cpr 1.0.6

CapR, Efficient RNA Context Probability Estimator
Documentation 
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# CapR, Efficient RNA Context Probability Estimator
This binary provides the CapR algorithm originated by Tsukasa Fukunaga, an efficient RNA conxtext probability estimator. 
It provides the multi-threaded CapR while [the original binary](https://github.com/fukunagatsu/CapR) provides the serial one.
You can check all the available options by adding a option, "-h". 

# Installation
This project has been written by Rust, a system programming language.
So first you need to install a Rust compiler (Rustc), Rust package manager (Cargo) and Rust standard library. 
Please visit [a Rust homepage](https://www.rust-lang.org) to see more about Rust.
You can install Rustc, Cargo and the Rust standard library with one line as follows:
```bash
$ curl https://sh.rustup.rs -sSf | sh -s -- --default-toolchain nightly
```
The above installation is done by [Rustup](https://github.com/rust-lang-nursery/rustup.rs), so you can easily switch a compiler to use. 
The nightly compiler enbles to test and benchmark on Rust.
If you don't need them, switch to the stable one as follows: 
```bash
$ rustup default stable
```
So you can install CapR as follows: 
```bash
$ cargo install --git https://github.com/heartsh/cpr
```
Check if CapR has been installed properly as follows: 
```bash
$ cpr
```
If you're interested in how much fast CapR is, run a benchmark as follows: 
```bash
$ git clone https://github.com/heartsh/cpr && cd cpr
$ tar xvf asts.tar.gz && gunzip asts/*.gz
$ cargo test --release -- --nocapture
```

# Author
[Heartsh](https://github.com/heartsh)

# License
Copyright (c) 2016 Heartsh  
Licensed under [the MIT license](http://opensource.org/licenses/MIT).