cyto_cli/map/
gex.rs

1use std::path::PathBuf;
2
3use anyhow::Result;
4use clap::Parser;
5
6use crate::map::{MultiPairedInput, RuntimeOptions};
7use crate::ArgsOutput;
8
9use super::MapOptions;
10
11#[derive(Parser, Debug)]
12pub struct ArgsGex {
13    #[clap(flatten)]
14    pub input: MultiPairedInput,
15
16    #[clap(flatten)]
17    pub map: MapOptions,
18
19    #[clap(flatten)]
20    pub gex: GexOptions,
21
22    #[clap(flatten)]
23    pub runtime: RuntimeOptions,
24
25    #[clap(flatten)]
26    pub output: ArgsOutput,
27}
28
29#[derive(Parser, Debug)]
30#[clap(next_help_heading = "GEX Options")]
31pub struct GexOptions {
32    /// Path to GEX library file
33    #[clap(short = 'c', long = "gex")]
34    pub gex_filepath: String,
35}
36
37impl ArgsGex {
38    pub fn validate_outdir(&self) -> Result<()> {
39        self.output.validate_outdir()
40    }
41    pub fn log_path(&self) -> PathBuf {
42        self.output.log_path()
43    }
44}
cyto_cli/map/gex.rs

cyto_cli/map/
gex.rs
