dendritic-ndarray 1.5.0

NDArray Package for dendritic
Documentation
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
use dendritic_ndarray;

#[cfg(test)]
mod ndarray_tests {

    use crate::dendritic_ndarray::ndarray::NDArray;
    use dendritic_ndarray::ops::*;

    #[test]
    fn test_create_ndarray() {

        let x: NDArray<f64> = NDArray::new(vec![3, 4]).unwrap();
        let shape = x.shape();
        let rank = x.rank();
        let expected_shape : Vec<usize> = vec![3, 4];

        /* asserts */ 
        assert_eq!(rank, 2); 
        assert_eq!(shape.values(), expected_shape);
    }

    #[test]
    fn test_create_ndarray_values() {

        let n: NDArray<f64> = NDArray::array(vec![2, 2], vec![0.0,0.0,1.0,1.0]).unwrap();
        let shape = n.shape();
        let rank = n.rank();
        let values = n.values();
        let expected_shape : Vec<usize> = vec![2, 2];
        let expected_size = 4; 
        let expected_vals = vec![0.0,0.0,1.0,1.0];

        /* asserts */ 
        assert_eq!(shape.values(), expected_shape);
        assert_eq!(rank, 2);
        assert_eq!(values, &expected_vals);
        assert_eq!(expected_size, values.len()); 

        /* value mismatch */ 
        let x1: Result<NDArray<f64>, String> = NDArray::array(vec![3, 4], vec![0.0,0.0,0.0,0.0,1.0,2.0]);
        let expected_error = "Values don't match size based on dimensions"; 
        assert_eq!(x1, Err(expected_error.to_string()));  
    }

    #[test]
    fn test_reshape() {

        /* valid reshape */ 
        let mut n: NDArray<f64> = NDArray::array(vec![2, 3], vec![0.0,0.0,1.0,1.0,2.0,2.0]).unwrap();
        let _ = n.reshape(vec![3, 2]); 
        assert_eq!(n.shape().values(), vec![3, 2]);

        /* rank mismatch */
        let mut x: NDArray<f64> = NDArray::array(vec![2, 4], vec![0.0,0.0,1.0,1.0,2.0,2.0,3.0,3.0]).unwrap();
        let bad_reshape = x.reshape(vec![2, 2, 2]);
        let rank_error = "New Shape values don't match rank of array"; 
        assert_eq!(bad_reshape, Err(rank_error.to_string()));

        /* size mismatch */ 
        let bad_size = x.reshape(vec![2, 3]); 
        let size_error = "New Shape values don't match size of array";
        assert_eq!(bad_size, Err(size_error.to_string()));  
    }

    #[test]
    fn test_index() {

        /* 2d indexing */ 
        let mut index = 0;
        let n: NDArray<f64> = NDArray::array(vec![2, 3], vec![0.0,0.0,1.0,1.0,2.0,2.0]).unwrap();
        for i in 0..2 {
            for  j in 0..3 {
                assert_eq!(n.index(vec![i, j]).unwrap(), index);
                index += 1; 
            }
        }

        /* 3d indexing */
        index = 0; 
        let m: NDArray<i32> = NDArray::array(vec![2, 2, 2], vec![0,0,1,1,2,2,3,3]).unwrap();
         for i in 0..2 {
            for  j in 0..2 {
                for k in 0..2 {
                    assert_eq!(m.index(vec![i, j, k]).unwrap(), index);
                    index += 1; 
                }
            }
        }

        /* expected indexing error */
        let o: NDArray<i32> = NDArray::array(vec![2, 3], vec![0,0,1,1,2,2]).unwrap();
        let index_bound = o.index(vec![3, 3]);
        let index_error = "Index out of bounds";
        assert_eq!(index_bound, Err(index_error.to_string()));

        /* expected rank error */ 
        let rank_bound = o.index(vec![0, 0, 1]);
        let rank_error = "Indexing doesn't match rank of ndarray"; 
        assert_eq!(rank_bound, Err(rank_error.to_string()));

