658
1659
1660
1661
1662
1663
1664
1665
1666
1667
1668
1669
1670
1671
1672
1673
1674
1675
1676
1677
1678
1679
1680
1681
1682
1683
1684
1685
1686
1687
1688
1689
1690
1691
1692
1693
1694
1695
1696
1697
1698
1699
1700
1701
1702
1703
1704
1705
1706
1707
1708
1709
1710
1711
1712
1713
1714
1715
1716
1717
1718
1719
1720
1721
1722
1723
1724
1725
1726
1727
1728
1729
1730
1731
1732
1733
1734
1735
1736
1737
1738
1739
1740
1741
1742
1743
1744
1745
1746
1747
1748
1749
1750
1751
1752
1753
1754
1755
1756
1757
1758
1759
1760
1761
1762
1763
1764
1765
1766
1767
1768
1769
1770
1771
1772
1773
1774
1775
1776
1777
1778
1779
1780
1781
1782
1783
1784
1785
1786
1787
1788
1789
1790
1791
1792
1793
1794
1795
1796
1797
1798
1799
1800
1801
1802
1803
1804
1805
1806
1807
1808
1809
1810
1811
1812
1813
1814
1815
1816
1817
1818
1819
1820
1821
1822
1823
1824
1825
1826
1827
1828
1829
1830
1831
1832
1833
1834
1835
1836
1837
1838
1839
1840
1841
1842
1843
1844
1845
1846
1847
1848
1849
1850
1851
1852
1853
1854
1855
1856
1857
1858
1859
1860
1861
1862
1863
1864
1865
1866
1867
1868
1869
1870
1871
1872
1873
1874
1875
1876
1877
1878
1879
1880
1881
1882
1883
1884
1885
1886
1887
1888
1889
1890
1891
1892
1893
1894
1895
1896
1897
1898
1899
1900
1901
1902
1903
1904
1905
1906
1907
1908
1909
1910
1911
1912
1913
1914
1915
1916
1917
1918
1919
1920
1921
1922
1923
1924
1925
1926
1927
1928
1929
1930
1931
1932
1933
1934
1935
1936
1937
1938
1939
1940
1941
1942
1943
1944
1945
1946
1947
1948
1949
1950
1951
1952
1953
1954
1955
1956
1957
1958
1959
1960
1961
1962
1963
1964
1965
1966
1967
1968
1969
1970
1971
1972
1973
1974
1975
1976
1977
1978
1979
1980
1981
1982
1983
1984
1985
1986
1987
1988
1989
1990
1991
1992
1993
1994
1995
1996
1997
1998
1999
2000
2001
2002
2003
2004
2005
2006
2007
2008
2009
2010
2011
2012
2013
2014
2015
2016
2017
2018
2019
2020
2021
2022
2023
2024
2025
2026
2027
2028
2029
2030
2031
2032
2033
2034
2035
2036
2037
2038
2039
2040
2041
2042
2043
2044
2045
2046
2047
2048
2049
2050
2051
2052
2053
2054
2055
2056
2057
2058
2059
2060
2061
2062
2063
2064
2065
2066
2067
2068
2069
2070
2071
2072
2073
2074
2075
2076
2077
2078
2079
2080
2081
2082
2083
2084
2085
2086
2087
2088
2089
2090
2091
2092
2093
2094
2095
2096
2097
2098
2099
2100
2101
2102
2103
2104
2105
2106
2107
2108
2109
2110
2111
2112
2113
2114
2115
2116
2117
2118
2119
2120
2121
2122
2123
2124
2125
2126
2127
2128
2129
2130
2131
2132
2133
2134
2135
2136
2137
2138
2139
2140
2141
2142
2143
2144
2145
2146
2147
2148
2149
2150
2151
2152
2153
2154
2155
2156
2157
2158
2159
2160
2161
2162
2163
2164
2165
2166
2167
2168
2169
2170
2171
2172
2173
2174
2175
2176
2177
2178
2179
2180
2181
2182
2183
2184
2185
2186
2187
2188
2189
2190
2191
2192
2193
2194
2195
2196
2197
2198
2199
2200
2201
2202
2203
2204
2205
2206
2207
2208
2209
2210
2211
2212
2213
2214
2215
2216
2217
2218
2219
2220
2221
2222
2223
2224
2225
2226
2227
2228
2229
2230
2231
2232
2233
2234
2235
2236
2237
2238
2239
2240
2241
2242
2243
2244
2245
2246
2247
2248
2249
2250
2251
2252
2253
2254
2255
2256
2257
2258
2259
2260
2261
2262
2263
2264
2265
2266
2267
2268
2269
2270
2271
2272
2273
2274
2275
2276
2277
2278
2279
2280
2281
2282
2283
2284
2285
2286
2287
2288
2289
2290
2291
2292
2293
2294
2295
2296
2297
2298
2299
2300
2301
2302
2303
2304
2305
2306
2307
2308
2309
2310
2311
2312
2313
2314
2315
2316
2317
2318
2319
2320
2321
2322
2323
2324
2325
2326
2327
2328
2329
2330
2331
2332
2333
2334
2335
2336
2337
2338
2339
2340
2341
2342
2343
2344
2345
2346
2347
2348
2349
2350
2351
2352
2353
2354
2355
2356
2357
2358
2359
2360
2361
2362
2363
2364
2365
2366
2367
2368
2369
2370
2371
2372
2373
2374
2375
2376
2377
2378
2379
2380
2381
2382
2383
2384
2385
2386
2387
2388
2389
2390
2391
2392
2393
2394
2395
2396
2397
2398
2399
2400
2401
2402
2403
2404
2405
2406
2407
2408
2409
2410
2411
2412
2413
2414
2415
2416
2417
2418
2419
2420
2421
2422
2423
2424
2425
2426
2427
2428
2429
2430
2431
2432
2433
2434
2435
2436
2437
2438
2439
2440
2441
2442
2443
2444
2445
2446
2447
2448
2449
2450
2451
2452
2453
2454
2455
2456
2457
2458
2459
2460
2461
2462
2463
2464
2465
2466
2467
2468
2469
2470
2471
2472
2473
2474
2475
2476
2477
2478
2479
2480
2481
2482
2483
2484
2485
2486
2487
2488
2489
2490
2491
2492
2493
2494
2495
2496
2497
2498
2499
2500
2501
2502
2503
2504
2505
2506
2507
2508
2509
2510
2511
2512
2513
2514
2515
2516
2517
2518
2519
2520
2521
2522
2523
2524
2525
2526
2527
2528
2529
2530
2531
2532
2533
2534
2535
2536
2537
2538
2539
2540
2541
2542
2543
2544
2545
2546
2547
2548
2549
2550
2551
2552
2553
2554
2555
2556
2557
2558
2559
2560
2561
2562
2563
2564
2565
2566
2567
2568
2569
2570
2571
2572
2573
2574
2575
2576
2577
2578
2579
2580
2581
2582
2583
2584
2585
2586
2587
2588
2589
2590
2591
2592
2593
2594
2595
2596
2597
2598
2599
2600
2601
2602
2603
2604
2605
2606
2607
2608
2609
2610
2611
2612
2613
2614
2615
2616
2617
2618
2619
2620
2621
2622
2623
2624
2625
2626
2627
2628
2629
2630
2631
2632
2633
2634
2635
2636
2637
2638
2639
2640
2641
2642
2643
2644
2645
2646
2647
2648
2649
2650
2651
2652
2653
2654
2655
2656
2657
2658
2659
2660
2661
2662
2663
2664
2665
2666
2667
2668
2669
2670
2671
2672
2673
2674
2675
2676
2677
2678
2679
2680
2681
2682
2683
2684
2685
2686
2687
2688
2689
2690
2691
2692
2693
2694
2695
2696
2697
2698
2699
2700
2701
// SPDX-License-Identifier: GPL-3.0-only
//! Mutable runtime state under `.doctrine/state/` — phase tracking.
//!
//! Separate from the scaffold engine by *contract*, not IO (slice-004 D3): the
//! engine writes write-once authored filesets and refuses clobber; this module
//! owns idempotently-rewritten runtime state, which is disposable and
//! gitignored. The two share only `fsutil` primitives. State paths are always
//! computed from the slice id — the convenience symlink is never followed
//! (id is identity).

use std::collections::BTreeSet;
use std::fs;
use std::io::{ErrorKind, Write};
use std::path::{Path, PathBuf};

use crate::kinds::DISPATCH_REF_PREFIX;
use anyhow::Context;
use clap::ValueEnum;
use serde::Deserialize;
use toml_edit::Item;

use crate::boundary::{BoundaryRow, Provenance};
use crate::fsutil;
// `Plan`/`PlanPhase` are now an engine-tier leaf (`crate::plan`, SL-016): the
// state layer depends *down* on a neutral home, not up into the slice-CLI
// module — the slice↔state cycle is gone (ADR-001). Residual debt: `PhaseStatus`
// below still carries `clap::ValueEnum`, so the arg parser leaks into the state
// layer — out of scope here; split the CLI enum from the stored value if a
// second consumer appears.
use crate::plan::{Plan, PlanPhase};

/// Slice-scoped runtime-state tree, relative to the project root.
const STATE_SLICE_DIR: &str = ".doctrine/state/slice";
/// The authored slice tree — only the convenience `phases` symlink is written
/// here (gitignored); never tracking data (the runtime/authored boundary).
const SLICE_DIR: &str = ".doctrine/slice";

/// A phase's runtime lifecycle status. The CLI surface for `slice phase`.
#[derive(Debug, Clone, Copy, PartialEq, Eq, clap::ValueEnum)]
pub(crate) enum PhaseStatus {
    Planned,
    #[value(name = "in_progress")]
    InProgress,
    Completed,
    Blocked,
}

impl PhaseStatus {
    pub(crate) fn as_str(self) -> &'static str {
        match self {
            Self::Planned => "planned",
            Self::InProgress => "in_progress",
            Self::Completed => "completed",
            Self::Blocked => "blocked",
        }
    }
}

/// A phase's contribution to the rollup before folding: either a parsed status
/// string from its `phase-NN.toml`, or a `.md`-only crash-partial whose status
/// is unreadable. Keeping the latter explicit is what stops `total` from
/// silently shrinking (design D8 / R-F4).
#[derive(Debug, PartialEq, Eq)]
pub(crate) enum StemStatus<'a> {
    Toml(&'a str),
    MissingToml,
}

/// Derived completion counts for one slice's phases. Every phase lands in exactly
/// one bucket, so the total is their sum and can never undercount; `unknown` (a
/// status string outside the `PhaseStatus` set) and `missing_toml` are kept
/// distinct so corruption is surfaced, not folded into "incomplete" (R-F3/R-F5).
#[derive(Debug, Default, Clone, PartialEq, Eq)]
pub(crate) struct PhaseRollup {
    pub(crate) planned: u32,
    pub(crate) in_progress: u32,
    pub(crate) completed: u32,
    pub(crate) blocked: u32,
    pub(crate) unknown: u32,
    pub(crate) missing_toml: u32,
}

impl PhaseRollup {
    /// Every phase, summed across buckets — never undercounts.
    pub(crate) fn total(&self) -> u32 {
        self.planned
            + self.in_progress
            + self.completed
            + self.blocked
            + self.unknown
            + self.missing_toml
    }

    /// Phases whose tracking is malformed (unrecognised status or unreadable
    /// `.toml`) — surfaced as the `?N` marker, and suppresses divergence.
    pub(crate) fn anomalies(&self) -> u32 {
        self.unknown + self.missing_toml
    }
}

/// Fold per-stem statuses into the bucket counts. Pure — no IO, no clock. An
/// unrecognised status string lands in `unknown`; a `.md`-only stem in
/// `missing_toml`. The known set is `PhaseStatus`'s own value names, so the
/// vocabulary has one source (no parallel string list).
pub(crate) fn fold_rollup(stems: &[StemStatus<'_>]) -> PhaseRollup {
    let mut r = PhaseRollup::default();
    for stem in stems {
        match stem {
            StemStatus::MissingToml => r.missing_toml += 1,
            StemStatus::Toml(s) => match PhaseStatus::from_str(s, false) {
                Ok(PhaseStatus::Planned) => r.planned += 1,
                Ok(PhaseStatus::InProgress) => r.in_progress += 1,
                Ok(PhaseStatus::Completed) => r.completed += 1,
                Ok(PhaseStatus::Blocked) => r.blocked += 1,
                Err(_) => r.unknown += 1,
            },
        }
    }
    r
}

/// What `init_phases` did, so the caller reports drift without this module
/// printing. `created`: phases that got a file written this run (new, or a
/// crash-partial phase completed per-file). `orphan`: tracking on disk whose
/// plan phase is gone (a rename presents as orphan + a fresh phase) — reported,
/// never silently consumed. `pruned`: orphans removed under explicit `--prune`.
#[derive(Debug, Default, PartialEq, Eq)]
pub(crate) struct InitReport {
    pub created: Vec<String>,
    pub orphan: Vec<String>,
    pub pruned: Vec<String>,
}

/// Canonical state path for a slice's phase tracking, computed from the id.
pub(crate) fn phases_dir(project_root: &Path, slice_id: u32) -> PathBuf {
    project_root
        .join(STATE_SLICE_DIR)
        .join(format!("{slice_id:03}"))
        .join("phases")
}

/// Validate a phase id and derive its filename stem. Enforces the canonical
/// `PHASE-<digits>` form (→ `phase-NN`), which both makes the derivation total
/// and rejects filesystem-unsafe input — empty, separators, `..`, leading dot
/// all fail the single rule, since a phase id reaches the filesystem (finding
/// 4). `NN` is kept verbatim; only the `PHASE-` prefix is lowercased.
pub(crate) fn phase_stem(phase_id: &str) -> anyhow::Result<String> {
    let digits = phase_id
        .strip_prefix("PHASE-")
        .filter(|d| !d.is_empty() && d.bytes().all(|b| b.is_ascii_digit()))
        .with_context(|| format!("Phase id {phase_id:?} must match PHASE-<digits>"))?;
    Ok(format!("phase-{digits}"))
}

/// Reverse of `phase_stem`: recover the canonical `PHASE-NN` id from an on-disk
/// stem so the drift report speaks one dialect — `orphan`/`pruned` match
/// `created`'s canonical ids, never the derived filename form. Stems reach this
/// only from `existing_phase_stems`, which guarantees the `phase-` prefix.
fn phase_id_from_stem(stem: &str) -> String {
    format!("PHASE-{}", stem.strip_prefix("phase-").unwrap_or(stem))
}

