coverm 0.8.0

Read coverage calculator for metagenomics
Documentation 
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use bird_tool_utils::external_command_checker::*;

pub fn check_for_bwa() {
    check_for_external_command_presence_with_which("bwa").expect("Failed to find installed BWA");
}

pub fn check_for_bwa_mem2() {
    check_for_external_command_presence_with_which("bwa").expect("Failed to find installed BWA");
    default_version_check("bwa-mem2", "2.0", false, Some("bwa-mem2 version"))
        .expect("Failed to find sufficient version of bwa-mem2");
}

pub fn check_for_minibwa() {
    check_for_external_command_presence_with_which("minibwa")
        .expect("Failed to find installed minibwa");
    // minibwa prints its version (e.g. "0.2-r370") via the 'version'
    // subcommand; 'minibwa --version' is not recognised.
    default_version_check("minibwa", "0.2-r370", false, Some("minibwa version"))
        .expect("Failed to find sufficient version of minibwa");
}

pub fn check_for_minimap2() {
    check_for_external_command_presence_with_which("minimap2")
        .expect("Failed to find installed minimap2");
    default_version_check("minimap2", "2.24-r1122", false, None)
        .expect("Failed to find sufficient version of minimap2");
}

pub fn check_for_samtools() {
    check_for_external_command_presence_with_which("samtools")
        .expect("Failed to find installed samtools");
    default_version_check("samtools", "1.9", false, None)
        .expect("Failed to find sufficient version of samtools");
}

pub fn check_for_strobealign() {
    check_for_external_command_presence_with_which("strobealign")
        .expect("Failed to find installed strobealign");
    default_version_check("strobealign", "0.11.0", false, None)
        .expect("Failed to find sufficient version of strobealign");
}

pub fn check_for_rammap() {
    check_for_external_command_presence_with_which("rammap")
        .expect("Failed to find installed rammap");
    default_version_check("rammap", "1.1.1", false, None)
        .expect("Failed to find sufficient version of rammap");
}