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Sam

Struct Sam 

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pub struct Sam { /* private fields */ }
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Suffix automaton with CSR (sorted-per-state) transitions — built once, queried by scans.

For the range-restricted recursion (fix b), each state also carries its endpos as a contiguous slice [dfs_in, dfs_in+dfs_cnt) of epos (the end-positions in b, laid out by a DFS of the suffix-link tree so a subtree is contiguous). A merge-sort tree over epos answers “is there an end-position in [lo,hi] within this state’s subtree, and the min/max such” — so the whole RO recursion runs on this one prebuilt SAM, with no sub-builds.

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impl Sam

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pub fn nodes(&self) -> &[[u32; 4]]

Read-only view of the packed [len, link, edge_lo, edge_hi] per state — needed by the GPU port (gpu::matching_stats_gpu) to serialize the SAM into a Metal buffer. The kernel reads this slice via index calculations, so we expose it raw (one [u32; 4] per state).

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pub fn edges_packed(&self) -> &[u64]

Read-only view of the packed edge slice: (char << 32) | target_state, sorted by char within each state’s [edge_lo, edge_hi) range. The GPU kernel does binary search over this slice exactly as csr_lookup does on the CPU.

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pub fn root_next_table(&self) -> &[i32]

Read-only view of the root’s direct ASCII transition table (root_next[c] = state, or -1 for missing). 128 entries per SAM. The GPU kernel uses this to skip the binary search at the root state, exactly as the CPU does.

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impl Clone for Sam

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fn clone(&self) -> Sam

Returns a duplicate of the value. Read more
1.0.0 (const: unstable) · Source§

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more

Auto Trait Implementations§

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impl Freeze for Sam

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impl RefUnwindSafe for Sam

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impl Send for Sam

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impl Sync for Sam

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impl Unpin for Sam

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impl UnsafeUnpin for Sam

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impl UnwindSafe for Sam

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impl<T> Any for T
where T: 'static + ?Sized,

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fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more
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impl<T> Borrow<T> for T
where T: ?Sized,

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fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more
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impl<T> BorrowMut<T> for T
where T: ?Sized,

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fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more
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impl<T> CloneToUninit for T
where T: Clone,

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unsafe fn clone_to_uninit(&self, dest: *mut u8)

🔬This is a nightly-only experimental API. (clone_to_uninit)
Performs copy-assignment from self to dest. Read more
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impl<T> From<T> for T

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fn from(t: T) -> T

Returns the argument unchanged.

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impl<T, U> Into<U> for T
where U: From<T>,

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fn into(self) -> U

Calls U::from(self).

That is, this conversion is whatever the implementation of From<T> for U chooses to do.

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impl<T> IntoEither for T

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fn into_either(self, into_left: bool) -> Either<Self, Self>

Converts self into a Left variant of Either<Self, Self> if into_left is true. Converts self into a Right variant of Either<Self, Self> otherwise. Read more
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fn into_either_with<F>(self, into_left: F) -> Either<Self, Self>
where F: FnOnce(&Self) -> bool,

Converts self into a Left variant of Either<Self, Self> if into_left(&self) returns true. Converts self into a Right variant of Either<Self, Self> otherwise. Read more
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impl<T> Pointable for T

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const ALIGN: usize

The alignment of pointer.
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type Init = T

The type for initializers.
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unsafe fn init(init: <T as Pointable>::Init) -> usize

Initializes a with the given initializer. Read more
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unsafe fn deref<'a>(ptr: usize) -> &'a T

Dereferences the given pointer. Read more
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unsafe fn deref_mut<'a>(ptr: usize) -> &'a mut T

Mutably dereferences the given pointer. Read more
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unsafe fn drop(ptr: usize)

Drops the object pointed to by the given pointer. Read more
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impl<T> ToOwned for T
where T: Clone,

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type Owned = T

The resulting type after obtaining ownership.
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fn to_owned(&self) -> T

Creates owned data from borrowed data, usually by cloning. Read more
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fn clone_into(&self, target: &mut T)

Uses borrowed data to replace owned data, usually by cloning. Read more
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impl<T, U> TryFrom<U> for T
where U: Into<T>,

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type Error = Infallible

The type returned in the event of a conversion error.
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fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>

Performs the conversion.
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impl<T, U> TryInto<U> for T
where U: TryFrom<T>,

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type Error = <U as TryFrom<T>>::Error

The type returned in the event of a conversion error.
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fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

Performs the conversion.