/// Materialise, per declared phase, a `phase-NN.toml` (tracking) + `phase-NN.md`
/// (disposable sheet) under the state tree. Ensures the (gitignored,
/// possibly-absent) parent, then writes any **missing file of each pair** —
/// per-file skip, so a phase left half-written by a crash completes on re-run.
/// Diffs on-disk tracking against the plan: orphans (plan phase gone) are
/// reported, removed only under `prune`. Refreshes the verified convenience
/// symlink. Idempotent on the no-drift path. All phase ids are validated up
/// front (before any write); uniqueness is guaranteed by `Plan::parse`.
pub(crate) fn init_phases(
    project_root: &Path,
    slice_id: u32,
    plan: &Plan,
    prune: bool,
) -> anyhow::Result<InitReport> {
    // Validate + derive every phase stem before touching the filesystem, so one
    // malformed id fails the whole init clean rather than after the earlier phases
    // are already written (a non-atomic init rejecting input knowable up front).
    // `phase_stem` is the single `PHASE-<digits>` validator.
    let stems = plan
        .phases
        .iter()
        .map(|phase| Ok((phase, phase_stem(&phase.id)?)))
        .collect::<anyhow::Result<Vec<_>>>()?;

    let dir = phases_dir(project_root, slice_id);
    fs::create_dir_all(&dir).with_context(|| format!("Failed to create {}", dir.display()))?;

    let mut report = InitReport::default();
    let mut plan_stems = BTreeSet::new();

    for (phase, stem) in &stems {
        plan_stems.insert(stem.clone());
        let wrote_toml = write_if_absent(
            &dir.join(format!("{stem}.toml")),
            &render_tracking(&phase.id),
        )?;
        let wrote_md =
            write_if_absent(&dir.join(format!("{stem}.md")), &render_phase_sheet(phase)?)?;
        if wrote_toml || wrote_md {
            report.created.push(phase.id.clone());
        }
    }

    for stem in existing_phase_stems(&dir)? {
        if plan_stems.contains(&stem) {
            continue;
        }
        if prune {
            drop(fs::remove_file(dir.join(format!("{stem}.toml"))));
            drop(fs::remove_file(dir.join(format!("{stem}.md"))));
            report.pruned.push(phase_id_from_stem(&stem));
        } else {
            report.orphan.push(phase_id_from_stem(&stem));
        }
    }

    refresh_symlink(project_root, slice_id)?;
    Ok(report)
}

/// Write `body` to `path` only if absent. `create_new` makes the skip atomic;
/// the partial-init recovery (finding round-2) rides on this per-file skip.
fn write_if_absent(path: &Path, body: &str) -> anyhow::Result<bool> {
    match fsutil::create_new_file(path) {
        Ok(mut f) => {
            f.write_all(body.as_bytes())
                .with_context(|| format!("Failed to write {}", path.display()))?;
            Ok(true)
        }
        Err(e) if e.kind() == ErrorKind::AlreadyExists => Ok(false),
        Err(e) => Err(e).with_context(|| format!("Failed to create {}", path.display())),
    }
}

/// Distinct `phase-*` stems already present on disk (from either file of a
/// pair). A missing dir yields an empty set.
pub(crate) fn existing_phase_stems(dir: &Path) -> anyhow::Result<BTreeSet<String>> {
    let mut stems = BTreeSet::new();
    let entries = match fs::read_dir(dir) {
        Ok(entries) => entries,
        Err(e) if e.kind() == ErrorKind::NotFound => return Ok(stems),
        Err(e) => return Err(e).with_context(|| format!("Failed to read {}", dir.display())),
    };
    for entry in entries {
        let entry = entry?;
        let name = entry.file_name();
        let Some(name) = name.to_str() else { continue };
        if let Some(stem) = name
            .strip_suffix(".toml")
            .or_else(|| name.strip_suffix(".md"))
            && stem.starts_with("phase-")
        {
            stems.insert(stem.to_string());
        }
    }
    Ok(stems)
}

/// The one field the rollup reads from a `phase-NN.toml`. Optional + tolerant:
/// unknown keys are ignored, and a malformed file parses to `status = None`
/// (treated as `missing_toml`, never an error — design § 5.5).
#[derive(Deserialize)]
struct TrackingStatus {
    status: Option<String>,
}

/// Read one phase stem's status string. `None` when the `.toml` is absent (a
/// `.md`-only crash-partial), unparseable, or carries no `status` — all of which
/// the fold counts as `missing_toml` rather than dropping the phase (R-F4). A
/// genuine IO error (not "not found") propagates.
pub(crate) fn read_phase_status(dir: &Path, stem: &str) -> anyhow::Result<Option<String>> {
    let path = dir.join(format!("{stem}.toml"));
    let text = match fs::read_to_string(&path) {
        Ok(t) => t,
        Err(e) if e.kind() == ErrorKind::NotFound => return Ok(None),
        Err(e) => return Err(e).with_context(|| format!("Failed to read {}", path.display())),
    };
    Ok(toml::from_str::<TrackingStatus>(&text)
        .ok()
        .and_then(|t| t.status))
}

/// Derive the phase-completion rollup for a slice from its runtime tracking tree.
/// The phase set comes from `existing_phase_stems` — the same notion `init_phases`
/// uses (either half of the pair) — so `.md`-only crash-partials count as
/// `missing_toml` and the total never silently shrinks (D8). `None` only when no
/// phase exists at all (dir absent or empty): the *untracked* signal. The path is
/// id-derived; the convenience `phases` symlink is never followed.
pub(crate) fn phase_rollup(
    project_root: &Path,
    slice_id: u32,
) -> anyhow::Result<Option<PhaseRollup>> {
    let dir = phases_dir(project_root, slice_id);
    let stems = existing_phase_stems(&dir)?;
    if stems.is_empty() {
        return Ok(None);
    }
    let statuses: Vec<Option<String>> = stems
        .iter()
        .map(|stem| read_phase_status(&dir, stem))
        .collect::<anyhow::Result<_>>()?;
    let stem_statuses: Vec<StemStatus<'_>> = statuses
        .iter()
        .map(|s| match s {
            Some(status) => StemStatus::Toml(status),
            None => StemStatus::MissingToml,
        })
        .collect();
    Ok(Some(fold_rollup(&stem_statuses)))
}

/// The minimal v1 phase-tracking skeleton (slice-004 §5.2): a phase-level
/// status plus an (initially empty) append-only progress log. Richer
/// per-criterion/task rows graduate to TOML when a consumer lands (D5/Q2).
/// Mutated later by
/// `set_phase_status` via `toml_edit` (comment/unknown-key preserving), so it
/// is rendered, never reserialised.
fn render_tracking(phase_id: &str) -> String {
    format!(
        "schema  = \"doctrine.phase.tracking\"\n\
         version = 1\n\
         phase   = \"{phase_id}\"\n\
         status  = \"planned\"   # planned | in_progress | completed | blocked\n\
         started      = \"\"\n\
         completed    = \"\"\n\
         last_updated = \"\"\n\
         \n\
         # Append-only runtime progress log, written by `doctrine slice phase`.\n"
    )
}

/// Render the disposable phase sheet from the embedded template.
fn render_phase_sheet(phase: &PlanPhase) -> anyhow::Result<String> {
    Ok(crate::install::asset_text("templates/phase.md")?
        .replace("{{phase_id}}", &phase.id)
        .replace("{{name}}", &phase.name)
        .replace("{{objective}}", &phase.objective))
}

/// Refresh the gitignored convenience symlink
/// `.doctrine/slice/<id>/phases → ../../state/slice/<id>/phases`. Verified
/// (a wrong link is replaced, a real file/dir errors); never authority.
fn refresh_symlink(project_root: &Path, slice_id: u32) -> anyhow::Result<()> {
    let name = format!("{slice_id:03}");
    let link = project_root.join(SLICE_DIR).join(&name).join("phases");
    let target = PathBuf::from(format!("../../state/slice/{name}/phases"));
    fsutil::set_symlink(&link, &target)
}

/// Shared edit-preserving skeleton for the two phase-sheet writers
/// ([`set_phase_status`] and [`reconcile_phase_status`]): read the id-derived
/// sheet (`phase_stem` validates the id; the convenience `phases` symlink is
/// never followed), parse it with `toml_edit` so hand-added comments and unknown
/// keys survive (entity-model § Rust model — the file is mutated, never
/// reserialised), hand the mutable root table to `mutate`, then write it back.
/// The lone `fs::write` lives HERE, so both writers share one skeleton and one
/// disallowed-methods waiver rather than duplicating the `toml_edit` boilerplate
/// (SL-190 EX-1, DRY). `now`/status decisions stay with the caller's closure.
// fn-level expect: the lone fs::write cannot carry a stmt-level attribute on
// stable Rust (stmt_expr_attributes).
#[expect(
    clippy::disallowed_methods,
    reason = "runtime phase sheet — disposable, atomicity not required"
)]
fn edit_phase_sheet<F>(
    project_root: &Path,
    slice_id: u32,
    phase_id: &str,
    mutate: F,
) -> anyhow::Result<()>
where
    F: FnOnce(&mut toml_edit::Table) -> anyhow::Result<()>,
{
    let stem = phase_stem(phase_id)?;
    let path = phases_dir(project_root, slice_id).join(format!("{stem}.toml"));
    let text = fs::read_to_string(&path).with_context(|| {
        format!(
            "Phase tracking not found at {} — run `doctrine slice phases` first",
            path.display()
        )
    })?;
    let mut doc = text
        .parse::<toml_edit::DocumentMut>()
        .with_context(|| format!("Failed to parse {}", path.display()))?;
    mutate(doc.as_table_mut())?;
    fs::write(&path, doc.to_string()).with_context(|| format!("Failed to write {}", path.display()))
}

/// Edit-preserving status transition on one phase: set `status`, stamp
/// `last_updated` (and `started`/`completed` on first entry), and append a
/// `[[progress]]` row — then (DEGRADING, AFTER the sheet write) capture/evict the
/// phase's source-delta boundary. Shares the read-parse-write skeleton with
/// [`edit_phase_sheet`]; the registry side-effects that mutate the recorded
/// boundaries are deliberately kept OUT of that shared core (they are what makes
/// this writer unsuitable for reconcile, SL-190). `now` is supplied by the shell
/// (the clock stays out of this layer).
pub(crate) fn set_phase_status(
    project_root: &Path,
    slice_id: u32,
    phase_id: &str,
    status: PhaseStatus,
    note: Option<&str>,
    now: &str,
) -> anyhow::Result<()> {
    // Captured inside the sheet mutation but consumed by the DEGRADING registry
    // side-effects AFTER the write — those never leak into the shared skeleton.
    let mut was_completed = false;
    let mut capture_end = None;

    edit_phase_sheet(project_root, slice_id, phase_id, |table| {
        // Capture the prior status BEFORE the insert overwrites it: a reopen
        // (Completed→non-Completed) must retire the now-defunct boundary (D8/P2-1).
        was_completed =
            table.get("status").and_then(Item::as_str) == Some(PhaseStatus::Completed.as_str());
        table.insert("status", toml_edit::value(status.as_str()));
        table.insert("last_updated", toml_edit::value(now));
        if status == PhaseStatus::InProgress
            && table.get("started").and_then(Item::as_str) == Some("")
        {
            table.insert("started", toml_edit::value(now));
        }
        // `completed` holds a stamp iff the phase is completed: stamp once on first
        // completion (a re-complete keeps the original time), and clear it on any
        // non-completed status so a reopen leaves no stale completion time on an
        // in-progress/blocked phase (an otherwise internally-contradictory record).
        if status == PhaseStatus::Completed {
            if table.get("completed").and_then(Item::as_str) == Some("") {
                table.insert("completed", toml_edit::value(now));
            }
        } else {
            table.insert("completed", toml_edit::value(""));
            // Reopen (Completed→non-Completed): clear the start-stamp so the binding
            // re-captures a FRESH range on the next in_progress flip (capture_phase_boundary
            // below re-stamps it), never reusing the stale start (P2-1). The registry row is
            // evicted just after the sheet write (D8).
            if was_completed {
                table.insert("code_start_oid", toml_edit::value(""));
            }
        }

        // Solo phase-binding capture (SL-147 PHASE-04, design D5): a SEPARATE,
        // ADDITIVE, DEGRADING step that records the per-phase code boundary into the
        // arm-neutral registry. It NEVER alters the status-flip behaviour above — on
        // any git/bare-repo failure (or in a dispatch coordination context) it
        // degrades to a no-op with a NAMED warning and the transition still
        // completes. On InProgress it stamps `code_start_oid` (HEAD) into the sheet
        // once; on Completed it reads that back and records `(start, HEAD)` via the
        // F-6 guard + upsert. The stamp must ride THIS doc write, so it mutates the
        // table before the write; the registry record happens AFTER the write.
        capture_end = capture_phase_boundary(project_root, slice_id, phase_id, status, table);

        let mut row = toml_edit::Table::new();
        row.insert("timestamp", toml_edit::value(now));
        row.insert("status", toml_edit::value(status.as_str()));
        if let Some(note) = note {
            row.insert("note", toml_edit::value(note));
        }
        table
            .entry("progress")
            .or_insert_with(|| Item::ArrayOfTables(toml_edit::ArrayOfTables::new()))
            .as_array_of_tables_mut()
            .context("`progress` exists but is not an array of tables")?
            .push(row);
        Ok(())
    })?;

    // Reopen eviction (design D8): a Completed→non-Completed transition retires the
    // recorded boundary — drop its registry row so a re-completion records a fresh one
    // rather than the conformance gate blessing a stale row. DEGRADING like the record
    // tail below (named warning, never returned): the binding must NEVER block a status
    // transition (D5), and a non-repo/bare cwd makes `boundaries_path` itself error. A
    // lingering row is self-healing — the re-completion's upsert overwrites it — and a
    // never-recompleted reopen surfaces it loudly via the completeness gate (Extra).
    // Primary-tree-resolved like the writer; an absent row is a no-op (`Ok(false)`).
    if was_completed
        && status != PhaseStatus::Completed
        && let Err(e) = forget_source_delta(project_root, slice_id, phase_id)
    {
        warn_capture(phase_id, &format!("reopen eviction failed: {e:#}"));
    }

    // The registry write is the tail of the DEGRADING capture: it runs only on a
    // completion that resolved a `(start, end)` pair, and its failure is reported
    // (named warning) but never returned — the status transition above already
    // succeeded and must stand.
    if let Some(CaptureCompletion { start, end }) = capture_end
        && let Err(e) = record_source_delta(
            project_root,
            slice_id,
            BoundaryRow {
                phase: phase_id.to_string(),
                code_start_oid: start,
                code_end_oid: end,
                // Solo binding capture is the solo landing writer (design §5.3).
                provenance: Provenance::Solo,
            },
        )
    {
        warn_capture(phase_id, &format!("recording source delta failed: {e:#}"));
    }

    Ok(())
}

/// The resolved completion boundary handed back by [`capture_phase_boundary`]
/// when a `Completed` transition has both a stamped start and a readable HEAD —
/// the input to the registry record that runs AFTER the sheet write.
struct CaptureCompletion {
    start: String,
    end: String,
}

