deacon 0.4.0

Fast alignment-free sequence filter
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108

[[bin]]
name = "deacon"
path = "src/main.rs"

[dependencies.anyhow]
version = "1.0"

[dependencies.bincode]
features = ["serde"]
version = "2.0"

[dependencies.clap]
features = ["derive"]
version = "4.5"

[dependencies.flate2]
version = "1.1"

[dependencies.indicatif]
version = "0.17"

[dependencies.needletail]
version = "0.6"

[dependencies.packed-seq]
version = "2.0"

[dependencies.rayon]
version = "1"

[dependencies.rustc-hash]
version = "2.1.1"

[dependencies.serde]
features = ["derive"]
version = "1.0"

[dependencies.serde_json]
version = "1.0"

[dependencies.simd-minimizers]
version = "1.1"

[dependencies.thiserror]
version = "2.0"

[dependencies.xxhash-rust]
features = ["xxh3"]
version = "0.8"

[dependencies.zstd]
version = "0.13"

[dev-dependencies.assert_cmd]
version = "2.0"

[dev-dependencies.predicates]
version = "3.0"

[dev-dependencies.rstest]
version = "0.25"

[dev-dependencies.tempfile]
version = "3.20"

[lib]
name = "deacon"
path = "src/lib.rs"

[package]
authors = ["Bede Constantinides <b@bede.im>"]
autobenches = false
autobins = false
autoexamples = false
autolib = false
autotests = false
build = false
categories = ["science", "command-line-utilities"]
description = "Fast alignment-free sequence filter"
edition = "2024"
exclude = ["bench/*", "data/*"]
homepage = "https://github.com/bede/deacon"
keywords = ["bioinformatics", "genomics", "filtering", "decontamination"]
license = "MIT"
name = "deacon"
readme = "README.md"
repository = "https://github.com/bede/deacon"
version = "0.4.0"

[profile.release]
codegen-units = 1
debug = 0
lto = true
opt-level = 3
panic = "abort"
strip = false

[[test]]
name = "cli_tests"
path = "tests/cli_tests.rs"

[[test]]
name = "filter_tests"
path = "tests/filter_tests.rs"

[[test]]
name = "index_tests"
path = "tests/index_tests.rs"