crispr_screen 0.1.14

A fast and configurable differential expression analysis tool for CRISPR screens
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33

name: Deploy
on:
  push:
    branches:
      - main

jobs:
  deploy:
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v2
      with:
        fetch-depth: 0
    - name: Install mdbook
      run: |
        mkdir mdbook
        curl -sSL https://github.com/rust-lang/mdBook/releases/download/v0.4.14/mdbook-v0.4.14-x86_64-unknown-linux-gnu.tar.gz | tar -xz --directory=./mdbook
        echo `pwd`/mdbook >> $GITHUB_PATH
    - name: Deploy GitHub Pages
      run: |
        cd doc/
        mdbook build
        git worktree add gh-pages
        git config user.name "Deploy from CI"
        git config user.email ""
        cd gh-pages
        # Delete the ref to avoid keeping history.
        git update-ref -d refs/heads/gh-pages
        rm -rf *
        mv ../book/* .
        git add .
        git commit -m "Deploy $GITHUB_SHA to gh-pages"
        git push --force --set-upstream origin gh-pages