/// Solo phase-binding capture step (SL-147 PHASE-04). Mutates `table` (the phase
/// sheet) to stamp `code_start_oid` on entry to `InProgress`, and returns the
/// `(start, end)` pair to record on `Completed`. Returns `None` (no registry
/// write) for every other status, when the arm guard fires (a *live* coordination
/// worktree exists for `dispatch/<slice_id>` — D3/D9), or when any git read
/// degrades — emitting a NAMED warning so the operator sees why no row landed,
/// WITHOUT blocking the transition. `project_root` doubles as the git cwd (the
/// repo it lives in).
fn capture_phase_boundary(
    project_root: &Path,
    slice_id: u32,
    phase_id: &str,
    status: PhaseStatus,
    table: &mut toml_edit::Table,
) -> Option<CaptureCompletion> {
    if status != PhaseStatus::InProgress && status != PhaseStatus::Completed {
        return None;
    }

    // Arm guard: a dispatch coordination context records via the funnel recorder,
    // never the solo binding — they must NEVER both record a phase. Key on a *live*
    // coordination worktree for `dispatch/<slice_id>` (D3 + D9), not the current
    // branch: the branch-proxy was unsound when the flip ran from the session root
    // (the primary tree on `main` while the coord worktree owns `dispatch/NNN`), and
    // a solo `/worktree` fork on its own feature branch must still capture. Liveness
    // (`!prunable && path.exists()`) means a stale/pruned coord entry reads as absent,
    // so capture is never suppressed forever. A probe error warns + stands down.
    match crate::git::live_worktree_for_ref(
        project_root,
        &format!("{DISPATCH_REF_PREFIX}{slice_id:03}"),
    ) {
        Ok(Some(_)) => return None,
        Ok(None) => {}
        Err(e) => {
            warn_capture(phase_id, &format!("coord worktree probe failed: {e}"));
            return None;
        }
    }

    let head = match crate::git::resolve_ref(project_root, "HEAD") {
        Ok(Some(oid)) => oid,
        Ok(None) => {
            warn_capture(phase_id, "HEAD does not resolve (unborn/detached)");
            return None;
        }
        Err(e) => {
            warn_capture(phase_id, &format!("HEAD probe failed: {e}"));
            return None;
        }
    };

    if status == PhaseStatus::InProgress {
        // Stamp the start once: an in-progress re-entry (or a reopen → re-start)
        // keeps the original start so the boundary spans the whole phase.
        if table
            .get("code_start_oid")
            .and_then(Item::as_str)
            .is_none_or(str::is_empty)
        {
            table.insert("code_start_oid", toml_edit::value(&head));
        }
        return None;
    }

    // status == Completed: read the stamped start back. An absent start (the
    // phase was never flipped in_progress under the binding) degrades — without a
    // start there is no boundary to record.
    let Some(start) = table
        .get("code_start_oid")
        .and_then(Item::as_str)
        .filter(|s| !s.is_empty())
        .map(str::to_owned)
    else {
        warn_capture(
            phase_id,
            "no code_start_oid stamped (phase never entered in_progress under the binding) — no boundary recorded",
        );
        return None;
    };

    Some(CaptureCompletion { start, end: head })
}

/// Emit a single NAMED capture-degradation warning to stderr (the binding never
/// blocks a status transition — design D5). Routed through one helper so the
/// message shape is uniform and greppable.
fn warn_capture(phase_id: &str, detail: &str) {
    let _ignored = writeln!(
        std::io::stderr(),
        "warning: phase-binding capture skipped for {phase_id}: {detail}"
    );
}

// ---------------------------------------------------------------------------
// Recorded source-delta registry (SL-147 PHASE-02)
// ---------------------------------------------------------------------------
//
// The arm-neutral record of each phase's committed code boundary — the same
// per-phase `(code_start, code_end)` pair the claude arm writes into its
// committed dispatch ledger, but for ANY arm and persisted as gitignored
// runtime state. ONE file per slice, shared across every worktree of the repo:
// it resolves against the PRIMARY working tree (`crate::git::primary_worktree`),
// NOT `root::find(cwd)`, so a worker recording from a linked worktree writes the
// row a later integrator reads from the main tree.
//
// Tier: `.doctrine/state/slice/<NNN>/boundaries.toml` — disposable, never
// authored (mirrors `phases_dir`'s path idiom one level up). No funnel consumer
// is wired yet; PHASE-03 reads it (slice conformance) and PHASE-04 writes
// through it (record-delta / slice phase binding), so the symbols are
// dead-code-phased per-symbol until then.

/// The slice's recorded source-delta registry: a thin container over the
/// arm-neutral [`BoundaryRow`] (the row type is owned by the `boundary` leaf,
/// not re-declared here — this is a container, not a parallel row). Round-trips
/// through `boundaries.toml` with `[[boundary]]` table headers.
#[derive(Debug, Clone, PartialEq, Eq, Default, serde::Serialize, serde::Deserialize)]
pub(crate) struct SourceDeltas {
    #[serde(default, rename = "boundary")]
    pub rows: Vec<BoundaryRow>,
}

/// Canonical registry path for a slice, resolved against the PRIMARY working
/// tree so every worktree shares one file:
/// `<primary>/.doctrine/state/slice/<NNN>/boundaries.toml`. `cwd` may be any
/// path in the repo (a linked worker worktree is the typical caller). A
/// bare/not-a-repo `cwd` yields a clean named error via `primary_worktree`.
pub(crate) fn boundaries_path(cwd: &Path, slice_id: u32) -> anyhow::Result<PathBuf> {
    let primary = crate::git::primary_worktree(cwd)?;
    Ok(primary
        .join(STATE_SLICE_DIR)
        .join(format!("{slice_id:03}"))
        .join("boundaries.toml"))
}

/// Load a slice's registry from `path` (an absent file is an empty registry,
/// never an error; a present-but-malformed file is a hard error). The shared
/// read half of the registry's read-modify-write surface — mirrors the
/// `ledger::load` idiom.
fn read_registry(path: &Path) -> anyhow::Result<SourceDeltas> {
    match fs::read_to_string(path) {
        Ok(text) => {
            toml::from_str(&text).with_context(|| format!("Failed to parse {}", path.display()))
        }
        Err(e) if e.kind() == ErrorKind::NotFound => Ok(SourceDeltas::default()),
        Err(e) => Err(e).with_context(|| format!("Failed to read {}", path.display())),
    }
}

/// Persist a slice's registry to `path`, creating the slice runtime dir on first
/// write. The shared write half (mirrors `ledger::store`); the single
/// `fs::write`/`create_dir_all` site, so the disposable-state lint expectation
/// lives here, not on every caller.
#[expect(
    clippy::disallowed_methods,
    reason = "runtime registry — disposable gitignored state, atomicity not required"
)]
fn write_registry(path: &Path, registry: &SourceDeltas) -> anyhow::Result<()> {
    if let Some(parent) = path.parent() {
        fs::create_dir_all(parent)
            .with_context(|| format!("Failed to create {}", parent.display()))?;
    }
    let body = toml::to_string(registry).context("serialize source-delta registry")?;
    fs::write(path, body).with_context(|| format!("Failed to write {}", path.display()))
}

/// Read the recorded source deltas for `slice_id` (empty Vec when the file is
/// absent or empty — never an error). Mirrors the `read_phase_status`
/// not-found-is-empty idiom; a present-but-malformed file is a hard error.
pub(crate) fn read_source_deltas(cwd: &Path, slice_id: u32) -> anyhow::Result<Vec<BoundaryRow>> {
    Ok(read_registry(&boundaries_path(cwd, slice_id)?)?.rows)
}

/// Record (UPSERT by phase) one phase's committed source delta into the slice's
/// registry. The guard runs BEFORE the write: `code_start` must be an ancestor
/// of `code_end` (a real forward delta, possibly empty when equal) AND
/// `code_end` must be a non-merge commit (`parents().len() <= 1`) — the boundary
/// is a single linear code tip, never a merge. A bare/not-a-repo `cwd`, or a
/// `code_*` oid git cannot resolve, surfaces as a clean named error (the git
/// leaf's `CaptureError`), never a panic. Read-modify-write; the dir/file are
/// created on first write. `row.phase` keys the upsert so a re-record of the
/// same phase replaces (never duplicates) its row.
pub(crate) fn record_source_delta(
    cwd: &Path,
    slice_id: u32,
    row: BoundaryRow,
) -> anyhow::Result<()> {
    if !crate::git::is_ancestor(cwd, &row.code_start_oid, &row.code_end_oid)? {
        anyhow::bail!(
            "record_source_delta: code_start {} is not an ancestor of code_end {} (not a forward delta)",
            row.code_start_oid,
            row.code_end_oid
        );
    }
    if crate::git::parents(cwd, &row.code_end_oid)?.len() > 1 {
        anyhow::bail!(
            "record_source_delta: code_end {} is a merge commit (boundary must be a non-merge code tip)",
            row.code_end_oid
        );
    }

    let path = boundaries_path(cwd, slice_id)?;
    let mut registry = read_registry(&path)?;

    // Sticky provenance merge (design §5.2/§5.3, D12), keyed on the INCOMING row
    // and resolved here inside the RMW so it is atomic — never a caller pre-read.
    // The range/oids always take the incoming value (a re-record corrects the
    // boundary); only the landing-path stamp is sticky.
    match registry.rows.iter_mut().find(|r| r.phase == row.phase) {
        Some(existing) => {
            let keep = match row.provenance {
                // Landing writers are authoritative — they overwrite.
                Provenance::Solo | Provenance::Funnel => row.provenance,
                // A correction (Manual) or a legacy read (Unknown) never
                // reclassifies an already-recorded landing path.
                Provenance::Manual | Provenance::Unknown => existing.provenance,
            };
            *existing = row;
            existing.provenance = keep;
        }
        // A fresh phase stores the incoming value as-is.
        None => registry.rows.push(row),
    }

    write_registry(&path, &registry)
}

/// Derive a single-commit boundary row for `commit` — exactly its own patch
/// `[S^, S]` (design SL-189 §5.2). Resolve `commit` to a full oid (a ref that
/// does not resolve is a clean named error), then require EXACTLY one parent:
/// this rejects BOTH merge commits (>1 parent) AND root commits (0 parents) —
/// neither has a single "own patch". `git diff S^..S` is then precisely `S`'s
/// delta, so trailed knowledge, refresh-base merges, and foreign source drop out
/// by construction. The tight, safe-by-construction counterpart to a hand-passed
/// `start..end` range; the caller pairs it with [`record_source_delta`], which
/// re-applies the ancestor/non-merge guard on the built row.
pub(crate) fn single_commit_boundary(
    root: &Path,
    commit: &str,
    provenance: crate::boundary::Provenance,
    phase: &str,
) -> anyhow::Result<crate::boundary::BoundaryRow> {
    let end = crate::git::resolve_ref(root, commit)?.with_context(|| {
        format!("single_commit_boundary: {commit} does not resolve to a commit")
    })?;
    let parents = crate::git::parents(root, &end)?;
    let [start] = parents.as_slice() else {
        anyhow::bail!(
            "single_commit_boundary: {commit} must have exactly one parent (a non-merge, \
             non-root commit with a single own patch), found {}",
            parents.len()
        );
    };
    Ok(crate::boundary::BoundaryRow {
        phase: phase.into(),
        code_start_oid: start.clone(),
        code_end_oid: end,
        provenance,
    })
}

/// Evict one phase's row from the slice's registry — the inverse of
/// [`record_source_delta`] and its reopen-eviction sibling (design D8; the sole
/// caller is the PHASE-03 completed→non-completed reopen, which must not leave a
/// stale row behind a cleared start-stamp). Primary-tree-resolved like the
/// writer. Returns whether a row was removed: an absent registry file or an
/// absent phase is a no-op `Ok(false)`, never an error. No git guard — a removal
/// records no range.
pub(crate) fn forget_source_delta(cwd: &Path, slice_id: u32, phase: &str) -> anyhow::Result<bool> {
    let path = boundaries_path(cwd, slice_id)?;
    let mut registry = read_registry(&path)?;

    let before = registry.rows.len();
    registry.rows.retain(|r| r.phase != phase);
    if registry.rows.len() == before {
        return Ok(false);
    }
    write_registry(&path, &registry)?;
    Ok(true)
}

/// The completeness verdict of the recorded registry against a slice's completed
/// phases (design F-2): either every completed phase has exactly one row (and no
/// row belongs to a non-completed phase), or the registry is incomplete with a
/// named gap. `slice conformance` refuses to emit a clean diff when this returns
/// `Incomplete` — partial coverage must never read as conformance.
#[derive(Debug, Clone, PartialEq, Eq)]
pub(crate) enum Completeness {
    /// One row per completed phase, no extras — the registry covers the work.
    Complete,
    /// A coverage gap, naming the offending phase(s) so the operator can act.
    Incomplete { gaps: Vec<CompletenessGap> },
}

/// A single named coverage gap between recorded rows and completed phases.
#[derive(Debug, Clone, PartialEq, Eq)]
pub(crate) enum CompletenessGap {
    /// A completed phase with no recorded boundary row.
    Missing { phase: String },
    /// A recorded row whose phase is not completed (or does not exist).
    Extra { phase: String },
    /// More than one recorded row for the same phase.
    Duplicate { phase: String },
}

impl CompletenessGap {
    /// One-line, phase-naming description for the `incomplete` render.
    pub(crate) fn describe(&self) -> String {
        match self {
            CompletenessGap::Missing { phase } => {
                format!("completed phase {phase} has no recorded source-delta row")
            }
            CompletenessGap::Extra { phase } => {
                format!("recorded row for {phase}, which is not a completed phase")
            }
            CompletenessGap::Duplicate { phase } => {
                format!("recorded more than one row for phase {phase}")
            }
        }
    }
}

/// Pure cross-check (design F-2): every completed phase id MUST have exactly one
/// recorded row, and every recorded row's phase MUST be completed. `completed`
/// is the set of completed `PHASE-NN` ids; `recorded` is the ordered list of
/// `row.phase` strings (duplicates surfaced). Zero-delta rows (start==end) are
/// not special-cased here — a recorded row is a recorded row; the writer's guard
/// owns range validity. Gaps are reported in a stable order (missing, extra,
/// duplicate) so the message is deterministic. No IO — the reads are the caller's.
pub(crate) fn check_completeness(
    completed: &BTreeSet<String>,
    recorded: &[String],
) -> Completeness {
    let mut counts: std::collections::BTreeMap<&str, u32> = std::collections::BTreeMap::new();
    for phase in recorded {
        *counts.entry(phase.as_str()).or_insert(0) += 1;
    }

    let mut gaps = Vec::new();
    for phase in completed {
        if !counts.contains_key(phase.as_str()) {
            gaps.push(CompletenessGap::Missing {
                phase: phase.clone(),
            });
        }
    }
    for (phase, count) in &counts {
        if !completed.contains(*phase) {
            gaps.push(CompletenessGap::Extra {
                phase: (*phase).to_string(),
            });
        } else if *count > 1 {
            gaps.push(CompletenessGap::Duplicate {
                phase: (*phase).to_string(),
            });
        }
    }

    if gaps.is_empty() {
        Completeness::Complete
    } else {
        Completeness::Incomplete { gaps }
    }
}