    }

    #[test]
    fn test_get_indices() {

        /* 2d indexing */ 
        let mut index = 0;
        let n: NDArray<i32> = NDArray::array(vec![2, 3], vec![0,0,1,1,2,2]).unwrap();
        for i in 0..2 {
            for  j in 0..3 {
                assert_eq!(n.indices(index).unwrap(), vec![i, j]);
                index += 1; 
            }
        }

        index = 0; 
        let m: NDArray<i32> = NDArray::array(vec![2, 2, 2], vec![0,0,1,1,2,2,3,3]).unwrap();
        for i in 0..2 {
            for j in 0..2 {
                for k in 0..2 {
                    assert_eq!(m.indices(index).unwrap(), vec![i, j, k]);
                    index += 1; 
                }

            }
        }

        let o: NDArray<i32> = NDArray::array(vec![2, 3], vec![0,0,1,1,2,2]).unwrap();
        let size_bound = o.indices(8);
        let size_error = "Index out of bounds";
        assert_eq!(size_bound, Err(size_error.to_string()));
    }

    #[test]
    fn test_set_ndarray() {

        /* set 2d array */
        let mut index = 0; 
        let mut n: NDArray<i32> = NDArray::array(vec![2, 3], vec![0,0,1,1,2,2]).unwrap();
        for i in 0..2 {
            for  j in 0..3 {
                let _ = n.set(vec![i, j], index);
                index += 1; 
            }
        }

        let n_values = n.values();
        let expected_n : Vec<i32> = vec![0,1,2,3,4,5];
        assert_eq!(n_values, &expected_n);

        /* set 3d array */
        let mut index = 0; 
        let mut n: NDArray<i32> = NDArray::array(vec![2, 2, 2], vec![0,0,1,1,2,2,3,3]).unwrap();
        for i in 0..2 {
            for j in 0..2  {
                for k in 0..2 {
                    let _ = n.set(vec![i, j, k], index);
                    index += 1; 
                }
            }
        }
    }


    #[test]
    fn test_rows_cols_ndarray() {

        /* set 2d array */
        let x: NDArray<f64> = NDArray::array(vec![4, 2], vec![0.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0]).unwrap();
        let y: NDArray<f64> = NDArray::array(vec![2, 3], vec![1.0,1.0,1.0,2.0,2.0,2.0]).unwrap();

        /* get rows of x */ 
        let y_row_0: Vec<f64> = y.rows(0).unwrap(); 
        let y_row_1: Vec<f64> = y.rows(1).unwrap();
        let y_col_0: Vec<f64> = y.cols(0).unwrap(); 
        let y_col_1: Vec<f64> = y.cols(1).unwrap();

        let x_row_0: Vec<f64> = x.rows(0).unwrap(); 
        let x_row_1: Vec<f64> = x.rows(1).unwrap();
        let x_col_0: Vec<f64> = x.cols(0).unwrap(); 
        let x_col_1: Vec<f64> = x.cols(1).unwrap();

        /* validate */ 
        assert_eq!(y_row_0, vec![1.0,1.0,1.0]);
        assert_eq!(y_row_1, vec![2.0,2.0,2.0]); 
        assert_eq!(y_col_0, vec![1.0,2.0]);
        assert_eq!(y_col_1, vec![1.0,2.0]);

        assert_eq!(x_col_0, vec![0.0,0.0,1.0,0.0]);
        assert_eq!(x_col_1, vec![0.0,1.0,1.0,0.0]);
        assert_eq!(x_row_0, vec![0.0,0.0]);
        assert_eq!(x_row_1, vec![0.0,1.0]);

