deacon 0.3.0

Fast alignment-free sequence filter
Documentation 
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[[bin]]
name = "deacon"
path = "src/main.rs"

[dependencies.anyhow]
version = "1.0"

[dependencies.bincode]
features = ["serde"]
version = "2.0"

[dependencies.clap]
features = ["derive"]
version = "4.5"

[dependencies.flate2]
version = "1.1"

[dependencies.indicatif]
version = "0.17"

[dependencies.needletail]
version = "0.6"

[dependencies.packed-seq]
version = "1.0.2"

[dependencies.rayon]
version = "1"

[dependencies.rustc-hash]
version = "2.1.1"

[dependencies.serde]
features = ["derive"]
version = "1.0"

[dependencies.serde_json]
version = "1.0"

[dependencies.simd-minimizers]
version = "1.0.0"

[dependencies.thiserror]
version = "2.0"

[dependencies.xxhash-rust]
features = ["xxh3"]
version = "0.8"

[dependencies.zstd]
version = "0.13"

[dev-dependencies.assert_cmd]
version = "2.0"

[dev-dependencies.predicates]
version = "3.0"

[dev-dependencies.rstest]
version = "0.25"

[dev-dependencies.tempfile]
version = "3.8"

[lib]
name = "deacon"
path = "src/lib.rs"

[package]
authors = ["Bede Constantinides <b@bede.im>"]
autobenches = false
autobins = false
autoexamples = false
autolib = false
autotests = false
build = false
categories = ["science", "command-line-utilities"]
description = "Fast alignment-free sequence filter"
edition = "2024"
exclude = ["bench/*", "data/*"]
homepage = "https://github.com/bede/deacon"
keywords = ["bioinformatics", "genomics", "filtering", "decontamination"]
license = "MIT"
name = "deacon"
readme = "README.md"
repository = "https://github.com/bede/deacon"
version = "0.3.0"

[profile.release]
codegen-units = 1
debug = 0
lto = true
opt-level = 3
panic = "abort"
strip = false

[[test]]
name = "cli_tests"
path = "tests/cli_tests.rs"

[[test]]
name = "filter_tests"
path = "tests/filter_tests.rs"

[[test]]
name = "index_tests"
path = "tests/index_tests.rs"