/// The set of completed `PHASE-NN` ids for a slice, read from its runtime phase
/// sheets (the same id-derived tree `phase_rollup` reads — the `phases` symlink
/// is never followed). A `.md`-only crash-partial or unreadable `.toml` is not
/// "completed", so it is excluded (and will surface as a `MissingRow` gap if a
/// row was nonetheless recorded — fail-closed). Empty when no phase exists.
pub(crate) fn completed_phase_ids(
    project_root: &Path,
    slice_id: u32,
) -> anyhow::Result<BTreeSet<String>> {
    let dir = phases_dir(project_root, slice_id);
    let mut completed = BTreeSet::new();
    for stem in existing_phase_stems(&dir)? {
        if let Some(status) = read_phase_status(&dir, &stem)?
            && PhaseStatus::from_str(&status, false) == Ok(PhaseStatus::Completed)
        {
            completed.insert(phase_id_from_stem(&stem));
        }
    }
    Ok(completed)
}

/// IO wrapper over [`check_completeness`] (design F-2): reads the recorded rows
/// (from the primary-tree registry, via `cwd`) and the completed phase ids (from
/// the `project_root` state tree), then cross-checks them. The conformance shell
/// invokes ONLY this — no phase-sheet reading leaks into the command/algebra
/// layers. `cwd` resolves the shared registry; `project_root` is the local state
/// tree (they coincide in the primary worktree).
pub(crate) fn registry_completeness(
    cwd: &Path,
    project_root: &Path,
    slice_id: u32,
) -> anyhow::Result<Completeness> {
    let recorded: Vec<String> = read_source_deltas(cwd, slice_id)?
        .into_iter()
        .map(|row| row.phase)
        .collect();
    let completed = completed_phase_ids(project_root, slice_id)?;
    Ok(check_completeness(&completed, &recorded))
}

// ---------------------------------------------------------------------------
// Composite phase-truth resolver (SL-190 PHASE-01) — pure core
// ---------------------------------------------------------------------------

/// Per-phase "landed" signal: does a durable/derived artifact say this phase's
/// source delta is already in? `RefPresent` is the committed `phase/<slice>-NN`
/// git ref (durable, cross-machine); `CachePresent` is the primary-local
/// registry cache row (covers the mid-drive window before the refs are cut at
/// prepare-review); `Absent` is neither. Only presence matters to the resolver —
/// both present variants read as landed (`is_landed`). See design § "Canonical
/// source of truth".
#[derive(Debug, Clone, Copy, PartialEq, Eq)]
pub(crate) enum LandedSignal {
    RefPresent,
    CachePresent,
    Absent,
}

impl LandedSignal {
    /// Whether either landed source (durable ref or derived cache) is present.
    pub(crate) fn is_landed(self) -> bool {
        matches!(self, Self::RefPresent | Self::CachePresent)
    }
}

/// Which shape a CONFLICT takes (design total table): a phase reads LANDED yet a
/// live coord sheet disagrees. `Rework` = the sheet is back to
/// `in_progress`/`blocked` (active re-dispatch); `ReworkReset` = the sheet is
/// `planned` again (reset to the start). Surfaced, never silently resolved.
#[derive(Debug, Clone, Copy, PartialEq, Eq)]
pub(crate) enum ConflictKind {
    Rework,
    ReworkReset,
}

/// The composite per-phase truth — exactly the design total table's outcomes.
/// `InFlight`/`Local` carry the deciding sheet's status string. `Unknown` is the
/// total function's catch-all (no source has a usable opinion, incl. phase-set
/// drift). `Anomaly` mirrors `PhaseRollup::anomalies` (malformed tracking).
#[derive(Debug, Clone, PartialEq, Eq)]
pub(crate) enum PhaseTruth {
    Landed,
    Conflict(ConflictKind),
    InFlight(String),
    Planned,
    Local(String),
    Anomaly,
    Unknown,
}

/// Cross-source disagreement summary for a slice's phases. `assert_worthy` is
/// the `--assert` gate: true ONLY on a CONFLICT or an opinionated disagreement
/// (two sources holding differing non-anomaly, non-unknown statuses). Anomaly,
/// Unknown, and phase-set mismatch are surfaced (for the human table) but do NOT
/// arm `--assert` (design "--assert scope") — otherwise a fresh handoff machine
/// is permanently red.
#[derive(Debug, Default, Clone, PartialEq, Eq)]
pub(crate) struct Divergence {
    pub(crate) conflicts: Vec<String>,
    pub(crate) disagreements: Vec<String>,
    pub(crate) anomalies: Vec<String>,
    pub(crate) unknown: Vec<String>,
    pub(crate) phase_set_mismatch: Vec<String>,
}

impl Divergence {
    /// The `--assert` predicate: conflicts and opinionated disagreements only.
    pub(crate) fn assert_worthy(&self) -> bool {
        !self.conflicts.is_empty() || !self.disagreements.is_empty()
    }
}

/// One sheet's concrete opinion: a parseable `PhaseStatus`, or `Anomaly` for an
/// unrecognised status string / `.md`-only crash-partial (mirrors how
/// `fold_rollup` buckets `unknown`/`missing_toml`).
enum Opinion {
    Status(PhaseStatus),
    Anomaly,
}

/// Interpret a per-phase `StemStatus` as a sheet opinion. Reuses
/// `PhaseStatus::from_str` — the single status vocabulary (no parallel list).
fn opinion(stem: &StemStatus<'_>) -> Opinion {
    match stem {
        StemStatus::MissingToml => Opinion::Anomaly,
        StemStatus::Toml(s) => match PhaseStatus::from_str(s, false) {
            Ok(ps) => Opinion::Status(ps),
            Err(_) => Opinion::Anomaly,
        },
    }
}

/// The landed signal for `id`, defaulting to `Absent` when the phase is absent
/// from the landed map.
fn landed_at(landed: &[(String, LandedSignal)], id: &str) -> LandedSignal {
    landed
        .iter()
        .find(|(k, _)| k.as_str() == id)
        .map_or(LandedSignal::Absent, |(_, v)| *v)
}

/// The sheet opinion for `id` in a per-phase status map, or `None` when the
/// phase is absent from that map (phase-set drift).
fn opinion_at(map: &[(String, StemStatus<'_>)], id: &str) -> Option<Opinion> {
    map.iter()
        .find(|(k, _)| k.as_str() == id)
        .map(|(_, v)| opinion(v))
}

/// Resolve composite per-phase truth from the three source maps — **pure and
/// total** (no git/disk/clock/rng; the shell gathers the inputs). Iterates the
/// deterministic union of phase ids across all maps, so no phase is ever
/// dropped; a phase with no usable opinion falls through to `Unknown`.
///
/// `coord` is `Option`: `None` means **no coord tree at all** (→ the LOCAL
/// branch, design table's "(no coord tree)" row); `Some(map)` with the phase
/// absent means **coord tree present but this phase unknown to it** (→ `Unknown`
/// with a phase-set-mismatch, the plan-drift row). That distinction is
/// load-bearing. Anomaly rows suppress divergence (mirroring
/// `PhaseRollup::anomalies`).
pub(crate) fn resolve_phase_truth(
    landed: &[(String, LandedSignal)],
    coord: Option<&[(String, StemStatus<'_>)]>,
    local: &[(String, StemStatus<'_>)],
) -> (Vec<(String, PhaseTruth)>, Divergence) {
    // Deterministic union of phase ids across every supplied map (BTreeSet).
    let mut ids: BTreeSet<String> = BTreeSet::new();
    ids.extend(landed.iter().map(|(k, _)| k.clone()));
    if let Some(coord) = coord {
        ids.extend(coord.iter().map(|(k, _)| k.clone()));
    }
    ids.extend(local.iter().map(|(k, _)| k.clone()));

    let mut out = Vec::with_capacity(ids.len());
    let mut div = Divergence::default();

    for id in ids {
        let landed_here = landed_at(landed, &id);
        let truth = match coord {
            // No coord tree at all → LANDED if landed, else the LOCAL sheet.
            None => {
                if landed_here.is_landed() {
                    PhaseTruth::Landed
                } else {
                    match opinion_at(local, &id) {
                        Some(Opinion::Status(s)) => PhaseTruth::Local(s.as_str().to_string()),
                        Some(Opinion::Anomaly) => {
                            div.anomalies.push(id.clone());
                            PhaseTruth::Anomaly
                        }
                        // Known only to the landed map (which says absent) — an
                        // orphan with no sheet. Total catch-all → Unknown.
                        None => {
                            div.phase_set_mismatch.push(id.clone());
                            div.unknown.push(id.clone());
                            PhaseTruth::Unknown
                        }
                    }
                }
            }
            // Coord tree present.
            Some(coord_map) => match opinion_at(coord_map, &id) {
                // Phase absent from the coord tree → plan drift → Unknown.
                None => {
                    div.phase_set_mismatch.push(id.clone());
                    div.unknown.push(id.clone());
                    PhaseTruth::Unknown
                }
                Some(coord_op) => match (landed_here.is_landed(), coord_op) {
                    (true, Opinion::Status(PhaseStatus::Completed)) => PhaseTruth::Landed,
                    (true, Opinion::Status(PhaseStatus::InProgress | PhaseStatus::Blocked)) => {
                        div.conflicts.push(id.clone());
                        PhaseTruth::Conflict(ConflictKind::Rework)
                    }
                    (true, Opinion::Status(PhaseStatus::Planned)) => {
                        div.conflicts.push(id.clone());
                        PhaseTruth::Conflict(ConflictKind::ReworkReset)
                    }
                    // Landed but the coord sheet is malformed: landed stands,
                    // anomaly noted, divergence suppressed.
                    (true, Opinion::Anomaly) => {
                        div.anomalies.push(id.clone());
                        PhaseTruth::Landed
                    }
                    (
                        false,
                        Opinion::Status(
                            s @ (PhaseStatus::InProgress
                            | PhaseStatus::Blocked
                            | PhaseStatus::Completed),
                        ),
                    ) => {
                        note_disagreement(local, &id, s, &mut div);
                        PhaseTruth::InFlight(s.as_str().to_string())
                    }
                    (false, Opinion::Status(PhaseStatus::Planned)) => {
                        note_disagreement(local, &id, PhaseStatus::Planned, &mut div);
                        PhaseTruth::Planned
                    }
                    // Not landed and the coord sheet is malformed → anomaly.
                    (false, Opinion::Anomaly) => {
                        div.anomalies.push(id.clone());
                        PhaseTruth::Anomaly
                    }
                },
            },
        };
        out.push((id, truth));
    }

    (out, div)
}

/// Record an opinionated disagreement when the local sheet holds a differing
/// concrete status from the (non-landed) coord sheet. Anomaly/absent local
/// sheets never disagree (anomaly suppresses divergence).
fn note_disagreement(
    local: &[(String, StemStatus<'_>)],
    id: &str,
    coord_status: PhaseStatus,
    div: &mut Divergence,
) {
    if let Some(Opinion::Status(local_status)) = opinion_at(local, id)
        && local_status != coord_status
    {
        div.disagreements.push(id.to_string());
    }
}

/// Per-phase status reader: mirrors `phase_rollup`'s IO (`phases_dir` +
/// `existing_phase_stems` + `read_phase_status`) but keeps phases **distinct**
/// instead of folding to bucket counts (SL-190 EX-4). Returns, per phase, its
/// canonical `PHASE-NN` id (via `phase_id_from_stem`) and `Option<status>` —
/// `None` for a `.md`-only / unparseable `.toml`. The caller maps
/// `Some → StemStatus::Toml` / `None → StemStatus::MissingToml`. Order is the
/// deterministic `existing_phase_stems` (`BTreeSet`) order.
pub(crate) fn read_phase_statuses(
    project_root: &Path,
    slice_id: u32,
) -> anyhow::Result<Vec<(String, Option<String>)>> {
    let dir = phases_dir(project_root, slice_id);
    let mut out = Vec::new();
    for stem in existing_phase_stems(&dir)? {
        let status = read_phase_status(&dir, &stem)?;
        out.push((phase_id_from_stem(&stem), status));
    }
    Ok(out)
}

// ---------------------------------------------------------------------------
// Reconcile writer (SL-190 PHASE-03) — status-only, no registry side effects
// ---------------------------------------------------------------------------

/// What the reconcile writer should do with one phase, given its resolved
/// composite [`PhaseTruth`] (SL-190 EX-4). Distinguishes an enforced status
/// (`Write`) from the two silences: `Skip` (a disagreement the verb must not
/// auto-resolve — reported, never written) and `Leave` (the composite has no
/// opinion, so a locally-set status survives untouched).
#[derive(Debug, Clone, PartialEq, Eq)]
pub(crate) enum ReconcileAction {
    /// Composite has an opinion — write this status to the primary sheet.
    Write(PhaseStatus),
    /// CONFLICT / UNKNOWN / anomaly — skip and report, never auto-written.
    Skip,
    /// Composite is silent (a `Local`-only phase) — leave the sheet as-is.
    Leave,
}

/// Map a resolved [`PhaseTruth`] to the reconcile writer's action (SL-190 EX-4,
/// design "Reconcile conflict rule"). `Landed` writes `completed`; `InFlight(s)`
/// writes `s`; `Planned` writes `planned`; `Conflict` / `Unknown` / `Anomaly` are
/// SKIPPED (reported, not written); `Local` is LEFT (the composite is silent — a
/// locally-completed inline phase absent from the landed oracle must never be
/// regressed). Pure and total; the `InFlight` status string is re-parsed through
/// the single `PhaseStatus` vocabulary (an unrecognised string degrades to skip).
pub(crate) fn reconcile_action(truth: &PhaseTruth) -> ReconcileAction {
    match truth {
        PhaseTruth::Landed => ReconcileAction::Write(PhaseStatus::Completed),
        PhaseTruth::InFlight(s) => match PhaseStatus::from_str(s, false) {
            Ok(ps) => ReconcileAction::Write(ps),
            Err(_) => ReconcileAction::Skip,
        },
        PhaseTruth::Planned => ReconcileAction::Write(PhaseStatus::Planned),
        PhaseTruth::Conflict(_) | PhaseTruth::Unknown | PhaseTruth::Anomaly => {
            ReconcileAction::Skip
        }
        PhaseTruth::Local(_) => ReconcileAction::Leave,
    }
}

/// Status-only reconcile writer (SL-190 PHASE-03, EX-1). Sets ONLY `status` (and
/// stamps `last_updated`) on the phase sheet — NO `[[progress]]` audit row, NO
/// `capture_phase_boundary`, NO `record_source_delta`/`forget_source_delta`.
/// Unlike [`set_phase_status`] it must NOT mutate the source-delta registry it is
/// reconciled FROM: doing so would be a read-then-clobber-your-own-truth cycle
/// (design "Reconcile writer"). Shares the edit-preserving skeleton via
/// [`edit_phase_sheet`] (DRY).
///
/// Idempotent by construction: when the sheet already holds `status` the write is
/// skipped entirely (returns `Ok(false)`), so a re-run leaves the sheet
/// byte-identical — no `last_updated` churn. Returns `Ok(true)` iff it wrote.
/// `now` is supplied by the shell (the clock stays out of this layer).
pub(crate) fn reconcile_phase_status(
    project_root: &Path,
    slice_id: u32,
    phase_id: &str,
    status: PhaseStatus,
    now: &str,
) -> anyhow::Result<bool> {
    let stem = phase_stem(phase_id)?;
    let dir = phases_dir(project_root, slice_id);
    // Idempotence: a phase already at its target status is a no-op — skip the
    // write so a second reconcile is byte-identical (no last_updated restamp).
    if read_phase_status(&dir, &stem)?.as_deref() == Some(status.as_str()) {
        return Ok(false);
    }
    edit_phase_sheet(project_root, slice_id, phase_id, |table| {
        table.insert("status", toml_edit::value(status.as_str()));
        table.insert("last_updated", toml_edit::value(now));
        Ok(())
    })?;
    Ok(true)
}

