cyto-cli 0.7.2

Ultra high-throughput processing of 10x-flex single-cell sequencing data
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82

# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "cyto-cli"
version = "0.7.2"
authors = ["Noam Teyssier <noam.teyssier@arcinstitute.org>"]
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Ultra high-throughput processing of 10x-flex single-cell sequencing data"
readme = "README.md"
keywords = [
    "flex",
    "binseq",
    "single-cell",
    "probe",
    "sequencing",
]
categories = [
    "command-line-utilities",
    "science::bioinformatics",
]
license = "BSD-3-Clause"
repository = "https://github.com/arcinstitute/cyto"
resolver = "3"

[lib]
name = "cyto_cli"
path = "src/lib.rs"

[dependencies.anyhow]
version = "1.0.102"

[dependencies.binseq]
version = "0.9.0"

[dependencies.clap]
version = "4.5.60"
features = ["derive"]

[dependencies.cyto-io]
version = "0.2.0"

[dependencies.ibu]
version = "0.2.1"

[dependencies.log]
version = "0.4.29"

[dependencies.num_cpus]
version = "1.17.0"

[dependencies.paraseq]
version = "0.4.8"

[lints.clippy]
cast_possible_truncation = "allow"
cast_precision_loss = "allow"
len_without_is_empty = "allow"
missing_errors_doc = "allow"
missing_panics_doc = "allow"
module_inception = "allow"
module_name_repetitions = "allow"
must_use_candidate = "allow"
struct_field_names = "allow"

[lints.clippy.pedantic]
level = "warn"
priority = -1