cpr 1.1.0

CapR, Efficient RNA Context Probability Estimator
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23

extern crate time;
extern crate num;

#[cfg(test)]
mod tsts {
  use time::precise_time_ns;
  use num::pow::pow;
  use std::process::{Command, Output};

  #[test]
  fn tst_cpr() {
    let cmnd = "target/release/cpr";
    let args = ["-i", "asts/lncrnas_4_tst.fa", "-o", "asts/lncrnas_4_tst.dat"];
    let bgn = precise_time_ns();
    rn_cmnd(cmnd, &args, "Failed to run CapR.");
    let elps_tm = precise_time_ns() - bgn;
    println!("Elapsed time = {}[s].", elps_tm as f32 * pow(0.1, 9));
  }

  fn rn_cmnd(cmnd: &str, args: &[&str], expct: &str) -> Output {
    Command::new(cmnd).args(args).output().expect(expct)
  }
}