// ---------------------------------------------------------------------------
// Tests
// ---------------------------------------------------------------------------

#[cfg(test)]
mod tests {
    use super::*;

    fn plan(ids: &[&str]) -> Plan {
        Plan {
            phases: ids
                .iter()
                .map(|id| PlanPhase {
                    id: (*id).to_string(),
                    name: String::new(),
                    objective: String::new(),
                    entrance_criteria: Vec::new(),
                    exit_criteria: Vec::new(),
                    verification: Vec::new(),
                })
                .collect(),
        }
    }

    /// A slice dir must exist for the symlink refresh to land.
    fn make_slice_dir(root: &Path, slice_id: u32) {
        fs::create_dir_all(root.join(SLICE_DIR).join(format!("{slice_id:03}"))).unwrap();
    }

    // --- phase_stem ---

    #[test]
    fn phase_stem_derives_and_validates() {
        assert_eq!(phase_stem("PHASE-01").unwrap(), "phase-01");
        assert_eq!(phase_stem("PHASE-137").unwrap(), "phase-137");
    }

    #[test]
    fn phase_stem_rejects_malformed_ids() {
        for bad in [
            "",
            "PHASE-",
            "phase-01",
            "PHASE-1a",
            "PHASE-../x",
            "PHASE-0/1",
            ".PHASE-01",
            "P01",
        ] {
            assert!(phase_stem(bad).is_err(), "{bad:?} should be rejected");
        }
    }

    // --- init_phases ---

    #[test]
    fn init_phases_materialises_each_declared_phase() {
        let dir = tempfile::tempdir().unwrap();
        let root = dir.path();
        make_slice_dir(root, 4);

        let report = init_phases(root, 4, &plan(&["PHASE-01", "PHASE-02"]), false).unwrap();
        assert_eq!(report.created, vec!["PHASE-01", "PHASE-02"]);

        let phases = phases_dir(root, 4);
        for stem in ["phase-01", "phase-02"] {
            assert!(phases.join(format!("{stem}.toml")).is_file());
            assert!(phases.join(format!("{stem}.md")).is_file());
        }
        let tracking = fs::read_to_string(phases.join("phase-01.toml")).unwrap();
        assert!(tracking.contains("phase   = \"PHASE-01\""));
        assert!(tracking.contains("status  = \"planned\""));

        // writes land ONLY under .doctrine/state (the boundary invariant);
        // nothing tracking-shaped under the authored slice dir.
        assert!(!root.join(SLICE_DIR).join("004/phase-01.toml").exists());
    }

    #[test]
    fn init_phases_is_idempotent_and_preserves_edits() {
        let dir = tempfile::tempdir().unwrap();
        let root = dir.path();
        make_slice_dir(root, 4);
        let p = plan(&["PHASE-01"]);

        init_phases(root, 4, &p, false).unwrap();
        // hand-edit the sheet
        let sheet = phases_dir(root, 4).join("phase-01.md");
        fs::write(&sheet, "EDITED").unwrap();

        let report = init_phases(root, 4, &p, false).unwrap();
        assert!(
            report.created.is_empty(),
            "no re-creation on the no-drift path"
        );
        assert_eq!(
            fs::read_to_string(&sheet).unwrap(),
            "EDITED",
            "edits survive"
        );
    }

    #[test]
    fn init_phases_completes_a_crash_partial_phase() {
        let dir = tempfile::tempdir().unwrap();
        let root = dir.path();
        make_slice_dir(root, 4);
        let phases = phases_dir(root, 4);
        fs::create_dir_all(&phases).unwrap();
        // simulate a crash after the .toml but before the .md
        fs::write(phases.join("phase-01.toml"), "partial").unwrap();

        let report = init_phases(root, 4, &plan(&["PHASE-01"]), false).unwrap();
        assert_eq!(
            report.created,
            vec!["PHASE-01"],
            "the missing file completes the phase"
        );
        assert!(phases.join("phase-01.md").is_file());
        // the pre-existing .toml is left as-is (per-file skip)
        assert_eq!(
            fs::read_to_string(phases.join("phase-01.toml")).unwrap(),
            "partial"
        );
    }

    #[test]
    fn init_phases_reports_orphans_without_removing_them() {
        let dir = tempfile::tempdir().unwrap();
        let root = dir.path();
        make_slice_dir(root, 4);

        // start with two phases, then rename PHASE-02 → PHASE-03 in the plan
        init_phases(root, 4, &plan(&["PHASE-01", "PHASE-02"]), false).unwrap();
        let report = init_phases(root, 4, &plan(&["PHASE-01", "PHASE-03"]), false).unwrap();

        assert_eq!(report.created, vec!["PHASE-03"]);
        assert_eq!(report.orphan, vec!["PHASE-02"]);
        assert!(report.pruned.is_empty());
        // orphan tracking is NOT silently removed
        assert!(phases_dir(root, 4).join("phase-02.toml").is_file());
    }

    #[test]
    fn init_phases_rejects_a_malformed_id_before_writing_anything() {
        let dir = tempfile::tempdir().unwrap();
        let root = dir.path();
        make_slice_dir(root, 4);

        let err = init_phases(root, 4, &plan(&["PHASE-01", "bad", "PHASE-03"]), false).unwrap_err();
        assert!(err.to_string().contains("must match PHASE-<digits>"));
        // the valid earlier phase did not leak — nothing was materialised
        assert!(!phases_dir(root, 4).join("phase-01.toml").exists());
    }

    #[test]
    fn init_phases_prunes_orphans_only_when_asked() {
        let dir = tempfile::tempdir().unwrap();
        let root = dir.path();
        make_slice_dir(root, 4);

        init_phases(root, 4, &plan(&["PHASE-01", "PHASE-02"]), false).unwrap();
        let report = init_phases(root, 4, &plan(&["PHASE-01"]), true).unwrap();

        assert_eq!(report.pruned, vec!["PHASE-02"]);
        assert!(report.orphan.is_empty());
        let phases = phases_dir(root, 4);
        assert!(!phases.join("phase-02.toml").exists());
        assert!(!phases.join("phase-02.md").exists());
        assert!(phases.join("phase-01.toml").is_file());
    }

    #[test]
    fn init_phases_refreshes_the_convenience_symlink() {
        let dir = tempfile::tempdir().unwrap();
        let root = dir.path();
        make_slice_dir(root, 4);

        init_phases(root, 4, &plan(&["PHASE-01"]), false).unwrap();
        let link = root.join(SLICE_DIR).join("004/phases");
        // the link must *resolve* to the canonical state dir — not merely string-
        // match a hand-written relative target, which would pass even if the two
        // sides of the convention drifted apart.
        assert_eq!(
            fs::canonicalize(&link).unwrap(),
            fs::canonicalize(phases_dir(root, 4)).unwrap(),
        );
    }

    #[test]
    fn init_phases_creates_the_state_parent_on_demand() {
        let dir = tempfile::tempdir().unwrap();
        let root = dir.path();
        make_slice_dir(root, 4);
        assert!(!root.join(STATE_SLICE_DIR).exists());

        init_phases(root, 4, &plan(&["PHASE-01"]), false).unwrap();
        assert!(phases_dir(root, 4).is_dir());
    }

    // --- set_phase_status ---

    fn init_one(root: &Path) {
        make_slice_dir(root, 4);
        init_phases(root, 4, &plan(&["PHASE-01"]), false).unwrap();
    }

    #[test]
    fn set_phase_status_sets_fields_and_appends_progress() {
        let dir = tempfile::tempdir().unwrap();
        let root = dir.path();
        init_one(root);

        set_phase_status(
            root,
            4,
            "PHASE-01",
            PhaseStatus::InProgress,
            Some("kickoff"),
            "2026-06-04T10:00:00Z",
        )
        .unwrap();
        let doc = fs::read_to_string(phases_dir(root, 4).join("phase-01.toml"))
            .unwrap()
            .parse::<toml_edit::DocumentMut>()
            .unwrap();

        assert_eq!(doc["status"].as_str(), Some("in_progress"));
        assert_eq!(doc["started"].as_str(), Some("2026-06-04T10:00:00Z"));
        assert_eq!(doc["last_updated"].as_str(), Some("2026-06-04T10:00:00Z"));
        assert_eq!(doc["completed"].as_str(), Some("")); // not yet
        let progress = doc["progress"].as_array_of_tables().unwrap();
        assert_eq!(progress.len(), 1);
        let row = progress.get(0).unwrap();
        assert_eq!(row["status"].as_str(), Some("in_progress"));
        assert_eq!(row["note"].as_str(), Some("kickoff"));
    }

    #[test]
    fn set_phase_status_stamps_started_once_and_completed_on_completion() {
        let dir = tempfile::tempdir().unwrap();
        let root = dir.path();
        init_one(root);

        set_phase_status(root, 4, "PHASE-01", PhaseStatus::InProgress, None, "T1").unwrap();
        set_phase_status(root, 4, "PHASE-01", PhaseStatus::InProgress, None, "T2").unwrap();
        set_phase_status(root, 4, "PHASE-01", PhaseStatus::Completed, None, "T3").unwrap();

        let doc = fs::read_to_string(phases_dir(root, 4).join("phase-01.toml"))
            .unwrap()
            .parse::<toml_edit::DocumentMut>()
            .unwrap();
        assert_eq!(
            doc["started"].as_str(),
            Some("T1"),
            "started stamped once, not overwritten"
        );
        assert_eq!(doc["completed"].as_str(), Some("T3"));
        assert_eq!(doc["status"].as_str(), Some("completed"));
        assert_eq!(doc["progress"].as_array_of_tables().unwrap().len(), 3);
    }

    #[test]
    fn set_phase_status_clears_completed_on_reopen() {
        let dir = tempfile::tempdir().unwrap();
        let root = dir.path();
        init_one(root);

        set_phase_status(root, 4, "PHASE-01", PhaseStatus::Completed, None, "T1").unwrap();
        set_phase_status(root, 4, "PHASE-01", PhaseStatus::InProgress, None, "T2").unwrap();

        let doc = fs::read_to_string(phases_dir(root, 4).join("phase-01.toml"))
            .unwrap()
            .parse::<toml_edit::DocumentMut>()
            .unwrap();
        assert_eq!(doc["status"].as_str(), Some("in_progress"));
        assert_eq!(
            doc["completed"].as_str(),
            Some(""),
            "reopen clears the stale completion stamp"
        );
    }

    #[test]
    fn set_phase_status_preserves_comments_and_unknown_keys() {
        let dir = tempfile::tempdir().unwrap();
        let root = dir.path();
        init_one(root);
        let path = phases_dir(root, 4).join("phase-01.toml");
        // hand-edit: a comment and an unknown key the tool does not model
        let edited = format!(
            "{}\n# a hand-written note\nowner = \"alice\"\n",
            fs::read_to_string(&path).unwrap()
        );
        fs::write(&path, edited).unwrap();

        set_phase_status(root, 4, "PHASE-01", PhaseStatus::Blocked, None, "T1").unwrap();

        let after = fs::read_to_string(&path).unwrap();
        assert!(after.contains("# a hand-written note"), "comment survives");
        assert!(after.contains("owner = \"alice\""), "unknown key survives");
        assert!(after.contains("status  = \"blocked\"") || after.contains("status = \"blocked\""));
    }

    #[test]
    fn set_phase_status_resolves_by_id_blind_to_the_symlink() {
        let dir = tempfile::tempdir().unwrap();
        let root = dir.path();
        init_one(root);
        // remove the convenience symlink entirely
        fs::remove_file(root.join(SLICE_DIR).join("004/phases")).unwrap();

        set_phase_status(root, 4, "PHASE-01", PhaseStatus::Completed, None, "T1").unwrap();
        let doc = fs::read_to_string(phases_dir(root, 4).join("phase-01.toml"))
            .unwrap()
            .parse::<toml_edit::DocumentMut>()
            .unwrap();
        assert_eq!(doc["status"].as_str(), Some("completed"));
    }

    #[test]
    fn set_phase_status_errors_when_tracking_absent() {
        let dir = tempfile::tempdir().unwrap();
        let root = dir.path();
        make_slice_dir(root, 4);
        let err =
            set_phase_status(root, 4, "PHASE-99", PhaseStatus::InProgress, None, "T1").unwrap_err();
        assert!(err.to_string().contains("Phase tracking not found"));
    }

    // --- fold_rollup (pure) ---

    #[test]
    fn fold_rollup_empty_is_all_zero() {
        assert_eq!(fold_rollup(&[]), PhaseRollup::default());
    }

    #[test]
    fn fold_rollup_counts_each_known_status_into_its_bucket() {
        let stems = [
            StemStatus::Toml("completed"),
            StemStatus::Toml("completed"),
            StemStatus::Toml("in_progress"),
            StemStatus::Toml("planned"),
            StemStatus::Toml("blocked"),
        ];
        let r = fold_rollup(&stems);
        assert_eq!(
            r,
            PhaseRollup {
                planned: 1,
                in_progress: 1,
                completed: 2,
                blocked: 1,
                unknown: 0,
                missing_toml: 0,
            }
        );
    }

    #[test]
    fn fold_rollup_buckets_unknown_status_and_missing_toml_separately() {
        let stems = [
            StemStatus::Toml("completed"),
            StemStatus::Toml("garbage"), // typo / outside the enum
            StemStatus::MissingToml,     // .md-only crash-partial
        ];
        let r = fold_rollup(&stems);
        assert_eq!(r.completed, 1);
        assert_eq!(r.unknown, 1);
        assert_eq!(r.missing_toml, 1);
        // every stem is counted — nothing silently dropped (R-F4)
        let counted =
            r.planned + r.in_progress + r.completed + r.blocked + r.unknown + r.missing_toml;
        assert_eq!(counted, 3);
    }

    // --- phase_rollup (IO) ---

    fn write_phase_toml(dir: &Path, stem: &str, status: &str) {
        fs::create_dir_all(dir).unwrap();
        fs::write(
            dir.join(format!("{stem}.toml")),
            format!("status = \"{status}\"\n"),
        )
        .unwrap();
    }

    #[test]
    fn phase_rollup_is_none_when_untracked() {
        let dir = tempfile::tempdir().unwrap();
        let root = dir.path();
        // no state tree at all
        assert_eq!(phase_rollup(root, 9).unwrap(), None);
        // dir exists but holds no phase files
        fs::create_dir_all(phases_dir(root, 9)).unwrap();
        assert_eq!(phase_rollup(root, 9).unwrap(), None);
    }

