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ReadSimConfig

cyanea_seq::read_sim

Struct ReadSimConfig 

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pub struct ReadSimConfig {
    pub read_length: usize,
    pub coverage: f64,
    pub fragment_mean: f64,
    pub fragment_std: f64,
    pub error_rate: f64,
    pub paired: bool,
    pub seed: u64,
}
Expand description

Configuration for the read simulator.

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§read_length: usize

Read length in bases (default 150).

§coverage: f64

Desired sequencing coverage (default 30.0).

§fragment_mean: f64

Mean insert/fragment size in bases (default 300.0).

§fragment_std: f64

Standard deviation of fragment size (default 50.0).

§error_rate: f64

Per-base error rate at position 0 (default 0.001).

§paired: bool

Whether to produce paired-end reads (default true).

§seed: u64

PRNG seed for reproducibility.

Trait Implementations§

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impl Clone for ReadSimConfig

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fn clone(&self) -> ReadSimConfig

Returns a duplicate of the value. Read more
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fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more
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impl Debug for ReadSimConfig

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fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more
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impl Default for ReadSimConfig

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fn default() -> Self

Returns the “default value” for a type. Read more

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unsafe fn clone_to_uninit(&self, dest: *mut u8)

🔬This is a nightly-only experimental API. (clone_to_uninit)
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