cqs 1.22.0

Code intelligence and RAG for AI agents. Semantic search, call graphs, impact analysis, type dependencies, and smart context assembly — in single tool calls. 54 languages + L5X/L5K PLC exports, 91.2% Recall@1 (BGE-large), 0.951 MRR (296 queries). Local ML, GPU-accelerated.
Documentation
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
//! CLI integration tests
//!
//! End-to-end tests for the cqs command-line interface.
//!
//! Tests that access the ML model are serialized to prevent HuggingFace Hub
//! lock contention in CI environments.

use assert_cmd::Command;
use predicates::prelude::*;
use serial_test::serial;
use std::fs;
use tempfile::TempDir;

/// Get a Command for the cqs binary
fn cqs() -> Command {
    #[allow(deprecated)]
    Command::cargo_bin("cqs").expect("Failed to find cqs binary")
}

/// Create a temporary directory with a sample Rust file
fn setup_project() -> TempDir {
    let dir = TempDir::new().expect("Failed to create temp dir");
    let src_dir = dir.path().join("src");
    fs::create_dir(&src_dir).expect("Failed to create src dir");
    fs::write(
        src_dir.join("lib.rs"),
        r#"
/// Adds two numbers
pub fn add(a: i32, b: i32) -> i32 {
    a + b
}

/// Subtracts b from a
pub fn subtract(a: i32, b: i32) -> i32 {
    a - b
}
"#,
    )
    .expect("Failed to write test file");
    dir
}

#[test]
fn test_help_output() {
    cqs()
        .arg("--help")
        .assert()
        .success()
        .stdout(predicate::str::contains("Semantic code search"));
}

#[test]
fn test_version_output() {
    cqs()
        .arg("--version")
        .assert()
        .success()
        .stdout(predicate::str::contains("cqs"));
}

#[test]
#[serial]
fn test_init_creates_cqs_directory() {
    let dir = TempDir::new().expect("Failed to create temp dir");

    cqs()
        .args(["init"])
        .current_dir(dir.path())
        .assert()
        .success()
        .stdout(predicate::str::contains("Created .cqs/"));

    assert!(
        dir.path().join(".cqs").exists(),
        ".cqs directory should exist"
    );
}

#[test]
#[serial]
fn test_init_idempotent() {
    let dir = TempDir::new().expect("Failed to create temp dir");

    // First init
    cqs()
        .args(["init"])
        .current_dir(dir.path())
        .assert()
        .success();

    // Second init should also succeed
    cqs()
        .args(["init"])
        .current_dir(dir.path())
        .assert()
        .success();
}

#[test]
fn test_stats_requires_init() {
    let dir = TempDir::new().expect("Failed to create temp dir");

    cqs()
        .args(["stats"])
        .current_dir(dir.path())
        .assert()
        .failure()
        .stderr(predicate::str::contains("not found"));
}

#[test]
#[serial]
fn test_stats_shows_counts() {
    let dir = setup_project();

    // Initialize
    cqs()
        .args(["init"])
        .current_dir(dir.path())
        .assert()
        .success();

    // Index
    cqs()
        .args(["index"])
        .current_dir(dir.path())
        .assert()
        .success();

    // Stats should show chunk count
    cqs()
        .args(["stats"])
        .current_dir(dir.path())
        .assert()
        .success()
        .stdout(predicate::str::contains("Total chunks:"));
}

#[test]
#[serial]
fn test_index_auto_initializes() {
    // Index command auto-creates .cqs if it doesn't exist
    let dir = setup_project();

    assert!(
        !dir.path().join(".cqs").exists(),
        ".cqs should not exist before index"
    );

    cqs()
        .args(["index"])
        .current_dir(dir.path())
        .assert()
        .success()
        .stdout(predicate::str::contains("Index complete"));

    assert!(
        dir.path().join(".cqs").exists(),
        ".cqs should exist after index"
    );
}

#[test]
#[serial]
fn test_index_parses_files() {
    let dir = setup_project();

    // Initialize
    cqs()
        .args(["init"])
        .current_dir(dir.path())
        .assert()
        .success();

    // Index should succeed
    cqs()
        .args(["index"])
        .current_dir(dir.path())
        .assert()
        .success()
        .stdout(predicate::str::contains("Index complete"));
}

#[test]
#[serial]
fn test_search_returns_results() {
    let dir = setup_project();

    // Initialize and index
    cqs()
        .args(["init"])
        .current_dir(dir.path())
        .assert()
        .success();

    cqs()
        .args(["index"])
        .current_dir(dir.path())
        .assert()
        .success();

    // Search should return at least one result from the indexed functions
    cqs()
        .args(["add numbers"])
        .current_dir(dir.path())
        .assert()
        .success()
        .stdout(predicate::str::contains("results"));
}

#[test]
#[serial]
fn test_search_json_output() {
    let dir = setup_project();