    #[test]
    fn phase_rollup_counts_materialised_phases() {
        let dir = tempfile::tempdir().unwrap();
        let root = dir.path();
        let phases = phases_dir(root, 9);
        write_phase_toml(&phases, "phase-01", "completed");
        write_phase_toml(&phases, "phase-02", "completed");
        write_phase_toml(&phases, "phase-03", "in_progress");

        let r = phase_rollup(root, 9).unwrap().unwrap();
        assert_eq!(r.completed, 2);
        assert_eq!(r.in_progress, 1);
    }

    #[test]
    fn phase_rollup_md_only_stem_is_missing_toml_not_dropped() {
        let dir = tempfile::tempdir().unwrap();
        let root = dir.path();
        let phases = phases_dir(root, 9);
        write_phase_toml(&phases, "phase-01", "completed");
        // phase-02 has only its .md sheet (crash-partial) — still a phase
        fs::write(phases.join("phase-02.md"), "# sheet\n").unwrap();

        let r = phase_rollup(root, 9).unwrap().unwrap();
        assert_eq!(r.completed, 1);
        assert_eq!(r.missing_toml, 1);
    }

    #[test]
    fn phase_rollup_unparseable_or_typo_status_is_surfaced() {
        let dir = tempfile::tempdir().unwrap();
        let root = dir.path();
        let phases = phases_dir(root, 9);
        write_phase_toml(&phases, "phase-01", "donezo"); // typo → unknown
        fs::write(phases.join("phase-02.toml"), "this is not = valid toml\n").unwrap();

        let r = phase_rollup(root, 9).unwrap().unwrap();
        assert_eq!(r.unknown, 1, "typo status → unknown");
        assert_eq!(r.missing_toml, 1, "unparseable .toml → missing_toml");
    }

    // --- resolve_phase_truth (pure core, SL-190 PHASE-01) -------------------

    /// VT-1: table-driven over the full design total table — LANDED, CONFLICT
    /// (rework + rework-reset), IN-FLIGHT, PLANNED, LOCAL, ANOMALY, and
    /// phase-set drift. Asserts both the per-phase `PhaseTruth` and, where
    /// relevant, `Divergence.assert_worthy()`.
    #[test]
    fn resolve_phase_truth_covers_full_design_table() {
        let p = || "PHASE-01".to_string();

        // (name, landed, coord-sheet status, expected truth, expected assert).
        // A live coord tree holds `coord_status`; local mirrors it so no
        // spurious opinionated disagreement is recorded on these rows.
        let grid: &[(&str, LandedSignal, &str, PhaseTruth, bool)] = &[
            // LANDED: ref/cache present + coord silent-or-completed.
            (
                "landed+completed",
                LandedSignal::RefPresent,
                "completed",
                PhaseTruth::Landed,
                false,
            ),
            // CONFLICT rework: landed + coord back to in_progress/blocked.
            (
                "landed+in_progress→rework",
                LandedSignal::CachePresent,
                "in_progress",
                PhaseTruth::Conflict(ConflictKind::Rework),
                true,
            ),
            (
                "landed+blocked→rework",
                LandedSignal::RefPresent,
                "blocked",
                PhaseTruth::Conflict(ConflictKind::Rework),
                true,
            ),
            // CONFLICT rework-reset: landed + coord reset to planned.
            (
                "landed+planned→rework-reset",
                LandedSignal::CachePresent,
                "planned",
                PhaseTruth::Conflict(ConflictKind::ReworkReset),
                true,
            ),
            // LANDED + anomaly-noted: coord sheet malformed, divergence suppressed.
            (
                "landed+garbage→landed(anomaly-noted)",
                LandedSignal::RefPresent,
                "garbage",
                PhaseTruth::Landed,
                false,
            ),
            // IN-FLIGHT: not landed, coord actively working.
            (
                "absent+in_progress→in-flight",
                LandedSignal::Absent,
                "in_progress",
                PhaseTruth::InFlight("in_progress".into()),
                false,
            ),
            // PLANNED: not landed, coord planned.
            (
                "absent+planned→planned",
                LandedSignal::Absent,
                "planned",
                PhaseTruth::Planned,
                false,
            ),
            // ANOMALY: not landed, coord sheet malformed — surface, suppress.
            (
                "absent+garbage→anomaly",
                LandedSignal::Absent,
                "garbage",
                PhaseTruth::Anomaly,
                false,
            ),
        ];

        for (name, landed, coord_status, want, want_assert) in grid {
            let coord_status: &str = coord_status;
            let landed_map = vec![(p(), *landed)];
            let coord_map = vec![(p(), StemStatus::Toml(coord_status))];
            let local_map = vec![(p(), StemStatus::Toml(coord_status))];
            let (truths, div) = resolve_phase_truth(&landed_map, Some(&coord_map), &local_map);
            assert_eq!(truths, vec![(p(), want.clone())], "PhaseTruth for {name}");
            assert_eq!(
                div.assert_worthy(),
                *want_assert,
                "assert_worthy for {name}"
            );
        }

        // ANOMALY via a `.md`-only crash-partial (MissingToml), landed + absent.
        {
            let landed_map = vec![(p(), LandedSignal::RefPresent)];
            let coord_map = vec![(p(), StemStatus::MissingToml)];
            let local_map = vec![(p(), StemStatus::MissingToml)];
            let (truths, div) = resolve_phase_truth(&landed_map, Some(&coord_map), &local_map);
            assert_eq!(truths, vec![(p(), PhaseTruth::Landed)]);
            assert!(!div.assert_worthy(), "anomaly suppresses divergence");
        }
        {
            let landed_map = vec![(p(), LandedSignal::Absent)];
            let coord_map = vec![(p(), StemStatus::MissingToml)];
            let local_map = vec![(p(), StemStatus::MissingToml)];
            let (truths, div) = resolve_phase_truth(&landed_map, Some(&coord_map), &local_map);
            assert_eq!(truths, vec![(p(), PhaseTruth::Anomaly)]);
            assert!(!div.assert_worthy());
            assert!(div.anomalies.contains(&p()), "anomaly surfaced in summary");
        }

        // LANDED with NO coord tree (design "(none)" row).
        {
            let landed_map = vec![(p(), LandedSignal::RefPresent)];
            let local_map = vec![(p(), StemStatus::Toml("planned"))];
            let (truths, _div) = resolve_phase_truth(&landed_map, None, &local_map);
            assert_eq!(truths, vec![(p(), PhaseTruth::Landed)]);
        }

        // LOCAL: not landed, NO coord tree → the local sheet's status.
        {
            let landed_map = vec![(p(), LandedSignal::Absent)];
            let local_map = vec![(p(), StemStatus::Toml("in_progress"))];
            let (truths, div) = resolve_phase_truth(&landed_map, None, &local_map);
            assert_eq!(truths, vec![(p(), PhaseTruth::Local("in_progress".into()))]);
            assert!(!div.assert_worthy(), "LOCAL alone is not assert-worthy");
        }

        // Opinionated disagreement (no landed): coord vs local differ → assert.
        {
            let landed_map = vec![(p(), LandedSignal::Absent)];
            let coord_map = vec![(p(), StemStatus::Toml("in_progress"))];
            let local_map = vec![(p(), StemStatus::Toml("completed"))];
            let (truths, div) = resolve_phase_truth(&landed_map, Some(&coord_map), &local_map);
            assert_eq!(
                truths,
                vec![(p(), PhaseTruth::InFlight("in_progress".into()))]
            );
            assert!(
                div.assert_worthy(),
                "coord vs local disagreement arms --assert"
            );
        }

        // Phase-set drift: coord tree present but this phase absent from it.
        {
            let q = || "PHASE-02".to_string();
            let landed_map = vec![(q(), LandedSignal::Absent)];
            let coord_map: Vec<(String, StemStatus<'_>)> = vec![]; // present tree, phase absent
            let local_map = vec![(q(), StemStatus::Toml("planned"))];
            let (truths, div) = resolve_phase_truth(&landed_map, Some(&coord_map), &local_map);
            assert_eq!(
                truths,
                vec![(q(), PhaseTruth::Unknown)],
                "phase-set drift → Unknown, never dropped"
            );
            assert!(
                div.phase_set_mismatch.contains(&q()),
                "phase-set mismatch surfaced"
            );
            assert!(div.unknown.contains(&q()), "Unknown recorded in summary");
            assert!(
                !div.assert_worthy(),
                "phase-set drift does NOT arm --assert"
            );
        }

        // Union is deterministic (sorted) and drops no phase.
        {
            let landed_map = vec![
                ("PHASE-02".to_string(), LandedSignal::RefPresent),
                ("PHASE-01".to_string(), LandedSignal::Absent),
            ];
            let coord_map = vec![
                ("PHASE-01".to_string(), StemStatus::Toml("in_progress")),
                ("PHASE-02".to_string(), StemStatus::Toml("completed")),
            ];
            let local_map = vec![
                ("PHASE-01".to_string(), StemStatus::Toml("in_progress")),
                ("PHASE-02".to_string(), StemStatus::Toml("completed")),
            ];
            let (truths, _div) = resolve_phase_truth(&landed_map, Some(&coord_map), &local_map);
            let ids: Vec<&str> = truths.iter().map(|(id, _)| id.as_str()).collect();
            assert_eq!(ids, vec!["PHASE-01", "PHASE-02"], "deterministic union");
            assert_eq!(truths.len(), 2, "no phase dropped");
        }
    }

    /// VT-2: the per-phase reader returns each phase's status without collapsing
    /// to counts — its pairs map to the right `StemStatus` per phase.
    #[test]
    fn read_phase_statuses_keeps_phases_distinct() {
        let dir = tempfile::tempdir().unwrap();
        let root = dir.path();
        let phases = phases_dir(root, 9);
        write_phase_toml(&phases, "phase-01", "completed");
        write_phase_toml(&phases, "phase-03", "in_progress");
        // phase-02 has only its .md sheet (crash-partial) → MissingToml.
        fs::write(phases.join("phase-02.md"), "# sheet\n").unwrap();

        let got = read_phase_statuses(root, 9).unwrap();
        // The caller's mapping: Some → Toml, None → MissingToml.
        let as_stem: Vec<(String, StemStatus<'_>)> = got
            .iter()
            .map(|(id, s)| {
                (
                    id.clone(),
                    match s {
                        Some(status) => StemStatus::Toml(status.as_str()),
                        None => StemStatus::MissingToml,
                    },
                )
            })
            .collect();

        assert_eq!(
            as_stem,
            vec![
                ("PHASE-01".to_string(), StemStatus::Toml("completed")),
                ("PHASE-02".to_string(), StemStatus::MissingToml),
                ("PHASE-03".to_string(), StemStatus::Toml("in_progress")),
            ],
            "each phase's StemStatus preserved without collapsing to counts"
        );
    }

    // --- recorded source-delta registry (SL-147 PHASE-02) ------------------

    /// Run git in `dir` with a pinned identity; panic on failure, return stdout.
    fn git(dir: &Path, args: &[&str]) -> String {
        let out = std::process::Command::new("git")
            .arg("-C")
            .arg(dir)
            .args(args)
            .env("GIT_AUTHOR_NAME", "Doctrine Test")
            .env("GIT_AUTHOR_EMAIL", "test@doctrine.invalid")
            .env("GIT_COMMITTER_NAME", "Doctrine Test")
            .env("GIT_COMMITTER_EMAIL", "test@doctrine.invalid")
            .output()
            .expect("spawn git");
        assert!(
            out.status.success(),
            "git {args:?} failed: {}",
            String::from_utf8_lossy(&out.stderr).trim()
        );
        String::from_utf8_lossy(&out.stdout).trim().to_string()
    }

    /// A fresh repo with one commit on `main`; returns its canonical path.
    fn init_repo(dir: &Path) -> PathBuf {
        fs::create_dir_all(dir).unwrap();
        git(dir, &["init", "-q", "-b", "main"]);
        git(dir, &["commit", "-q", "--allow-empty", "-m", "root"]);
        fs::canonicalize(dir).unwrap()
    }

    // Generic registry-row helper: provenance is irrelevant to the upsert/round-trip
    // contracts these tests assert, so it carries the neutral `Unknown`. The merge
    // tests below construct rows with explicit provenance instead.
    fn row(phase: &str, start: &str, end: &str) -> BoundaryRow {
        BoundaryRow {
            phase: phase.into(),
            code_start_oid: start.into(),
            code_end_oid: end.into(),
            provenance: Provenance::Unknown,
        }
    }

    // VT-2: round-trip — write rows then read them back identically.
    #[test]
    fn source_deltas_round_trip_through_disk() {
        let tmp = tempfile::tempdir().unwrap();
        let repo = init_repo(&tmp.path().join("repo"));
        let a = git(&repo, &["rev-parse", "HEAD"]);
        git(&repo, &["commit", "-q", "--allow-empty", "-m", "two"]);
        let head = git(&repo, &["rev-parse", "HEAD"]);

        // Absent file reads as empty, not an error.
        assert!(read_source_deltas(&repo, 147).unwrap().is_empty());

        record_source_delta(&repo, 147, row("PHASE-01", &a, &a)).unwrap();
        record_source_delta(&repo, 147, row("PHASE-02", &a, &head)).unwrap();

        let rows = read_source_deltas(&repo, 147).unwrap();
        assert_eq!(
            rows,
            vec![row("PHASE-01", &a, &a), row("PHASE-02", &a, &head)]
        );
    }

    // VT-2: the file lands under the slice's runtime tree with `[[boundary]]`.
    #[test]
    fn source_deltas_path_is_slice_scoped_runtime_state() {
        let tmp = tempfile::tempdir().unwrap();
        let repo = init_repo(&tmp.path().join("repo"));
        let head = git(&repo, &["rev-parse", "HEAD"]);
        record_source_delta(&repo, 147, row("PHASE-01", &head, &head)).unwrap();

        let path = boundaries_path(&repo, 147).unwrap();
        assert!(
            path.ends_with(".doctrine/state/slice/147/boundaries.toml"),
            "{path:?}"
        );
        let text = fs::read_to_string(&path).unwrap();
        assert!(text.contains("[[boundary]]"), "table header: {text}");
        assert!(text.contains("phase = \"PHASE-01\""), "{text}");
    }

    // VT-1: a re-record of the same phase UPSERTs (replaces) rather than dupes.
    #[test]
    fn record_upserts_by_phase() {
        let tmp = tempfile::tempdir().unwrap();
        let repo = init_repo(&tmp.path().join("repo"));
        let a = git(&repo, &["rev-parse", "HEAD"]);
        git(&repo, &["commit", "-q", "--allow-empty", "-m", "two"]);
        let head = git(&repo, &["rev-parse", "HEAD"]);

        record_source_delta(&repo, 147, row("PHASE-01", &a, &a)).unwrap();
        record_source_delta(&repo, 147, row("PHASE-01", &a, &head)).unwrap();

        let rows = read_source_deltas(&repo, 147).unwrap();
        assert_eq!(rows, vec![row("PHASE-01", &a, &head)], "one row, replaced");
    }

