dnoise 0.3.0

Denoise Bruker timsTOF .d folders with an iterative vertical ion-mobility feature filter (CLI + library).
Documentation 
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{
  "schema_version": 1,
  "retrieved_on": "2026-09-09",
  "examples": [
    {
      "method": "synchro-PASEF",
      "project": "PXD037766",
      "source_url": "https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/03/PXD037766/20220923_TIMS03_PaSk_SA_4prot_200fmol_Evo05_3min_IM0713_classical_SyS_4MS_wCE_S4-G3_1_32594.d.zip",
      "directory": "acquisitions/20220923_TIMS03_PaSk_SA_4prot_200fmol_Evo05_3min_IM0713_classical_SyS_4MS_wCE_S4-G3_1_32594.d",
      "archive_member_prefix": null,
      "extraction": "complete ZIP",
      "files": {
        "analysis.tdf": {
          "bytes": 6139904,
          "sha256": "06d0ec5eb1d9520a2aaf8368334a454ae002ef24040aee01f14f9977f907b269"
        },
        "analysis.tdf_bin": {
          "bytes": 45834240,
          "sha256": "9fa713602070942c57166f86ba80d1696c30cd7cbfc2e62b32aa13ca350970d1"
        }
      },
      "compression_type": 2,
      "frames_by_msms_type": {
        "0": 341,
        "9": 1363
      },
      "archive_sha256": "85686b38dd7da8c549ed0ec78bb6a01970d4eec9e01718fd8984c9f0284665fa"
    },
    {
      "method": "midia-PASEF",
      "project": "PXD073779",
      "source_url": "https://ftp.pride.ebi.ac.uk/pride/data/archive/2026/07/PXD073779/midia.rar",
      "directory": "acquisitions/NSCtrl_3_midiaPASEF_25x10_OL5_5min_PepSep_4cm_Slot2-33_3_4418.d",
      "archive_member_prefix": "NSCtrl_3_midiaPASEF_25x10_OL5_5min_PepSep_4cm_Slot2-33_3_4418.d/",
      "extraction": "first complete .d directory, streamed archive prefix",
      "files": {
        "analysis.tdf": {
          "bytes": 23961600,
          "sha256": "3641bdd56a2dcc7921cdb25b2afae057fe7773b8db83a2557810ce3c638e5531"
        },
        "analysis.tdf_bin": {
          "bytes": 317374464,
          "sha256": "cfd548d114d6ab4e23287be9d3b8fde6bbc4a3a6cc0015d821fbdd276c90b5e7"
        }
      },
      "compression_type": 2,
      "frames_by_msms_type": {
        "0": 405,
        "9": 4047
      },
      "archive_prefix_bytes_consumed": 320864256
    },
    {
      "method": "Slice-PASEF",
      "project": "PXD073779",
      "source_url": "https://ftp.pride.ebi.ac.uk/pride/data/archive/2026/07/PXD073779/Slice.tar.gz",
      "directory": "acquisitions/Dil_1_1_1FSLICE_DIA_5min_PepSep_4cm_Slot2-19_1_4249.d",
      "archive_member_prefix": "Dil_1_1_1FSLICE_DIA_5min_PepSep_4cm_Slot2-19_1_4249.d/",
      "extraction": "first complete .d directory, streamed archive prefix",
      "files": {
        "analysis.tdf": {
          "bytes": 21868544,
          "sha256": "f91419bfefaa2a81da9f3a0ac2851209ef188c48438972512d6e9c0949897129"
        },
        "analysis.tdf_bin": {
          "bytes": 1536905216,
          "sha256": "f5e17b6570a525cf9812c44f69abe8189aaab9651930920a033cd5ed61999fa9"
        }
      },
      "compression_type": 2,
      "frames_by_msms_type": {
        "0": 743,
        "9": 3712
      },
      "archive_prefix_bytes_consumed": 2443182080
    }
  ]
}