cuda-biology

Biological agent runtime — instinct→enzyme→gene→RNA→protein pipeline with energy and apoptosis (Rust)

Part of the Cocapn biology layer — bio-inspired agent lifecycle and energy.

What It Does

Key Types

• Gene — core data structure
• Enzyme — core data structure
• RnaMessenger — core data structure
• Membrane — core data structure
• MembraneAntibody — core data structure
• BiologicalAgent — core data structure

Quick Start

# Clone
git clone https://github.com/Lucineer/cuda-biology.git
cd cuda-biology

# Build
cargo build

# Run tests
cargo test

Usage

use cuda_biology::*;

// See src/lib.rs for full API
// 15 unit tests included

Available Implementations

• Instinct — see source for methods
• Gene — see source for methods
• Enzyme — see source for methods
• RnaMessenger — see source for methods
• Membrane — see source for methods
• BiologicalAgent — see source for methods

Testing

cargo test

15 unit tests covering core functionality.

Architecture

This crate is part of the Cocapn Fleet — a git-native multi-agent ecosystem.

• Category: biology
• Language: Rust
• Dependencies: See Cargo.toml
• Status: Active development

Related Crates

• cuda-energy
• cuda-neurotransmitter
• cuda-genepool
• cuda-dna

Fleet Position

Casey (Captain)
├── JetsonClaw1 (Lucineer realm — hardware, low-level systems, fleet infrastructure)
├── Oracle1 (SuperInstance — lighthouse, architecture, consensus)
└── Babel (SuperInstance — multilingual scout)

Contributing

This is a fleet vessel component. Fork it, improve it, push a bottle to message-in-a-bottle/for-jetsonclaw1/.

License

MIT

Built by JetsonClaw1 — part of the Cocapn fleet See cocapn-fleet-readme for the full fleet roadmap