    }

    #[test]
    fn test_batch_ndarray() {

        let x: NDArray<f64> = NDArray::array(
            vec![10, 3], 
            vec![
                1.0, 2.0, 3.0,
                2.0, 3.0, 4.0, 
                3.0, 4.0, 5.0,
                4.0, 5.0, 6.0, 
                5.0, 6.0, 7.0,
                6.0, 7.0, 8.0,
                7.0, 8.0, 9.0, 
                8.0, 9.0, 10.0,
                9.0, 10.0, 11.0, 
                10.0, 11.0, 12.0
            ]
        ).unwrap();

        let batch_size: usize = 2;
        let x_batch = x.batch(batch_size).unwrap();

        let expected_batches: Vec<Vec<f64>> = vec![
            vec![1.0, 2.0, 3.0, 2.0, 3.0, 4.0],
            vec![2.0, 3.0, 4.0, 3.0, 4.0, 5.0],
            vec![3.0, 4.0, 5.0, 4.0, 5.0, 6.0],
            vec![4.0, 5.0, 6.0, 5.0, 6.0, 7.0],
            vec![5.0, 6.0, 7.0, 6.0, 7.0, 8.0],
            vec![6.0, 7.0, 8.0, 7.0, 8.0, 9.0],
            vec![7.0, 8.0, 9.0, 8.0, 9.0, 10.0],
            vec![8.0, 9.0, 10.0, 9.0, 10.0, 11.0],
            vec![9.0, 10.0, 11.0, 10.0, 11.0, 12.0]
        ];

        let mut index = 0; 
        for item in x_batch {
            assert_eq!(item.values(), &expected_batches[index]);
            index += 1; 
        }

    }


    #[test]
    fn test_axis() {

        let x = NDArray::array(vec![4, 3], vec![
            1.0,2.0,3.0,
            2.0,3.0,4.0,
            3.0,4.0,5.0,
            4.0,5.0,6.0
        ]).unwrap();

        let expected_x_cols = vec![
            vec![1.0, 2.0, 3.0, 4.0],
            vec![2.0, 3.0, 4.0, 5.0],
            vec![3.0, 4.0, 5.0, 6.0]
        ];

        let expected_x_rows = vec![
            vec![1.0, 2.0, 3.0],
            vec![2.0, 3.0, 4.0],
            vec![3.0, 4.0, 5.0],
            vec![4.0, 5.0, 6.0]
        ];


        for row in 0..x.shape().dim(0) {
            let item = x.axis(0, row).unwrap();
            assert_eq!(item.values(), &expected_x_rows[row]);
        }

        for col in 0..x.shape().dim(1) {
            let item = x.axis(1, col).unwrap();
            assert_eq!(item.values(), &expected_x_cols[col]);
        }  

        let x_4d = NDArray::load("data/ndarray/4d_array").unwrap();
        let x_4d_row = x_4d.axis(0, 0).unwrap();
        let x_4d_row_expected = vec![
            0.0, 1.0, 2.0, 3.0, 4.0, 5.0, 6.0, 7.0
        ];
        assert_eq!(x_4d_row.values(), &x_4d_row_expected);


        let x_4d_col_expected = vec![
            0.0, 1.0, 2.0, 3.0, 8.0, 9.0, 10.0, 11.0, 16.0,
            17.0, 18.0, 19.0, 24.0, 25.0, 26.0, 27.0
        ];
        let x_4d_col = x_4d.axis(1, 0).unwrap();
        assert_eq!(x_4d_col.values(), &x_4d_col_expected); 

        let x_4d_3_expected = vec![
            0.0, 1.0, 4.0, 5.0, 8.0, 9.0, 12.0, 13.0,
            16.0, 17.0, 20.0, 21.0, 24.0, 25.0, 28.0, 29.0
        ];
        let x_4d_3 = x_4d.axis(2, 0).unwrap();
        assert_eq!(x_4d_3.values(), &x_4d_3_expected); 