    // Initialize and index
    cqs()
        .args(["init"])
        .current_dir(dir.path())
        .assert()
        .success();

    cqs()
        .args(["index"])
        .current_dir(dir.path())
        .assert()
        .success();

    // Search with JSON output
    cqs()
        .args(["--json", "add numbers"])
        .current_dir(dir.path())
        .assert()
        .success()
        .stdout(predicate::str::contains("\"name\""));
}

#[test]
fn test_completions_generates_script() {
    cqs()
        .args(["completions", "bash"])
        .assert()
        .success()
        .stdout(predicate::str::contains("complete"));
}

#[test]
fn test_invalid_option_fails() {
    cqs()
        .args(["--invalid-option-xyz"])
        .assert()
        .failure()
        .stderr(predicate::str::contains("unexpected argument"));
}

// =============================================================================
// Doctor command tests
// =============================================================================

#[test]
#[serial]
fn test_doctor_runs() {
    let dir = TempDir::new().expect("Failed to create temp dir");

    cqs()
        .args(["doctor"])
        .current_dir(dir.path())
        .assert()
        .success();
}

#[test]
#[serial]
fn test_doctor_shows_runtime() {
    let dir = TempDir::new().expect("Failed to create temp dir");

    cqs()
        .args(["doctor"])
        .current_dir(dir.path())
        .assert()
        .success()
        .stdout(predicate::str::contains("Runtime"));
}

#[test]
#[serial]
fn test_doctor_shows_parser() {
    let dir = TempDir::new().expect("Failed to create temp dir");

    cqs()
        .args(["doctor"])
        .current_dir(dir.path())
        .assert()
        .success()
        .stdout(predicate::str::contains("Parser"));
}

// =============================================================================
// Call graph command tests (callers/callees)
// =============================================================================

#[test]
fn test_callers_no_index() {
    let dir = TempDir::new().expect("Failed to create temp dir");

    cqs()
        .args(["callers", "some_function"])
        .current_dir(dir.path())
        .assert()
        .failure()
        .stderr(predicate::str::contains("not found").or(predicate::str::contains("Index")));
}

#[test]
fn test_callees_no_index() {
    let dir = TempDir::new().expect("Failed to create temp dir");

    cqs()
        .args(["callees", "some_function"])
        .current_dir(dir.path())
        .assert()
        .failure()
        .stderr(predicate::str::contains("not found").or(predicate::str::contains("Index")));
}

#[test]
#[serial]
fn test_callers_json_output() {
    let dir = setup_project();

    // Initialize and index first
    cqs()
        .args(["init"])
        .current_dir(dir.path())
        .assert()
        .success();

    cqs()
        .args(["index"])
        .current_dir(dir.path())
        .assert()
        .success();

    // callers with --json should return valid JSON (even if empty)
    let output = cqs()
        .args(["callers", "add", "--json"])
        .current_dir(dir.path())
        .assert()
        .success();

    // Parse stdout to verify it's valid JSON
    let stdout = String::from_utf8(output.get_output().stdout.clone()).unwrap();
    let parsed: serde_json::Value = serde_json::from_str(stdout.trim())
        .unwrap_or_else(|e| panic!("Invalid JSON output: {} — raw: {}", e, stdout));
    assert!(parsed.is_array(), "callers --json should return array");
}

#[test]
#[serial]
fn test_callees_json_output() {
    let dir = setup_project();

    // Initialize and index first
    cqs()
        .args(["init"])
        .current_dir(dir.path())
        .assert()
        .success();

    cqs()
        .args(["index"])
        .current_dir(dir.path())
        .assert()
        .success();

    // callees with --json should return valid JSON
    let output = cqs()
        .args(["callees", "add", "--json"])
        .current_dir(dir.path())
        .assert()
        .success();

    let stdout = String::from_utf8(output.get_output().stdout.clone()).unwrap();
    let parsed: serde_json::Value = serde_json::from_str(stdout.trim())
        .unwrap_or_else(|e| panic!("Invalid JSON output: {} — raw: {}", e, stdout));
    assert!(parsed.is_object(), "callees --json should return object");
    assert!(parsed["name"].is_string(), "Should have name field");
}

// =============================================================================
// TC10: GC command tests
// =============================================================================

#[test]
fn test_gc_requires_index() {
    let dir = TempDir::new().expect("Failed to create temp dir");

    cqs()
        .args(["gc"])
        .current_dir(dir.path())
        .assert()
        .failure()
        .stderr(predicate::str::contains("not found").or(predicate::str::contains("Index")));
}

#[test]
#[serial]
fn test_gc_json_on_clean_index() {
    let dir = setup_project();

    // Initialize and index
    cqs()
        .args(["init"])
        .current_dir(dir.path())
        .assert()
        .success();

    cqs()
        .args(["index"])
        .current_dir(dir.path())
        .assert()
        .success();

