channels:
- conda-forge
- bioconda
- defaults
dependencies:
- samtools >=1.9
- coreutils
- minimap2 >=2.24
- bwa >=0.7.17
- bwa-mem2
- dashing >= 0.4.0, < 1.0 # dashing 1.0 build gives illegal instruction errors.
- fastani >= 1.3
- strobealign >= 0.11.0 # newest version at time of implementation
- extern