        let x_4d_4_expected = vec![
            0.0, 2.0, 4.0, 6.0, 8.0, 10.0, 12.0, 14.0,
            16.0, 18.0, 20.0, 22.0, 24.0, 26.0, 28.0, 30.0
        ];
        let x_4d_4 = x_4d.axis(3, 0).unwrap();
        assert_eq!(x_4d_4.values(), &x_4d_4_expected);  

        let x_5d = NDArray::load("data/ndarray/5d_array").unwrap();
        let x_5d_col = x_5d.axis(1, 0).unwrap();
        let expected_x_5d_col: Vec<f64> = vec![
            0.0, 1.0, 2.0, 3.0, 4.0, 5.0, 
            6.0, 7.0, 8.0, 9.0, 10.0, 11.0,
            12.0, 13.0, 14.0, 15.0, 16.0, 17.0, 
            18.0, 19.0, 20.0, 21.0, 22.0,23.0,
            72.0, 73.0, 74.0, 75.0, 76.0, 77.0, 78.0, 79.0, 
            80.0, 81.0, 82.0, 83.0,84.0, 85.0, 86.0, 87.0, 
            88.0, 89.0, 90.0, 91.0, 92.0, 93.0, 94.0, 95.0
        ];

        assert_eq!(x_5d_col.shape().values(), vec![2, 2, 4, 3]);
        assert_eq!(x_5d_col.values(), &expected_x_5d_col);

    }


    #[test]
    fn test_value_indices() {

        let x: NDArray<f64> = NDArray::array(
            vec![6, 1],
            vec![1.0, 2.0, 3.0, 1.0, 2.0, 3.0]
        ).unwrap();

        let idxs = x.value_indices(1.0);
        assert_eq!(idxs, vec![0, 3]);

        let idxs_two = x.value_indices(2.0);
        assert_eq!(idxs_two, vec![1, 4]);

        let idxs_three = x.value_indices(3.0);
        assert_eq!(idxs_three, vec![2, 5]);
        
        let y: NDArray<f64> = NDArray::array(
            vec![6, 1],
            vec![1.0, 1.0, 2.0, 3.0, 4.0, 1.0]
        ).unwrap();

        let y_idxs = y.value_indices(1.0);
        assert_eq!(y_idxs, vec![0, 1, 5]);

        let null_vals = y.value_indices(20.0);
        let len_vec = null_vals.len();
        assert_eq!(len_vec, 0); 

    }

    #[test]
    fn test_indice_query() {

        let x: NDArray<f64> = NDArray::array(
            vec![1, 6],
            vec![1.0, 2.0, 3.0, 1.0, 2.0, 3.0]
        ).unwrap();

        let x_idxs = x.indice_query(vec![1,2,3]).unwrap();
        assert_eq!(*x_idxs.values(), vec![2.0, 3.0, 1.0]);

        let x_idxs_2 = x.indice_query(vec![0,1,2]).unwrap();
        assert_eq!(*x_idxs_2.values(), vec![1.0, 2.0, 3.0]);

        let x_idxs_3 = x.indice_query(vec![3,4,5]).unwrap();
        assert_eq!(*x_idxs_3.values(), vec![1.0, 2.0, 3.0]);

        let x_idxs_out_of_bounds = x.indice_query(vec![1,2,3,4,5,6,7,8,9]);
        assert_eq!(
            x_idxs_out_of_bounds.unwrap_err(),
            "Indices length is greater than array size"
        );

        let x_indice_out_of_bounds = x.indice_query(vec![10, 11, 12]);
        assert_eq!(
            x_indice_out_of_bounds.unwrap_err(),
            "Specified index greater than array size"
        );

