# CapR, Efficient RNA Context Probability Estimator
This binary provides the CapR algorithm originated by Tsukasa Fukunaga, an efficient RNA conxtext probability estimator.
It provides the multi-threaded one while [the original binary](https://github.com/fukunagatsu/CapR) provides the serial one.
You can check all the available options by adding the option "-h".
# Installation
This project has been written by Rust, a systems programming language.
So first you need to install a Rust compiler (Rustc), Rust package manager (Cargo) and Rust standard library.
Please visit [the Rust website](https://www.rust-lang.org) to see more about it.
You can install them with 1 line as follows:
```bash
The above installation is done by [Rustup](https://github.com/rust-lang-nursery/rustup.rs), so you can easily switch the compiler to use.
Now you can install CapR as follows:
```bash
$ cargo install --git https://github.com/heartsh/cpr
```
Check if it has been installed properly as follows:
```bash
$ cpr
```
If you're interested in how much fast it is, run a benchmark as follows:
```bash
$ git clone https://github.com/heartsh/cpr && cd cpr
$ tar xvf asts.tar.bz2
$ cargo test --release -- --nocapture
```
# Author
[Heartsh](https://github.com/heartsh)
# License
Copyright (c) 2016 Heartsh
Licensed under [the MIT license](http://opensource.org/licenses/MIT).