    // GC on a fresh index should find nothing to prune
    let output = cqs()
        .args(["gc", "--json"])
        .current_dir(dir.path())
        .assert()
        .success();

    let stdout = String::from_utf8(output.get_output().stdout.clone()).unwrap();
    let parsed: serde_json::Value = serde_json::from_str(stdout.trim())
        .unwrap_or_else(|e| panic!("Invalid JSON output: {} — raw: {}", e, stdout));

    assert_eq!(
        parsed["pruned_chunks"], 0,
        "Fresh index should have 0 pruned chunks"
    );
    assert_eq!(
        parsed["pruned_calls"], 0,
        "Fresh index should have 0 pruned calls"
    );
    assert_eq!(parsed["hnsw_rebuilt"], false, "HNSW should not be rebuilt");
}

#[test]
#[serial]
fn test_gc_prunes_missing_files() {
    let dir = setup_project();

    // Initialize and index
    cqs()
        .args(["init"])
        .current_dir(dir.path())
        .assert()
        .success();

    cqs()
        .args(["index"])
        .current_dir(dir.path())
        .assert()
        .success();

    // Delete the source file to make chunks stale
    fs::remove_file(dir.path().join("src/lib.rs")).expect("Failed to remove file");

    // GC should prune the missing file's chunks
    let output = cqs()
        .args(["gc", "--json"])
        .current_dir(dir.path())
        .assert()
        .success();

    let stdout = String::from_utf8(output.get_output().stdout.clone()).unwrap();
    let parsed: serde_json::Value = serde_json::from_str(stdout.trim())
        .unwrap_or_else(|e| panic!("Invalid JSON output: {} — raw: {}", e, stdout));

    assert!(
        parsed["pruned_chunks"].as_u64().unwrap() > 0,
        "Should prune chunks for missing file"
    );
    assert_eq!(
        parsed["missing_files"].as_u64().unwrap(),
        1,
        "Should report 1 missing file"
    );
}

// =============================================================================
// TC11: Dead code command tests
// =============================================================================

#[test]
fn test_dead_requires_index() {
    let dir = TempDir::new().expect("Failed to create temp dir");

    cqs()
        .args(["dead"])
        .current_dir(dir.path())
        .assert()
        .failure()
        .stderr(predicate::str::contains("not found").or(predicate::str::contains("Index")));
}

#[test]
#[serial]
fn test_dead_json_output() {
    let dir = setup_project();

    // Initialize and index
    cqs()
        .args(["init"])
        .current_dir(dir.path())
        .assert()
        .success();

    cqs()
        .args(["index"])
        .current_dir(dir.path())
        .assert()
        .success();

    // dead --json should return valid JSON
    let output = cqs()
        .args(["dead", "--json"])
        .current_dir(dir.path())
        .assert()
        .success();

    let stdout = String::from_utf8(output.get_output().stdout.clone()).unwrap();
    let parsed: serde_json::Value = serde_json::from_str(stdout.trim())
        .unwrap_or_else(|e| panic!("Invalid JSON output: {} — raw: {}", e, stdout));

    // Should have dead and possibly_dead_pub arrays
    assert!(
        parsed["dead"].is_array(),
        "dead --json should have 'dead' array, got: {}",
        parsed
    );
    assert!(
        parsed["possibly_dead_pub"].is_array(),
        "dead --json should have 'possibly_dead_pub' array, got: {}",
        parsed
    );

    // Our test project has two pub functions (add, subtract) with no callers
    // They should appear in possibly_dead_pub (since they're public)
    let possibly_dead = parsed["possibly_dead_pub"].as_array().unwrap();
    assert!(
        !possibly_dead.is_empty(),
        "Public functions with no callers should be in possibly_dead_pub"
    );
}

#[test]
#[serial]
fn test_dead_include_pub_flag() {
    let dir = setup_project();

    cqs()
        .args(["init"])
        .current_dir(dir.path())
        .assert()
        .success();

    cqs()
        .args(["index"])
        .current_dir(dir.path())
        .assert()
        .success();

    // dead --include-pub --json should also succeed
    let output = cqs()
        .args(["dead", "--include-pub", "--json"])
        .current_dir(dir.path())
        .assert()
        .success();

    let stdout = String::from_utf8(output.get_output().stdout.clone()).unwrap();
    let parsed: serde_json::Value = serde_json::from_str(stdout.trim())
        .unwrap_or_else(|e| panic!("Invalid JSON output: {} — raw: {}", e, stdout));
    assert!(parsed["dead"].is_array(), "Should have 'dead' array");
    // With --include-pub, public functions should move to the dead list
    let dead = parsed["dead"].as_array().unwrap();
    assert!(
        !dead.is_empty(),
        "With --include-pub, public functions should be in 'dead' list"
    );
}