    // VT-2: the sticky provenance merge is keyed on the INCOMING row and runs
    // INSIDE record_source_delta's RMW (atomic, not a caller pre-read). Landing
    // writers (Solo/Funnel) are authoritative; Manual never reclassifies an
    // existing path (incl. a legacy Unknown); a fresh phase stores the incoming
    // value as-is. The range upsert is unaffected.
    #[test]
    fn record_source_delta_merges_provenance_keyed_on_incoming() {
        let tmp = tempfile::tempdir().unwrap();
        let repo = init_repo(&tmp.path().join("repo"));
        let a = git(&repo, &["rev-parse", "HEAD"]);
        git(&repo, &["commit", "-q", "--allow-empty", "-m", "two"]);
        let b = git(&repo, &["rev-parse", "HEAD"]);

        let prov_row = |phase: &str, p: Provenance| BoundaryRow {
            phase: phase.into(),
            code_start_oid: a.clone(),
            code_end_oid: b.clone(),
            provenance: p,
        };
        let recorded = |phase: &str| -> Provenance {
            read_source_deltas(&repo, 200)
                .unwrap()
                .into_iter()
                .find(|r| r.phase == phase)
                .expect("row present")
                .provenance
        };

        // Incoming Manual preserves any existing landing path (a correction never
        // reclassifies) — including a legacy Unknown.
        for (phase, existing) in [
            ("PHASE-01", Provenance::Funnel),
            ("PHASE-02", Provenance::Solo),
            ("PHASE-03", Provenance::Unknown),
        ] {
            record_source_delta(&repo, 200, prov_row(phase, existing)).unwrap();
            record_source_delta(&repo, 200, prov_row(phase, Provenance::Manual)).unwrap();
            assert_eq!(
                recorded(phase),
                existing,
                "Manual must not reclassify {existing:?}"
            );
        }

        // A fresh phase (no existing row) stores the incoming value as-is.
        record_source_delta(&repo, 200, prov_row("PHASE-04", Provenance::Manual)).unwrap();
        assert_eq!(
            recorded("PHASE-04"),
            Provenance::Manual,
            "fresh row keeps incoming"
        );

        // A landing writer is authoritative and overwrites any existing path.
        record_source_delta(&repo, 200, prov_row("PHASE-05", Provenance::Solo)).unwrap();
        record_source_delta(&repo, 200, prov_row("PHASE-05", Provenance::Funnel)).unwrap();
        assert_eq!(
            recorded("PHASE-05"),
            Provenance::Funnel,
            "incoming Funnel overwrites"
        );

        record_source_delta(&repo, 200, prov_row("PHASE-06", Provenance::Funnel)).unwrap();
        record_source_delta(&repo, 200, prov_row("PHASE-06", Provenance::Solo)).unwrap();
        assert_eq!(
            recorded("PHASE-06"),
            Provenance::Solo,
            "incoming Solo overwrites"
        );
    }

    // VT-1 (SL-189): single_commit_boundary derives [S^, S] for a linear
    // non-merge commit, and ERRORS on BOTH a merge commit (>1 parent) and a root
    // commit (0 parents) — neither has a single "own patch".
    #[test]
    fn single_commit_boundary_scopes_own_patch_rejects_merge_and_root() {
        let tmp = tempfile::tempdir().unwrap();
        let repo = init_repo(&tmp.path().join("repo"));
        let root_oid = git(&repo, &["rev-parse", "HEAD"]);

        // Linear non-merge S: its parent is the root commit → [root, S].
        git(&repo, &["commit", "-q", "--allow-empty", "-m", "S"]);
        let s = git(&repo, &["rev-parse", "HEAD"]);

        let built = single_commit_boundary(&repo, &s, Provenance::Manual, "PHASE-01").unwrap();
        assert_eq!(built.code_start_oid, root_oid, "start = S^");
        assert_eq!(built.code_end_oid, s, "end = S");
        assert_eq!(built.phase, "PHASE-01");
        assert_eq!(built.provenance, Provenance::Manual);

        // Merge commit → rejected (two parents, no single own patch).
        git(&repo, &["checkout", "-q", "-b", "side", &root_oid]);
        git(&repo, &["commit", "-q", "--allow-empty", "-m", "side"]);
        git(&repo, &["checkout", "-q", "main"]);
        git(&repo, &["merge", "-q", "--no-ff", "--no-edit", "side"]);
        let merge = git(&repo, &["rev-parse", "HEAD"]);
        assert!(
            single_commit_boundary(&repo, &merge, Provenance::Manual, "PHASE-01").is_err(),
            "merge commit (>1 parent) → rejected"
        );

        // Root commit → rejected (no parent).
        assert!(
            single_commit_boundary(&repo, &root_oid, Provenance::Manual, "PHASE-01").is_err(),
            "root commit (0 parents) → rejected"
        );
    }

    // VT-3: forget_source_delta evicts one phase's row (the reopen-eviction
    // sibling of record_source_delta — design D8, caller is PHASE-03). Record →
    // forget → absent (Ok(true)); forget on an absent phase, or an absent
    // registry file, is a no-op Ok(false), never an error. Siblings survive.
    #[test]
    fn forget_source_delta_evicts_then_is_idempotent() {
        let tmp = tempfile::tempdir().unwrap();
        let repo = init_repo(&tmp.path().join("repo"));
        let a = git(&repo, &["rev-parse", "HEAD"]);

        record_source_delta(&repo, 200, row("PHASE-01", &a, &a)).unwrap();
        record_source_delta(&repo, 200, row("PHASE-02", &a, &a)).unwrap();

        // Evict a present phase → true, only its row gone.
        assert!(forget_source_delta(&repo, 200, "PHASE-01").unwrap());
        assert_eq!(
            read_source_deltas(&repo, 200).unwrap(),
            vec![row("PHASE-02", &a, &a)],
            "only PHASE-01 evicted"
        );

        // Re-forgetting the now-absent phase → false, no error (idempotent).
        assert!(!forget_source_delta(&repo, 200, "PHASE-01").unwrap());

        // Forget against an entirely absent registry file → false, no error.
        assert!(!forget_source_delta(&repo, 999, "PHASE-01").unwrap());
    }

    // VT-2 resolver: a record from a LINKED worktree lands the row in the
    // PRIMARY tree's file (the cross-worktree shared-file contract).
    #[test]
    fn record_from_linked_worktree_targets_primary_tree() {
        let tmp = tempfile::tempdir().unwrap();
        let primary = init_repo(&tmp.path().join("primary"));
        let head = git(&primary, &["rev-parse", "HEAD"]);
        let fork = tmp.path().join("fork");
        git(
            &primary,
            &[
                "worktree",
                "add",
                "-q",
                "-b",
                "feat",
                fork.to_str().unwrap(),
            ],
        );
        let fork = fs::canonicalize(&fork).unwrap();

        // Record from the LINKED worktree.
        record_source_delta(&fork, 147, row("PHASE-01", &head, &head)).unwrap();

        // The file exists under the PRIMARY tree, NOT the fork.
        assert!(
            primary
                .join(".doctrine/state/slice/147/boundaries.toml")
                .exists()
        );
        assert!(
            !fork
                .join(".doctrine/state/slice/147/boundaries.toml")
                .exists()
        );
        // And reads back from either worktree (same resolved path).
        assert_eq!(
            read_source_deltas(&fork, 147).unwrap(),
            vec![row("PHASE-01", &head, &head)]
        );
        assert_eq!(
            read_source_deltas(&primary, 147).unwrap(),
            vec![row("PHASE-01", &head, &head)]
        );
    }

    // VT-1 guard: a non-ancestor (start NOT before end) range is rejected.
    #[test]
    fn guard_rejects_non_ancestor_range() {
        let tmp = tempfile::tempdir().unwrap();
        let repo = init_repo(&tmp.path().join("repo"));
        let a = git(&repo, &["rev-parse", "HEAD"]);
        git(&repo, &["commit", "-q", "--allow-empty", "-m", "two"]);
        let head = git(&repo, &["rev-parse", "HEAD"]);

        // start = later commit, end = earlier → not an ancestor.
        let err = record_source_delta(&repo, 147, row("PHASE-01", &head, &a)).unwrap_err();
        assert!(format!("{err:#}").contains("not an ancestor"), "{err:#}");
        // Nothing was persisted.
        assert!(read_source_deltas(&repo, 147).unwrap().is_empty());
    }

    // VT-1 guard: a merge commit as code_end is rejected.
    #[test]
    fn guard_rejects_merge_code_end() {
        let tmp = tempfile::tempdir().unwrap();
        let repo = init_repo(&tmp.path().join("repo"));
        let base = git(&repo, &["rev-parse", "HEAD"]);
        // Branch A.
        git(&repo, &["commit", "-q", "--allow-empty", "-m", "a"]);
        let a = git(&repo, &["rev-parse", "HEAD"]);
        // Branch B off base.
        git(&repo, &["checkout", "-q", "-b", "side", &base]);
        git(&repo, &["commit", "-q", "--allow-empty", "-m", "b"]);
        // Merge B into A → a 2-parent merge tip.
        git(&repo, &["checkout", "-q", "main"]);
        git(&repo, &["merge", "-q", "--no-ff", "--no-edit", "side"]);
        let merge = git(&repo, &["rev-parse", "HEAD"]);
        assert_eq!(crate::git::parents(&repo, &merge).unwrap().len(), 2);

        let err = record_source_delta(&repo, 147, row("PHASE-01", &a, &merge)).unwrap_err();
        assert!(format!("{err:#}").contains("merge commit"), "{err:#}");
        assert!(read_source_deltas(&repo, 147).unwrap().is_empty());
    }

    // VT-1 guard: a valid ancestor + non-merge pair is accepted and persisted.
    #[test]
    fn guard_accepts_valid_ancestor_non_merge_pair() {
        let tmp = tempfile::tempdir().unwrap();
        let repo = init_repo(&tmp.path().join("repo"));
        let a = git(&repo, &["rev-parse", "HEAD"]);
        git(&repo, &["commit", "-q", "--allow-empty", "-m", "two"]);
        let head = git(&repo, &["rev-parse", "HEAD"]);
        assert!(crate::git::parents(&repo, &head).unwrap().len() <= 1);

        record_source_delta(&repo, 147, row("PHASE-01", &a, &head)).unwrap();
        assert_eq!(
            read_source_deltas(&repo, 147).unwrap(),
            vec![row("PHASE-01", &a, &head)]
        );
    }

    // VT-2: a not-a-repo cwd surfaces a clean named error, never a panic.
    #[test]
    fn record_in_non_repo_is_a_named_error() {
        let tmp = tempfile::tempdir().unwrap();
        let err = record_source_delta(tmp.path(), 147, row("PHASE-01", "x", "y")).unwrap_err();
        let msg = format!("{err:#}");
        assert!(!msg.is_empty(), "named error, not a panic: {msg}");
    }

    // --- solo phase-binding capture (SL-147 PHASE-04, T1) ------------------

    /// A phase sheet under a repo's runtime tree, ready for `set_phase_status`.
    fn seed_phase_sheet(repo: &Path, slice: u32, stem: &str) {
        let dir = phases_dir(repo, slice);
        fs::create_dir_all(&dir).unwrap();
        fs::write(
            dir.join(format!("{stem}.toml")),
            "status = \"planned\"\nstarted = \"\"\ncompleted = \"\"\n",
        )
        .unwrap();
    }

    // VT-1/VT-3: in_progress → completed records the boundary deterministically; a
    // reopen EVICTS the row and clears the stamp (D8/P2-1) so the re-completion records
    // a FRESH range — never a stale start preserved across the reopen.
    #[test]
    fn binding_records_boundary_then_evicts_and_refreshes_on_reopen() {
        let tmp = tempfile::tempdir().unwrap();
        let repo = init_repo(&tmp.path().join("repo"));
        seed_phase_sheet(&repo, 147, "phase-01");

        let start = git(&repo, &["rev-parse", "HEAD"]);
        set_phase_status(&repo, 147, "PHASE-01", PhaseStatus::InProgress, None, "T1").unwrap();
        // Land a code commit, then complete: the row spans start → new HEAD.
        git(&repo, &["commit", "-q", "--allow-empty", "-m", "code"]);
        let end1 = git(&repo, &["rev-parse", "HEAD"]);
        set_phase_status(&repo, 147, "PHASE-01", PhaseStatus::Completed, None, "T2").unwrap();

        assert_eq!(
            read_source_deltas(&repo, 147).unwrap(),
            vec![BoundaryRow {
                provenance: Provenance::Solo,
                ..row("PHASE-01", &start, &end1)
            }],
            "one boundary spanning the phase"
        );

        // Reopen (Completed→non-Completed) EVICTS the recorded row and clears the
        // start-stamp (design D8/P2-1): mid-reopen the registry is empty, so a redo
        // re-captures a FRESH range rather than reusing the stale start.
        set_phase_status(&repo, 147, "PHASE-01", PhaseStatus::InProgress, None, "T3").unwrap();
        assert!(
            read_source_deltas(&repo, 147).unwrap().is_empty(),
            "reopen evicts the recorded row — no stale row survives the reopen"
        );
        // The reopen→in_progress re-stamps a fresh start at the reopen HEAD (== end1,
        // no commit landed between the completion and the reopen).
        let restart = git(&repo, &["rev-parse", "HEAD"]);
        git(&repo, &["commit", "-q", "--allow-empty", "-m", "more"]);
        let end2 = git(&repo, &["rev-parse", "HEAD"]);
        set_phase_status(&repo, 147, "PHASE-01", PhaseStatus::Completed, None, "T4").unwrap();

        assert_eq!(
            read_source_deltas(&repo, 147).unwrap(),
            vec![BoundaryRow {
                provenance: Provenance::Solo,
                ..row("PHASE-01", &restart, &end2)
            }],
            "re-completion records exactly one FRESH row (start re-stamped at reopen, not preserved)"
        );
    }

    // VT-1: a no-commit phase (no code landed between start and completion) records
    // a zero-delta row (start == end), never an error.
    #[test]
    fn binding_records_zero_delta_for_a_no_commit_phase() {
        let tmp = tempfile::tempdir().unwrap();
        let repo = init_repo(&tmp.path().join("repo"));
        seed_phase_sheet(&repo, 147, "phase-01");
        let head = git(&repo, &["rev-parse", "HEAD"]);

        set_phase_status(&repo, 147, "PHASE-01", PhaseStatus::InProgress, None, "T1").unwrap();
        set_phase_status(&repo, 147, "PHASE-01", PhaseStatus::Completed, None, "T2").unwrap();

        assert_eq!(
            read_source_deltas(&repo, 147).unwrap(),
            vec![BoundaryRow {
                provenance: Provenance::Solo,
                ..row("PHASE-01", &head, &head)
            }],
            "zero-delta row, start == end"
        );
    }