    }


    #[test]
    fn test_split() {

        let x_path = "data/split_unit_testing/10_3"; 
        let x: NDArray<f64> = NDArray::load(x_path).unwrap();
        let (x_train, x_test) = x.split(0, 0.80).unwrap();

        assert_eq!(
            x_train.shape().values(),
            vec![8, 3]
        );

        assert_eq!(
            x_test.shape().values(),
            vec![2, 3]
        );

        assert_eq!(
            x.split(10, 0.80).unwrap_err(),
            "AXIS greater than current NDArray shape"
        ); 

        let y_path = "data/split_unit_testing/7_3"; 
        let y: NDArray<f64> = NDArray::load(y_path).unwrap();
        let (y_train, y_test) = y.split(0, 0.50).unwrap();

        assert_eq!(
            y_train.shape().values(),
            vec![4, 3]
        );

        assert_eq!(
            y_test.shape().values(),
            vec![3, 3]
        );
    }

    #[test]
    fn test_drop_axis() {

        let x: NDArray<f64> = NDArray::array(
            vec![3, 3],
            vec![
                1.0, 2.0, 3.0,
                2.0, 3.0, 4.0,
                3.0, 4.0, 5.0,
            ]
        ).unwrap();

        let y: NDArray<f64> = NDArray::array(
            vec![3, 5],
            vec![
                1.0, 2.0, 3.0, 7.0, 8.0,
                2.0, 3.0, 4.0, 7.0, 8.0,
                3.0, 4.0, 5.0, 7.0, 8.0
            ]
        ).unwrap();

        let z: NDArray<f64> = NDArray::array(
            vec![2, 2, 2],
            vec![1.0, 2.0, 3.0, 4.0, 5.0, 6.0, 7.0, 8.0]
        ).unwrap();

        let expected_rows = vec![
            vec![2.0, 3.0, 4.0],
            vec![3.0, 4.0, 5.0]
        ]; 

        let expected_y_cols = vec![
            vec![1.0, 2.0, 3.0],
            vec![2.0, 3.0, 4.0],
            vec![7.0, 7.0, 7.0],
            vec![8.0, 8.0, 8.0],
        ]; 

        let expected_y_rows = vec![
            vec![1.0, 2.0, 3.0, 7.0, 8.0],
            vec![3.0, 4.0, 5.0, 7.0, 8.0],
        ]; 

        let x_1 = x.drop_axis(0, 0).unwrap();
        let x_2 = x.drop_axis(1, 0).unwrap();
        let y_1 = y.drop_axis(0, 1).unwrap();
        let y_2 = y.drop_axis(1, 2).unwrap();

        let bad_idx = x.drop_axis(0, 10); 
        let bad_axis = x.drop_axis(2, 10);
        let bad_array = z.drop_axis(0, 0);

        assert_eq!(
            bad_idx.unwrap_err(),
            "Drop Axis: Selected indice too large for axis"
        );

        assert_eq!(
            bad_axis.unwrap_err(),
            "Drop Axis: Selected axis larger than rank"
        );

        assert_eq!(
            bad_array.unwrap_err(),
            "Drop Axis: Only supported for rank 2 values"
        );

        assert_eq!(
            x_1.shape().values(), 
            vec![2, 3]
        ); 

        assert_eq!(
            x_2.shape().values(), 
            vec![3, 2]
        );

        assert_eq!(
            y_1.shape().values(), 
            vec![2, 5]
        ); 

        assert_eq!(
            y_2.shape().values(), 
            vec![3, 4]
        ); 

        let x_rows = x_1.shape().dim(0);
        let y_rows = y_1.shape().dim(0);
        let y_cols = y_2.shape().dim(1);

        for row in 0..x_rows {

            let item = x_1.axis(0, row).unwrap();
            let item2 = x_2.axis(1, row).unwrap(); 

            assert_eq!(
                item.values(),
                &expected_rows[row]
            );

            assert_eq!(
                item2.values(),
                &expected_rows[row]
            ); 
        }

        for col in 0..y_cols {
            let item = y_2.axis(1, col).unwrap();
            assert_eq!(
                item.values(),
                &expected_y_cols[col]
            );
        }

        for row in 0..y_rows {
            let item = y_1.axis(0, row).unwrap();
            assert_eq!(
                item.values(),
                &expected_y_rows[row]
            );
        }

    }

}