Crate dihardts_omicstools

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§Omictools

§Constant data

For easier maintenance the data of some datatypes with multiple attributes like elements and amino acids is provided as CSV-file and gets compiled on build time (see: build.rs)

Data with one or two attributes are directly added to the code:

  • Amino acid hydropathicity_kd:

    Kyte, J.; Doolittle, R. F.. A simple method for displaying the hydropathic character of a protein. Journal of molecular biology 1982, 157 (1), 105-32. https://doi.org/10.1016/0022-2836(82)90515-0.

§Installation

cargo add dihardts_omicstools

§Development

§Dependencies

  • Rust
  • OpenSSL (Ubuntu: libssl-dev)

§Unit tests

  • For testing the taxonomy reader a taxdmp.zip is required. The test is capable of download it by itself and save it to the tmp folder, however if you plan excessive testing over a couple of reboots, download it ones and set the environment variable TAXDMP_ZIP_PATH with the path to the file.

Modules§

  • Module containing functions and information for biology
  • Module containing functions and information for chemistry and molecules
  • Entities and functions for working with mass spectrometry data
  • Module containing functions and definitions for proteomics
  • Functions and extension for external crates