    // --- reconcile writer (SL-190 PHASE-03) --------------------------------

    // VT-2: the status-only reconcile writer has NO registry side effects — after a
    // reconcile the `boundaries.toml` registry is byte-identical AND no `[[progress]]`
    // row was appended to the reconciled sheet (unlike `set_phase_status`, which would
    // append a progress row and evict the boundary on this Completed→InProgress reopen).
    #[test]
    fn reconcile_writer_leaves_registry_bytes_and_progress_log_untouched() {
        let tmp = tempfile::tempdir().unwrap();
        let repo = init_repo(&tmp.path().join("repo"));
        seed_phase_sheet(&repo, 147, "phase-01");

        // Drive a real completion via `set_phase_status`: this records a boundary row
        // AND appends two `[[progress]]` rows (in_progress, completed).
        set_phase_status(&repo, 147, "PHASE-01", PhaseStatus::InProgress, None, "T1").unwrap();
        set_phase_status(&repo, 147, "PHASE-01", PhaseStatus::Completed, None, "T2").unwrap();

        let boundaries = boundaries_path(&repo, 147).unwrap();
        let registry_before = fs::read(&boundaries).unwrap();
        let sheet = phases_dir(&repo, 147).join("phase-01.toml");
        let progress_before = fs::read_to_string(&sheet)
            .unwrap()
            .matches("[[progress]]")
            .count();

        // Reconcile to a DIFFERENT status (Completed→InProgress): a genuine write.
        let wrote =
            reconcile_phase_status(&repo, 147, "PHASE-01", PhaseStatus::InProgress, "T3").unwrap();
        assert!(wrote, "a status change is a real write");

        // The status flipped on the sheet...
        assert_eq!(
            read_phase_status(&phases_dir(&repo, 147), "phase-01")
                .unwrap()
                .as_deref(),
            Some("in_progress"),
        );
        // ...but the registry bytes are UNTOUCHED (no eviction — reconcile never
        // mutates the source of truth it reads).
        assert_eq!(
            fs::read(&boundaries).unwrap(),
            registry_before,
            "boundaries.toml is byte-identical after a reconcile"
        );
        // ...and NO `[[progress]]` row was appended.
        assert_eq!(
            fs::read_to_string(&sheet)
                .unwrap()
                .matches("[[progress]]")
                .count(),
            progress_before,
            "no progress row appended by the reconcile writer"
        );
    }

    // VT-2 (idempotence): a reconcile to the sheet's CURRENT status is a no-op — the
    // sheet is byte-identical (no `last_updated` churn) and the writer reports it did
    // not write.
    #[test]
    fn reconcile_writer_is_a_byte_identical_noop_when_status_already_matches() {
        let tmp = tempfile::tempdir().unwrap();
        let repo = init_repo(&tmp.path().join("repo"));
        seed_phase_sheet(&repo, 147, "phase-01");
        set_phase_status(&repo, 147, "PHASE-01", PhaseStatus::InProgress, None, "T1").unwrap();

        let sheet = phases_dir(&repo, 147).join("phase-01.toml");
        let before = fs::read(&sheet).unwrap();

        let wrote =
            reconcile_phase_status(&repo, 147, "PHASE-01", PhaseStatus::InProgress, "T-LATER")
                .unwrap();
        assert!(!wrote, "already at target — no write");
        assert_eq!(fs::read(&sheet).unwrap(), before, "sheet is byte-identical");
    }

    // EX-4: the PhaseTruth → reconcile-action mapping is explicit and total.
    #[test]
    fn reconcile_action_maps_every_truth_variant() {
        use ReconcileAction as A;
        assert_eq!(
            reconcile_action(&PhaseTruth::Landed),
            A::Write(PhaseStatus::Completed)
        );
        assert_eq!(
            reconcile_action(&PhaseTruth::InFlight("in_progress".into())),
            A::Write(PhaseStatus::InProgress)
        );
        assert_eq!(
            reconcile_action(&PhaseTruth::Planned),
            A::Write(PhaseStatus::Planned)
        );
        assert_eq!(
            reconcile_action(&PhaseTruth::Conflict(ConflictKind::Rework)),
            A::Skip
        );
        assert_eq!(reconcile_action(&PhaseTruth::Unknown), A::Skip);
        assert_eq!(reconcile_action(&PhaseTruth::Anomaly), A::Skip);
        assert_eq!(
            reconcile_action(&PhaseTruth::Local("completed".into())),
            A::Leave
        );
    }

    // VT-1: a git-unavailable transition (non-repo cwd) DEGRADES — no row, no
    // panic, and the status flip still COMPLETES.
    #[test]
    fn binding_degrades_without_blocking_when_git_unavailable() {
        let dir = tempfile::tempdir().unwrap();
        let root = dir.path(); // not a git repo
        init_one(root); // seeds slice 4 / PHASE-01 sheet via init_phases

        // Transition succeeds despite no resolvable HEAD.
        set_phase_status(root, 4, "PHASE-01", PhaseStatus::InProgress, None, "T1").unwrap();
        set_phase_status(root, 4, "PHASE-01", PhaseStatus::Completed, None, "T2").unwrap();

        let doc = fs::read_to_string(phases_dir(root, 4).join("phase-01.toml"))
            .unwrap()
            .parse::<toml_edit::DocumentMut>()
            .unwrap();
        assert_eq!(
            doc["status"].as_str(),
            Some("completed"),
            "flip still landed"
        );
        // No registry written (boundaries_path itself errors in a non-repo, so the
        // read returns a named error — the point is the transition above succeeded).
        assert!(read_source_deltas(root, 4).is_err());
    }

    // VT-1: arm mutual-exclusion — a LIVE coordination worktree for `dispatch/<NNN>`
    // makes the binding stand down, EVEN when the flip runs from the session root (the
    // primary tree on `main`, never checked out to `dispatch/NNN`). The guard keys on
    // worktree liveness (D3/D9), not the current branch — the branch-proxy was unsound
    // under flip-from-session-root (design §2).
    #[test]
    fn binding_stands_down_under_a_live_coord_worktree() {
        let tmp = tempfile::tempdir().unwrap();
        let repo = init_repo(&tmp.path().join("repo"));
        seed_phase_sheet(&repo, 147, "phase-01");
        // A live coordination worktree on dispatch/147 — the dispatch funnel owns
        // recording. The primary repo stays on `main` (the session-root flip the
        // branch-proxy could not see).
        let coord = tmp.path().join("coord");
        git(
            &repo,
            &[
                "worktree",
                "add",
                "-b",
                "dispatch/147",
                &coord.to_string_lossy(),
            ],
        );

        set_phase_status(&repo, 147, "PHASE-01", PhaseStatus::InProgress, None, "T1").unwrap();
        git(&repo, &["commit", "-q", "--allow-empty", "-m", "code"]);
        set_phase_status(&repo, 147, "PHASE-01", PhaseStatus::Completed, None, "T2").unwrap();

        assert!(
            read_source_deltas(&repo, 147).unwrap().is_empty(),
            "live coord worktree: the binding records nothing (the funnel recorder owns it)"
        );
    }

    // VT-2: liveness, not name-match — a PRUNABLE / deleted-path `dispatch/<NNN>` coord
    // entry reads as ABSENT, so the solo binding records (a stale coord worktree must not
    // suppress capture forever). git keeps listing a worktree whose checkout was deleted,
    // marking it `prunable`, until `git worktree prune` runs.
    #[test]
    fn binding_records_when_coord_worktree_is_prunable() {
        let tmp = tempfile::tempdir().unwrap();
        let repo = init_repo(&tmp.path().join("repo"));
        seed_phase_sheet(&repo, 147, "phase-01");
        let coord = tmp.path().join("coord");
        git(
            &repo,
            &[
                "worktree",
                "add",
                "-b",
                "dispatch/147",
                &coord.to_string_lossy(),
            ],
        );
        // Delete the coord checkout on disk: git still lists dispatch/147, now prunable.
        std::fs::remove_dir_all(&coord).unwrap();

        let start = git(&repo, &["rev-parse", "HEAD"]);
        set_phase_status(&repo, 147, "PHASE-01", PhaseStatus::InProgress, None, "T1").unwrap();
        git(&repo, &["commit", "-q", "--allow-empty", "-m", "code"]);
        let end = git(&repo, &["rev-parse", "HEAD"]);
        set_phase_status(&repo, 147, "PHASE-01", PhaseStatus::Completed, None, "T2").unwrap();

        assert_eq!(
            read_source_deltas(&repo, 147).unwrap(),
            vec![BoundaryRow {
                provenance: Provenance::Solo,
                ..row("PHASE-01", &start, &end)
            }],
            "a prunable coord entry is not live → the solo binding records"
        );
    }

    // VT-2: a solo-context completion (NOT on `dispatch/<NNN>`) records exactly one
    // — the mutual-exclusion's positive arm. A solo `/worktree` fork is on its own
    // feature branch, never the coordination branch, so it still captures.
    #[test]
    fn binding_captures_on_a_solo_feature_branch() {
        let tmp = tempfile::tempdir().unwrap();
        let repo = init_repo(&tmp.path().join("repo"));
        seed_phase_sheet(&repo, 147, "phase-01");
        // A solo fork's own branch — NOT dispatch/147.
        git(&repo, &["checkout", "-q", "-b", "feat/solo-work"]);
        let start = git(&repo, &["rev-parse", "HEAD"]);

        set_phase_status(&repo, 147, "PHASE-01", PhaseStatus::InProgress, None, "T1").unwrap();
        git(&repo, &["commit", "-q", "--allow-empty", "-m", "code"]);
        let end = git(&repo, &["rev-parse", "HEAD"]);
        set_phase_status(&repo, 147, "PHASE-01", PhaseStatus::Completed, None, "T2").unwrap();

        assert_eq!(
            read_source_deltas(&repo, 147).unwrap(),
            vec![BoundaryRow {
                provenance: Provenance::Solo,
                ..row("PHASE-01", &start, &end)
            }],
            "solo context: exactly one boundary"
        );
    }

    // VT-5 (irreducible floor, design §5.5/§9): a completed PURE-SOLO phase with NO
    // stamped start (never flipped in_progress under the binding) and no coord worktree
    // records NOTHING (+ a surfaced warning) — never a manufactured garbage row. The
    // UNTOUCHED conformance consumer (`registry_completeness`) then reports Incomplete
    // naming the phase, so the accepted floor never silently passes (record-delta remedy).
    #[test]
    fn binding_absent_start_records_nothing_and_completeness_flags_incomplete() {
        let tmp = tempfile::tempdir().unwrap();
        let repo = init_repo(&tmp.path().join("repo"));
        seed_phase_sheet(&repo, 147, "phase-01");

        // Straight to Completed — no in_progress flip, so no `code_start_oid` was ever
        // stamped: the absent-stamp branch records nothing.
        set_phase_status(&repo, 147, "PHASE-01", PhaseStatus::Completed, None, "T1").unwrap();

        assert!(
            read_source_deltas(&repo, 147).unwrap().is_empty(),
            "no stamped start → no boundary recorded (no garbage row)"
        );
        assert_eq!(
            registry_completeness(&repo, &repo, 147).unwrap(),
            Completeness::Incomplete {
                gaps: vec![CompletenessGap::Missing {
                    phase: "PHASE-01".to_string()
                }]
            },
            "the floor surfaces as Incomplete end-to-end, never a silent pass"
        );
    }

    // --- completeness check (SL-147 PHASE-03, design F-2) -------------------

    fn completed_set(ids: &[&str]) -> BTreeSet<String> {
        ids.iter().map(|s| (*s).to_string()).collect()
    }

    // VT-2: one row per completed phase, no extras → Complete.
    #[test]
    fn completeness_is_complete_when_rows_cover_completed_phases() {
        let completed = completed_set(&["PHASE-01", "PHASE-02"]);
        let recorded = vec!["PHASE-01".to_string(), "PHASE-02".to_string()];
        assert_eq!(
            check_completeness(&completed, &recorded),
            Completeness::Complete
        );
    }

    // VT-2: a completed phase with no recorded row → Incomplete, naming it.
    #[test]
    fn completeness_flags_a_missing_row_for_a_completed_phase() {
        let completed = completed_set(&["PHASE-01", "PHASE-02"]);
        let recorded = vec!["PHASE-01".to_string()];
        let Completeness::Incomplete { gaps } = check_completeness(&completed, &recorded) else {
            panic!("expected incomplete");
        };
        assert_eq!(
            gaps,
            vec![CompletenessGap::Missing {
                phase: "PHASE-02".to_string()
            }]
        );
        assert!(gaps[0].describe().contains("PHASE-02"));
    }

    // VT-2: a recorded row whose phase is not completed → Incomplete (ExtraRow).
    #[test]
    fn completeness_flags_an_extra_row() {
        let completed = completed_set(&["PHASE-01"]);
        let recorded = vec!["PHASE-01".to_string(), "PHASE-09".to_string()];
        let Completeness::Incomplete { gaps } = check_completeness(&completed, &recorded) else {
            panic!("expected incomplete");
        };
        assert_eq!(
            gaps,
            vec![CompletenessGap::Extra {
                phase: "PHASE-09".to_string()
            }]
        );
    }

    // VT-2: more than one row for the same completed phase → DuplicateRow.
    #[test]
    fn completeness_flags_a_duplicate_row() {
        let completed = completed_set(&["PHASE-01"]);
        let recorded = vec!["PHASE-01".to_string(), "PHASE-01".to_string()];
        assert_eq!(
            check_completeness(&completed, &recorded),
            Completeness::Incomplete {
                gaps: vec![CompletenessGap::Duplicate {
                    phase: "PHASE-01".to_string()
                }]
            }
        );
    }

    // VT-2: `completed_phase_ids` reads only `completed` phases from the sheets.
    #[test]
    fn completed_phase_ids_returns_only_completed_phases() {
        let dir = tempfile::tempdir().unwrap();
        let root = dir.path();
        let phases = phases_dir(root, 147);
        write_phase_toml(&phases, "phase-01", "completed");
        write_phase_toml(&phases, "phase-02", "in_progress");
        write_phase_toml(&phases, "phase-03", "completed");

        let completed = completed_phase_ids(root, 147).unwrap();
        assert_eq!(completed, completed_set(&["PHASE-01", "PHASE-03"]));
    }

    // VT-2 (integration): registry_completeness composes the registry read +
    // phase-sheet read — a completed phase missing its row fails closed.
    #[test]
    fn registry_completeness_fails_closed_on_unrecorded_completed_phase() {
        let tmp = tempfile::tempdir().unwrap();
        let repo = init_repo(&tmp.path().join("repo"));
        let head = git(&repo, &["rev-parse", "HEAD"]);

        let phases = phases_dir(&repo, 147);
        write_phase_toml(&phases, "phase-01", "completed");
        write_phase_toml(&phases, "phase-02", "completed");
        record_source_delta(&repo, 147, row("PHASE-01", &head, &head)).unwrap();

        let verdict = registry_completeness(&repo, &repo, 147).unwrap();
        assert_eq!(
            verdict,
            Completeness::Incomplete {
                gaps: vec![CompletenessGap::Missing {
                    phase: "PHASE-02".to_string()
                }]
            }
        );
    }
}